diff --git a/_episodes/03-horizontalGeneTransfer-TDA.md b/_episodes/03-horizontalGeneTransfer-TDA.md index d242f3e..3995e37 100644 --- a/_episodes/03-horizontalGeneTransfer-TDA.md +++ b/_episodes/03-horizontalGeneTransfer-TDA.md @@ -354,7 +354,7 @@ We want to investigate whether the resistance genes present in the first pangenome of _S. agalactiae_ are the product of vertical inheritance, or other processes could be involved. -> ## Exercise 1(Begginer): Manipulating dataframes +> ## Exercise 1(Beginner): Manipulating dataframes > Dataframes > Ask [ChatPGT](https://chat.openai.com/) or consult [stack over flow](https://stackoverflow.com/) about the following dataframe functions > 1) how to load data in dataframe from a link @@ -419,7 +419,7 @@ strains_names ~~~ {: .output} -> ## Exercise 2(Begginer): Persistent homology of _S. agalactiae_ resistome +> ## Exercise 2(Beginner): Persistent homology of _S. agalactiae_ resistome > Fill in the blanks with the following parameters to calculate the persistent homology of the _S. agalactiae_ resistome. > hamming_matrix_3, values, calculate_hamming_matrix, create_complex > @@ -453,7 +453,7 @@ strains_names > {: .solution} {: .challenge} -> ## Exercise 3(Begginer): Plot the persistent barcode of _S. agalactiae_ resistome +> ## Exercise 3(Beginner): Plot the persistent barcode of _S. agalactiae_ resistome > Chose the right parameters to plot the persistence diagram of _S. agalactiae_ resistome. > > Bacode population with hgt