From 8c4088d602cff8b5276512c5c3d234ee64a89a0e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Nelly=20S=C3=A9lem?= Date: Sat, 6 Apr 2024 11:41:00 -0600 Subject: [PATCH] Update 03-horizontalGeneTransfer-TDA.md --- _episodes/03-horizontalGeneTransfer-TDA.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_episodes/03-horizontalGeneTransfer-TDA.md b/_episodes/03-horizontalGeneTransfer-TDA.md index 63784ac..f243cad 100644 --- a/_episodes/03-horizontalGeneTransfer-TDA.md +++ b/_episodes/03-horizontalGeneTransfer-TDA.md @@ -45,7 +45,7 @@ Remember, $ \H_0 $ in the barcode diagram indicates the presence of connected co > To learn more about applications of TDA in genomics consult the Rabadan book [Topological Data Analysis for Genomics](https://www.amazon.com.mx/Topological-Data-Analysis-Genomics-Evolution/dp/1107159547) {: .callout} -Here we will study three study cases, first, we will show persistent homology in vertical inheritance, then we will study a simulation of Horizontal Gene Transfer, and finally, we will study the persistent homology of the resistant genes from *Streptococcus agalactiae* that we obtained in the lesson []() +Here we will study three study cases, first, we will show persistent homology in vertical inheritance, then we will study a simulation of Horizontal Gene Transfer, and finally, we will study the persistent homology of the resistant genes from *Streptococcus agalactiae* that we obtained in the episode [Annotating Genomic Data](https://carpentries-incubator.github.io/pangenomics/03-annotation-with-Prokka/index.html), from the lesson [Pangenome Analysis in Prokaryotes](https://carpentries-incubator.github.io/pangenomics/index.html). ### **Library** To begin, we will import the necessary packages.