From a06fbadd0541cd852b6da2ddc85f59547ec1d6e4 Mon Sep 17 00:00:00 2001 From: AnthonyChristidis <34141555+AnthonyChristidis@users.noreply.github.com> Date: Sat, 7 Sep 2024 20:58:45 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20ccb-hms/?= =?UTF-8?q?scDiagnostics@373d086b2c99eeaed5634261743fe466f0a72685=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- articles/AnnotationAnomalies.html | 4 ++-- articles/CellDistancesDiagnostics.html | 4 ++-- articles/DatasetMarkerGeneAlignment.html | 4 ++-- articles/QCandAnnotationScores.html | 4 ++-- articles/StatisticalMeasures.html | 4 ++-- articles/VisualizationTools.html | 4 ++-- articles/index.html | 2 +- articles/scDiagnostics.html | 4 ++-- authors.html | 6 +++--- index.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/adjustPValues.html | 2 +- reference/argumentCheck.html | 2 +- reference/boxplotPCA.html | 2 +- reference/calculateAveragePairwiseCorrelation.html | 2 +- reference/calculateCategorizationEntropy.html | 2 +- reference/calculateCellDistances.html | 2 +- reference/calculateCellDistancesSimilarity.html | 2 +- reference/calculateCellSimilarityPCA.html | 2 +- reference/calculateCramerPValue.html | 2 +- reference/calculateDiscriminantSpace.html | 2 +- reference/calculateHVGOverlap.html | 2 +- reference/calculateHotellingPValue.html | 2 +- reference/calculateNearestNeighborProbabilities.html | 2 +- reference/calculateVarImpOverlap.html | 2 +- reference/calculate_entropy.html | 2 +- reference/compareCCA.html | 2 +- reference/comparePCA.html | 2 +- reference/comparePCASubspace.html | 2 +- reference/detectAnomaly.html | 2 +- reference/generateColors.html | 2 +- reference/histQCvsAnnotation.html | 2 +- reference/hotellingT2.html | 2 +- reference/index.html | 2 +- reference/inverse_normal_trans.html | 2 +- reference/ledoitWolf.html | 2 +- reference/n_elements.html | 2 +- reference/plotCellTypeMDS.html | 2 +- reference/plotCellTypePCA.html | 2 +- reference/plotGeneExpressionDimred.html | 2 +- reference/plotGeneSetScores.html | 2 +- reference/plotMarkerExpression.html | 2 +- reference/plotPairwiseDistancesDensity.html | 2 +- reference/plotQCvsAnnotation.html | 2 +- reference/plotWassersteinDistance.html | 2 +- reference/projectPCA.html | 2 +- reference/qc_data.html | 2 +- reference/query_data.html | 2 +- reference/reference_data.html | 2 +- reference/regressPC.html | 2 +- reference/scDiagnostics-package.html | 2 +- 53 files changed, 62 insertions(+), 62 deletions(-) diff --git a/404.html b/404.html index 2bd3ac5..8c3dcf3 100644 --- a/404.html +++ b/404.html @@ -33,7 +33,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/articles/AnnotationAnomalies.html b/articles/AnnotationAnomalies.html index 5dbabfb..55f11b7 100644 --- a/articles/AnnotationAnomalies.html +++ b/articles/AnnotationAnomalies.html @@ -33,7 +33,7 @@ scDiagnostics - 0.99.7 + 0.99.8 @@ -424,7 +424,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 @@ -348,7 +348,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 @@ -829,7 +829,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 @@ -302,7 +302,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 @@ -560,7 +560,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 @@ -507,7 +507,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 diff --git a/articles/scDiagnostics.html b/articles/scDiagnostics.html index 5aa91a8..4afd837 100644 --- a/articles/scDiagnostics.html +++ b/articles/scDiagnostics.html @@ -33,7 +33,7 @@ scDiagnostics - 0.99.7 + 0.99.8 @@ -739,7 +739,7 @@

R Session Info scDiagnostics - 0.99.7 + 0.99.8 @@ -111,13 +111,13 @@

Citation

Christidis A, Ghazi A, Chawla S, Geistlinger L, Gentleman R (2024). scDiagnostics: Cell type annotation diagnostics. -R package version 0.99.7, https://github.com/ccb-hms/scDiagnostics. +R package version 0.99.8, https://github.com/ccb-hms/scDiagnostics. 

