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runtests.py
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runtests.py
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#!/usr/bin/env python
"""
runtests.py [OPTIONS] [-- ARGS]
Run tests, building the project first.
Examples::
$ python runtests.py
$ python runtests.py -s {SAMPLE_SUBMODULE}
$ python runtests.py -t {SAMPLE_TEST}
$ python runtests.py --ipython
$ python runtests.py --python somescript.py
$ python runtests.py --bench
$ python runtests.py --no-build --bench signal.LTI
Run a debugger:
$ gdb --args python runtests.py [...other args...]
Generate C code coverage listing under build/lcov/:
(requires http://ltp.sourceforge.net/coverage/lcov.php)
$ python runtests.py --gcov [...other args...]
$ python runtests.py --lcov-html
"""
#
# This is a generic test runner script for projects using NumPy's test
# framework. Change the following values to adapt to your project:
#
PROJECT_MODULE = "scipy"
PROJECT_ROOT_FILES = ['scipy', 'LICENSE.txt', 'setup.py']
SAMPLE_TEST = "scipy.fftpack.tests.test_real_transforms::TestIDSTIIIInt"
SAMPLE_SUBMODULE = "optimize"
EXTRA_PATH = ['/usr/lib/ccache', '/usr/lib/f90cache',
'/usr/local/lib/ccache', '/usr/local/lib/f90cache']
# ---------------------------------------------------------------------
if __doc__ is None:
__doc__ = "Run without -OO if you want usage info"
else:
__doc__ = __doc__.format(**globals())
import sys
import os
import errno
# the following multiprocessing import is necessary to prevent tests that use
# multiprocessing from hanging on >= Python3.8 (macOS) using pytest. Just the
# import is enough...
import multiprocessing
# In case we are run from the source directory, we don't want to import the
# project from there:
sys.path.pop(0)
from argparse import ArgumentParser, REMAINDER
import contextlib
import shutil
import subprocess
import time
import datetime
try:
from types import ModuleType as new_module
except ImportError: # old Python
from imp import new_module
ROOT_DIR = os.path.abspath(os.path.join(os.path.dirname(__file__)))
def main(argv):
parser = ArgumentParser(usage=__doc__.lstrip())
parser.add_argument("--verbose", "-v", action="count", default=1,
help="more verbosity")
parser.add_argument("--no-build", "-n", action="store_true", default=False,
help="do not build the project (use system installed version)")
parser.add_argument("--build-only", "-b", action="store_true", default=False,
help="just build, do not run any tests")
parser.add_argument("--doctests", action="store_true", default=False,
help="Run doctests in module")
parser.add_argument("--refguide-check", action="store_true", default=False,
help="Run refguide check (do not run regular tests.)")
parser.add_argument("--coverage", action="store_true", default=False,
help=("report coverage of project code. HTML output"
" goes under build/coverage"))
parser.add_argument("--gcov", action="store_true", default=False,
help=("enable C code coverage via gcov (requires GCC)."
" gcov output goes to build/**/*.gc*"))
parser.add_argument("--lcov-html", action="store_true", default=False,
help=("produce HTML for C code coverage information "
"from a previous run with --gcov. "
"HTML output goes to build/lcov/"))
parser.add_argument("--mode", "-m", default="fast",
help="'fast', 'full', or something that could be "
"passed to nosetests -A [default: fast]")
parser.add_argument("--submodule", "-s", default=None,
help="Submodule whose tests to run (cluster,"
" constants, ...)")
parser.add_argument("--pythonpath", "-p", default=None,
help="Paths to prepend to PYTHONPATH")
parser.add_argument("--tests", "-t", action='append',
help="Specify tests to run")
parser.add_argument("--python", action="store_true",
help="Start a Python shell with PYTHONPATH set")
parser.add_argument("--ipython", "-i", action="store_true",
help="Start IPython shell with PYTHONPATH set")
parser.add_argument("--shell", action="store_true",
help="Start Unix shell with PYTHONPATH set")
parser.add_argument("--debug", "-g", action="store_true",
help="Debug build")
parser.add_argument("--parallel", "-j", type=int, default=1,
help="Number of parallel jobs for build and testing")
parser.add_argument("--show-build-log", action="store_true",
help="Show build output rather than using a log file")
parser.add_argument("--bench", action="store_true",
help="Run benchmark suite instead of test suite")
parser.add_argument("--bench-compare", action="append", metavar="BEFORE",
help=("Compare benchmark results of current HEAD to"
" BEFORE. Use an additional "
"--bench-compare=COMMIT to override HEAD with"
" COMMIT. Note that you need to commit your "
"changes first!"
