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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(plot,calculateAveragePairwiseCorrelationObject)
S3method(plot,calculateCellDistancesObject)
S3method(plot,calculateCellSimilarityPCAObject)
S3method(plot,calculateDiscriminantSpaceObject)
S3method(plot,calculateNearestNeighborProbabilitiesObject)
S3method(plot,calculateSIRSpaceObject)
S3method(plot,calculateWassersteinDistanceObject)
S3method(plot,compareCCAObject)
S3method(plot,comparePCAObject)
S3method(plot,comparePCASubspaceObject)
S3method(plot,detectAnomalyObject)
S3method(plot,regressPCObject)
export(boxplotPCA)
export(calculateAveragePairwiseCorrelation)
export(calculateCategorizationEntropy)
export(calculateCellDistances)
export(calculateCellDistancesSimilarity)
export(calculateCellSimilarityPCA)
export(calculateCramerPValue)
export(calculateDiscriminantSpace)
export(calculateHVGOverlap)
export(calculateHotellingPValue)
export(calculateNearestNeighborProbabilities)
export(calculateSIRSpace)
export(calculateVarImpOverlap)
export(calculateWassersteinDistance)
export(compareCCA)
export(comparePCA)
export(comparePCASubspace)
export(detectAnomaly)
export(histQCvsAnnotation)
export(plotCellTypeMDS)
export(plotCellTypePCA)
export(plotGeneExpressionDimred)
export(plotGeneSetScores)
export(plotMarkerExpression)
export(plotPairwiseDistancesDensity)
export(plotQCvsAnnotation)
export(projectPCA)
export(projectSIR)
export(regressPC)
import(SingleCellExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(ggridges,geom_density_ridges)
importFrom(methods,is)
importFrom(rlang,.data)
importFrom(stats,approxfun)
importFrom(stats,cancor)
importFrom(stats,cmdscale)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,mahalanobis)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,qchisq)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,tail)