@Manual{,
   title = {scDiagnostics: Cell type annotation diagnostics},
   author = {Anthony Christidis and Andrew Ghazi and Smriti Chawla and Ludwig Geistlinger and Robert Gentleman},
   year = {2024},
-  note = {R package version 0.99.7},
+  note = {R package version 0.99.8},
   url = {https://github.com/ccb-hms/scDiagnostics},
 }
diff --git a/index.html b/index.html index ecd213e..5dc7bae 100644 --- a/index.html +++ b/index.html @@ -34,7 +34,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/news/index.html b/news/index.html index b373186..cd68aeb 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/pkgdown.yml b/pkgdown.yml index eb894b1..1188418 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -9,7 +9,7 @@ articles: scDiagnostics: scDiagnostics.html StatisticalMeasures: StatisticalMeasures.html VisualizationTools: VisualizationTools.html -last_built: 2024-09-07T20:34Z +last_built: 2024-09-07T20:55Z urls: reference: https://ccb-hms.github.io/scDiagnostics/reference article: https://ccb-hms.github.io/scDiagnostics/articles diff --git a/reference/adjustPValues.html b/reference/adjustPValues.html index 9bd9bba..d03d882 100644 --- a/reference/adjustPValues.html +++ b/reference/adjustPValues.html @@ -19,7 +19,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/argumentCheck.html b/reference/argumentCheck.html index 8ee9dac..d50fdf5 100644 --- a/reference/argumentCheck.html +++ b/reference/argumentCheck.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/boxplotPCA.html b/reference/boxplotPCA.html index 6d8a64c..fd43c45 100644 --- a/reference/boxplotPCA.html +++ b/reference/boxplotPCA.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateAveragePairwiseCorrelation.html b/reference/calculateAveragePairwiseCorrelation.html index 894881d..c5bdf58 100644 --- a/reference/calculateAveragePairwiseCorrelation.html +++ b/reference/calculateAveragePairwiseCorrelation.html @@ -20,7 +20,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateCategorizationEntropy.html b/reference/calculateCategorizationEntropy.html index 3d788a9..019e183 100644 --- a/reference/calculateCategorizationEntropy.html +++ b/reference/calculateCategorizationEntropy.html @@ -27,7 +27,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateCellDistances.html b/reference/calculateCellDistances.html index e527c7a..166f912 100644 --- a/reference/calculateCellDistances.html +++ b/reference/calculateCellDistances.html @@ -20,7 +20,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateCellDistancesSimilarity.html b/reference/calculateCellDistancesSimilarity.html index c7655b9..a2976af 100644 --- a/reference/calculateCellDistancesSimilarity.html +++ b/reference/calculateCellDistancesSimilarity.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateCellSimilarityPCA.html b/reference/calculateCellSimilarityPCA.html index d3f0081..6bb4cbd 100644 --- a/reference/calculateCellSimilarityPCA.html +++ b/reference/calculateCellSimilarityPCA.html @@ -19,7 +19,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateCramerPValue.html b/reference/calculateCramerPValue.html index f45a44a..aecabbd 100644 --- a/reference/calculateCramerPValue.html +++ b/reference/calculateCramerPValue.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateDiscriminantSpace.html b/reference/calculateDiscriminantSpace.html index fa1b117..c7fc897 100644 --- a/reference/calculateDiscriminantSpace.html +++ b/reference/calculateDiscriminantSpace.html @@ -20,7 +20,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateHVGOverlap.html b/reference/calculateHVGOverlap.html index 9f6bf8e..bc533ca 100644 --- a/reference/calculateHVGOverlap.html +++ b/reference/calculateHVGOverlap.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateHotellingPValue.html b/reference/calculateHotellingPValue.html index e267311..55c353a 100644 --- a/reference/calculateHotellingPValue.html +++ b/reference/calculateHotellingPValue.