diff --git a/.travis.yml b/.travis.yml index 35a085f..43d71e3 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,5 +1,3 @@ -# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r - language: R r: - oldrel @@ -9,7 +7,6 @@ sudo: false cache: packages r_packages: - covr - - logging after_success: - Rscript -e 'library(covr); codecov(quiet = FALSE)' latex: false diff --git a/R/downloadFile.R b/R/downloadFile.R index c7bbe9a..00342e1 100755 --- a/R/downloadFile.R +++ b/R/downloadFile.R @@ -95,7 +95,7 @@ downloadFileButton <- function(id, #' @param output provided by \code{shiny::callModule} #' @param session provided by \code{shiny::callModule} #' \cr \cr -#' @param logger \link[logging]{logging} logger to use +#' @param logger \link[logging:logging-package]{logging} logger to use #' @param filenameroot the base text used for user-downloaded file - can be #' either a character string or a reactive expression that returns a character #' string @@ -116,7 +116,7 @@ downloadFileButton <- function(id, #' @seealso \link[periscope]{downloadFile_ValidateTypes} #' @seealso \link[periscope]{downloadFile_AvailableTypes} #' @seealso \link[shiny]{callModule} -#' @seealso \link[logging]{logging} +#' @seealso \link[logging:logging-package]{logging} #' #' @export downloadFile <- function(input, output, session, logger, diff --git a/R/downloadablePlot.R b/R/downloadablePlot.R index aadeb21..ae7ec47 100755 --- a/R/downloadablePlot.R +++ b/R/downloadablePlot.R @@ -129,7 +129,7 @@ downloadablePlotUI <- function(id, #' @param output provided by \code{shiny::callModule} #' @param session provided by \code{shiny::callModule} #' \cr \cr -#' @param logger \link[logging]{logging} logger to use +#' @param logger \link[logging:logging-package]{logging} logger to use #' @param filenameroot the base text used for user-downloaded file - can be #' either a character string or a reactive expression returning a character #' string @@ -155,7 +155,7 @@ downloadablePlotUI <- function(id, #' #' @seealso \link[periscope]{downloadablePlotUI} #' @seealso \link[shiny]{callModule} -#' @seealso \link[logging]{logging} +#' @seealso \link[logging:logging-package]{logging} #' #' @export downloadablePlot <- function(input, output, session, logger, diff --git a/R/downloadableTable.R b/R/downloadableTable.R index c3efa11..555fa3e 100755 --- a/R/downloadableTable.R +++ b/R/downloadableTable.R @@ -86,7 +86,7 @@ downloadableTableUI <- function(id, #' @param output provided by \code{shiny::callModule} #' @param session provided by \code{shiny::callModule} #' \cr \cr -#' @param logger \link[logging]{logging} logger to use +#' @param logger \link[logging:logging-package]{logging} logger to use #' @param filenameroot the base text used for user-downloaded file - can be #' either a character string or a reactive expression returning a character #' string @@ -117,7 +117,7 @@ downloadableTableUI <- function(id, #' #' @seealso \link[periscope]{downloadableTableUI} #' @seealso \link[shiny]{callModule} -#' @seealso \link[logging]{logging} +#' @seealso \link[logging:logging-package]{logging} #' #' @export downloadableTable <- function(input, output, session, logger, diff --git a/R/ui_helpers.R b/R/ui_helpers.R index ef990c8..46308c6 100755 --- a/R/ui_helpers.R +++ b/R/ui_helpers.R @@ -163,7 +163,7 @@ ui_tooltip <- function(id, label = "", text = "") { #' Call this function from \code{program/global.R} to set the application #' parameters. #' -#' @seealso \link[logging]{logging} +#' @seealso \link[logging:logging-package]{logging} #' #' @export set_app_parameters <- function(title, titleinfo = NULL, diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..50ddaf9 --- /dev/null +++ b/codecov.yml @@ -0,0 +1,4 @@ +codecov: + notify: + require_ci_to_pass: yes +comment: false diff --git a/man/downloadFile.Rd b/man/downloadFile.Rd index 54ecc8c..319f427 100755 --- a/man/downloadFile.Rd +++ b/man/downloadFile.Rd @@ -15,7 +15,7 @@ downloadFile(input, output, session, logger, filenameroot, \item{session}{provided by \code{shiny::callModule} \cr \cr} -\item{logger}{\link[logging]{logging} logger to use} +\item{logger}{\link[logging:logging-package]{logging} logger to use} \item{filenameroot}{the base text used for user-downloaded file - can be either a character string or a reactive expression that returns a character @@ -51,5 +51,5 @@ server.R using the same id provided in \code{downloadFileButton}: \link[shiny]{callModule} -\link[logging]{logging} +\link[logging:logging-package]{logging} } diff --git a/man/downloadablePlot.Rd b/man/downloadablePlot.Rd index 6121e97..64eefc9 100755 --- a/man/downloadablePlot.Rd +++ b/man/downloadablePlot.Rd @@ -15,7 +15,7 @@ downloadablePlot(input, output, session, logger, filenameroot, \item{session}{provided by \code{shiny::callModule} \cr \cr} -\item{logger}{\link[logging]{logging} logger to use} +\item{logger}{\link[logging:logging-package]{logging} logger to use} \item{filenameroot}{the base text used for user-downloaded file - can be either a character string or a reactive expression returning a character @@ -56,5 +56,5 @@ downloadfxns, visibleplot)}} \link[shiny]{callModule} -\link[logging]{logging} +\link[logging:logging-package]{logging} } diff --git a/man/downloadableTable.Rd b/man/downloadableTable.Rd index 1a96a87..b9edf65 100755 --- a/man/downloadableTable.Rd +++ b/man/downloadableTable.Rd @@ -16,7 +16,7 @@ downloadableTable(input, output, session, logger, filenameroot, \item{session}{provided by \code{shiny::callModule} \cr \cr} -\item{logger}{\link[logging]{logging} logger to use} +\item{logger}{\link[logging:logging-package]{logging} logger to use} \item{filenameroot}{the base text used for user-downloaded file - can be either a character string or a reactive expression returning a character @@ -65,5 +65,5 @@ currently selected rows in the display table. \link[shiny]{callModule} -\link[logging]{logging} +\link[logging:logging-package]{logging} } diff --git a/man/set_app_parameters.Rd b/man/set_app_parameters.Rd index dd8a8af..544b7eb 100755 --- a/man/set_app_parameters.Rd +++ b/man/set_app_parameters.Rd @@ -42,5 +42,5 @@ parameters. } \seealso{ -\link[logging]{logging} +\link[logging:logging-package]{logging} } diff --git a/periscope.Rproj b/periscope.Rproj index 566bd78..51b2220 100644 --- a/periscope.Rproj +++ b/periscope.Rproj @@ -17,3 +17,4 @@ AutoAppendNewline: Yes BuildType: Package PackageUseDevtools: Yes PackageInstallArgs: --no-multiarch --with-keep.source +PackageRoxygenize: rd,collate,namespace,vignette