))
parser.add_argument("args", metavar="ARGS", default=[], nargs=REMAINDER,
help="Arguments to pass to Nose, Python or shell")
parser.add_argument("--pep8", action="store_true", default=False,
help="Perform pep8 check with flake8.")
parser.add_argument("--mypy", action="store_true", default=False,
help="Run mypy on the codebase")
parser.add_argument("--doc", action="append", nargs="?",
const="html-scipyorg", help="Build documentation")
args = parser.parse_args(argv)
if args.pep8:
# Lint the source using the configuration in tox.ini.
os.system("flake8 scipy benchmarks/benchmarks")
# Lint just the diff since branching off of main using a
# stricter configuration.
lint_diff = os.path.join(ROOT_DIR, 'tools', 'lint_diff.py')
os.system(lint_diff)
sys.exit(0)
if args.mypy:
sys.exit(run_mypy(args))
if args.bench_compare:
args.bench = True
args.no_build = True # ASV does the building
if args.lcov_html:
# generate C code coverage output
lcov_generate()
sys.exit(0)
if args.pythonpath:
for p in reversed(args.pythonpath.split(os.pathsep)):
sys.path.insert(0, p)
if args.gcov:
gcov_reset_counters()
if args.debug and args.bench:
print("*** Benchmarks should not be run against debug version; "
"remove -g flag ***")
if not args.no_build:
site_dir = build_project(args)
sys.path.insert(0, site_dir)
os.environ['PYTHONPATH'] = \
os.pathsep.join((site_dir, os.environ.get('PYTHONPATH', '')))
extra_argv = args.args[:]
if extra_argv and extra_argv[0] == '--':
extra_argv = extra_argv[1:]
if args.python:
if extra_argv:
# Don't use subprocess, since we don't want to include the
# current path in PYTHONPATH.
sys.argv = extra_argv
with open(extra_argv[0], 'r') as f:
script = f.read()
sys.modules['__main__'] = new_module('__main__')
ns = dict(__name__='__main__',
__file__=extra_argv[0])
exec(script, ns)
sys.exit(0)
else:
import code
code.interact()
sys.exit(0)
if args.ipython:
import IPython
IPython.embed(user_ns={})
sys.exit(0)
if args.shell:
shell = os.environ.get('SHELL', 'sh')
print("Spawning a Unix shell...")
os.execv(shell, [shell] + extra_argv)
sys.exit(1)
if args.doc:
cmd = ["make", "-Cdoc", 'PYTHON="{}"'.format(sys.executable)]
cmd += args.doc
if args.parallel:
cmd.append('SPHINXOPTS="-j{}"'.format(args.parallel))
subprocess.run(cmd, check=True)
sys.exit(0)
if args.coverage:
dst_dir = os.path.join(ROOT_DIR, 'build', 'coverage')
fn = os.path.join(dst_dir, 'coverage_html.js')
if os.path.isdir(dst_dir) and os.path.isfile(fn):
shutil.rmtree(dst_dir)
extra_argv += ['--cov-report=html:' + dst_dir]
if args.refguide_check:
cmd = [os.path.join(ROOT_DIR, 'tools', 'refguide_check.py'),
'--doctests']
if args.submodule:
cmd += [args.submodule]
os.execv(sys.executable, [sys.executable] + cmd)
sys.exit(0)
if args.bench:
# Run ASV
items = extra_argv
if args.tests:
items += args.tests
if args.submodule:
items += [args.submodule]
bench_args = []
for a in items:
bench_args.extend(['--bench', a])
if not args.bench_compare:
import scipy
print("Running benchmarks for Scipy version %s at %s"
% (scipy.__version__, scipy.__file__))
cmd = ['asv', 'run', '--dry-run', '--show-stderr',
'--python=same'] + bench_args
retval = run_asv(cmd)
sys.exit(retval)
else:
if len(args.bench_compare) == 1:
commit_a = args.bench_compare[0]
commit_b = 'HEAD'
elif len(args.bench_compare) == 2:
commit_a, commit_b = args.bench_compare
else:
p.error("Too many commits to compare benchmarks for")
# Check for uncommitted files
if commit_b == 'HEAD':
r1 = subprocess.call(['git', 'diff-index', '--quiet',
'--cached', 'HEAD'])
r2 = subprocess.call(['git', 'diff-files', '--quiet'])
if r1 != 0 or r2 != 0:
print("*"*80)
print("WARNING: you have uncommitted changes --- "
"these will NOT be benchmarked!")