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateNearestNeighborProbabilities.html b/reference/calculateNearestNeighborProbabilities.html index de899b5..d1fb818 100644 --- a/reference/calculateNearestNeighborProbabilities.html +++ b/reference/calculateNearestNeighborProbabilities.html @@ -20,7 +20,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculateVarImpOverlap.html b/reference/calculateVarImpOverlap.html index 8a24d09..dc906a6 100644 --- a/reference/calculateVarImpOverlap.html +++ b/reference/calculateVarImpOverlap.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/calculate_entropy.html b/reference/calculate_entropy.html index e32f74f..f0d721f 100644 --- a/reference/calculate_entropy.html +++ b/reference/calculate_entropy.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/compareCCA.html b/reference/compareCCA.html index f286e71..d2ddafe 100644 --- a/reference/compareCCA.html +++ b/reference/compareCCA.html @@ -22,7 +22,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/comparePCA.html b/reference/comparePCA.html index 5cee389..8915e7b 100644 --- a/reference/comparePCA.html +++ b/reference/comparePCA.html @@ -20,7 +20,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/comparePCASubspace.html b/reference/comparePCASubspace.html index 72d28fd..2a6141e 100644 --- a/reference/comparePCASubspace.html +++ b/reference/comparePCASubspace.html @@ -22,7 +22,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/detectAnomaly.html b/reference/detectAnomaly.html index 1d8d2fd..868f56d 100644 --- a/reference/detectAnomaly.html +++ b/reference/detectAnomaly.html @@ -21,7 +21,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/generateColors.html b/reference/generateColors.html index f70d2bb..30ddc38 100644 --- a/reference/generateColors.html +++ b/reference/generateColors.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/histQCvsAnnotation.html b/reference/histQCvsAnnotation.html index 7ef2972..0911193 100644 --- a/reference/histQCvsAnnotation.html +++ b/reference/histQCvsAnnotation.html @@ -18,7 +18,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/hotellingT2.html b/reference/hotellingT2.html index c002e65..ab13b8e 100644 --- a/reference/hotellingT2.html +++ b/reference/hotellingT2.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/index.html b/reference/index.html index edee89b..f1957f8 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/inverse_normal_trans.html b/reference/inverse_normal_trans.html index 94f062d..26b7616 100644 --- a/reference/inverse_normal_trans.html +++ b/reference/inverse_normal_trans.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/ledoitWolf.html b/reference/ledoitWolf.html index 5e7c1ea..bbb5b3b 100644 --- a/reference/ledoitWolf.html +++ b/reference/ledoitWolf.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/n_elements.html b/reference/n_elements.html index 1d3aaec..1485bf3 100644 --- a/reference/n_elements.html +++ b/reference/n_elements.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/plotCellTypeMDS.html b/reference/plotCellTypeMDS.html index 1ec398d..0c38c71 100644 --- a/reference/plotCellTypeMDS.html +++ b/reference/plotCellTypeMDS.html @@ -20,7 +20,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/plotCellTypePCA.html b/reference/plotCellTypePCA.html index e0ba471..ea9c78b 100644 --- a/reference/plotCellTypePCA.html +++ b/reference/plotCellTypePCA.html @@ -17,7 +17,7 @@ scDiagnostics - 0.99.7 + 0.99.8 diff --git a/reference/plotGeneExpressionDimred.html b/reference/plotGeneExpressionDimred.html index 26ffe0f..86aa33a 100644 --- a/reference/plotGeneExpressionDimred.html +++ b/reference/plotGeneExpressionDimred.html @@ -17,7 +17,7 @@ scDiagnostics - 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