print("*"*80)
# Fix commit ids (HEAD is local to current repo)
p = subprocess.Popen(['git', 'rev-parse', commit_b],
stdout=subprocess.PIPE)
out, err = p.communicate()
commit_b = out.strip()
p = subprocess.Popen(['git', 'rev-parse', commit_a],
stdout=subprocess.PIPE)
out, err = p.communicate()
commit_a = out.strip()
cmd = ['asv', 'continuous', '--show-stderr', '--factor', '1.05',
commit_a, commit_b] + bench_args
run_asv(cmd)
sys.exit(1)
if args.build_only:
sys.exit(0)
else:
try:
test, version, mod_path = import_module()
except ImportError:
# this may fail when running with --no-build, so try to detect
# an installed scipy in a subdir inside a repo
dst_dir = os.path.join(ROOT_DIR, 'build', 'testenv')
from sysconfig import get_path
py_path = get_path('platlib')
site_dir = os.path.join(dst_dir, get_path_suffix(py_path, 3))
print("Trying to import scipy from development installed path at:",
site_dir)
sys.path.insert(0, site_dir)
os.environ['PYTHONPATH'] = \
os.pathsep.join((site_dir, os.environ.get('PYTHONPATH', '')))
test, version, mod_path = import_module()
if args.submodule:
tests = [PROJECT_MODULE + "." + args.submodule]
elif args.tests:
tests = args.tests
else:
tests = None
# Run the tests
if not args.no_build:
test_dir = site_dir
else:
test_dir = os.path.join(ROOT_DIR, 'build', 'test')
if not os.path.isdir(test_dir):
os.makedirs(test_dir)
shutil.copyfile(os.path.join(ROOT_DIR, '.coveragerc'),
os.path.join(test_dir, '.coveragerc'))
cwd = os.getcwd()
try:
os.chdir(test_dir)
print("Running tests for {} version:{}, installed at:{}".format(
PROJECT_MODULE, version, mod_path))
result = test(args.mode,
verbose=args.verbose,
extra_argv=extra_argv,
doctests=args.doctests,
coverage=args.coverage,
tests=tests,
parallel=args.parallel)
finally:
os.chdir(cwd)
if isinstance(result, bool):
sys.exit(0 if result else 1)
elif result.wasSuccessful():
sys.exit(0)
else:
sys.exit(1)
def import_module():
"""
Function of import project module.
"""
__import__(PROJECT_MODULE)
test = sys.modules[PROJECT_MODULE].test
version = sys.modules[PROJECT_MODULE].__version__
mod_path = sys.modules[PROJECT_MODULE].__file__
mod_path = os.path.abspath(os.path.join(os.path.dirname(mod_path)))
return test, version, mod_path
def get_path_suffix(current_path, levels=3):
"""
This utility function is only needed for a single use further down,
in order to grab the last `levels` subdirs from the input path.
It'll always resolve to something like ``lib/python3.X/site-packages``.
Site-packages is actually 3 levels deep on all platforms, so this
function should suffice.
"""
current_new = current_path
for i in range(levels):
current_new = os.path.dirname(current_new)
return os.path.relpath(current_path, current_new)
def build_project(args):
"""
Build a dev version of the project.
Returns
-------
site_dir
site-packages directory where it was installed
"""
root_ok = [os.path.exists(os.path.join(ROOT_DIR, fn))
for fn in PROJECT_ROOT_FILES]
if not all(root_ok):
print("To build the project, run runtests.py in "
"git checkout or unpacked source")
sys.exit(1)
dst_dir = os.path.join(ROOT_DIR, 'build', 'testenv')
env = dict(os.environ)
cmd = [sys.executable, 'setup.py']
# Always use ccache, if installed
env['PATH'] = os.pathsep.join(EXTRA_PATH +
env.get('PATH', '').split(os.pathsep))
if args.debug or args.gcov:
# assume everyone uses gcc/gfortran
env['OPT'] = '-O0 -ggdb'
env['FOPT'] = '-O0 -ggdb'
if args.gcov:
from sysconfig import get_config_vars
cvars = get_config_vars()
env['OPT'] = '-O0 -ggdb'
env['FOPT'] = '-O0 -ggdb'
env['CC'] = env.get('CC', cvars['CC']) + ' --coverage'
env['CXX'] = env.get('CXX', cvars['CXX']) + ' --coverage'
env['F77'] = 'gfortran --coverage '
env['F90'] = 'gfortran --coverage '
env['LDSHARED'] = cvars['LDSHARED'] + ' --coverage'
env['LDFLAGS'] = " ".join(cvars['LDSHARED'].split()[1:]) +\
' --coverage'
cmd += ['build']
if args.parallel > 1:
cmd += ['-j', str(args.parallel)]
# Install; avoid producing eggs so SciPy can be imported from dst_dir.
cmd += ['install', '--prefix=' + dst_dir,
'--single-version-externally-managed',
'--record=' + dst_dir + 'tmp_install_log.txt']
from sysconfig import get_path
py_path = get_path('platlib')
site_dir = os.path.join(dst_dir, get_path_suffix(py_path, 3))
# easy_install won't install to a path that Python by default cannot see
# and isn't on the PYTHONPATH. Plus, it has to exist.
if not os.path.exists(site_dir):
os.makedirs(site_dir)
env['PYTHONPATH'] = os.pathsep.join((site_dir, env.get('PYTHONPATH', '')))
log_filename = os.path.join(ROOT_DIR, 'build.log')
start_time = datetime.datetime.now()
if args.show_build_log:
ret = subprocess.call(cmd, env=env, cwd=ROOT_DIR)
else:
log_filename = os.path.join(ROOT_DIR, 'build.log')
print("Building, see build.log...")
with open(log_filename, 'w') as log:
p = subprocess.Popen(cmd, env=env, stdout=log, stderr=log,
cwd=ROOT_DIR)
try:
# Wait for it to finish, and print something to indicate the
# process is alive, but only if the log file has grown (to
# allow continuous integration environments kill a hanging
# process accurately if it produces no output)
last_blip = time.time()
last_log_size = os.stat(log_filename).st_size
while p.poll() is None:
time.sleep(0.5)
if time.time() - last_blip > 60:
log_size = os.stat(log_filename).st_size
if log_size > last_log_size:
elapsed = datetime.datetime.now() - start_time
print(" ... build in progress ({0} "
"elapsed)".format(elapsed))
last_blip = time.time()
last_log_size = log_size
ret = p.wait()
except: # noqa: E722
p.terminate()
raise
elapsed = datetime.datetime.now() - start_time
if ret == 0:
print("Build OK ({0} elapsed)".format(elapsed))
else:
if not args.show_build_log:
with open(log_filename, 'r') as f:
print(f.read())
print("Build failed! ({0} elapsed)".format(elapsed))
sys.exit(1)
return site_dir
#
# GCOV support
#
def gcov_reset_counters():
print("Removing previous GCOV .gcda files...")
build_dir = os.path.join(ROOT_DIR, 'build')
for dirpath, dirnames, filenames in os.walk(build_dir):
for fn in filenames:
if fn.endswith('.gcda') or fn.endswith('.da'):
pth = os.path.join(dirpath, fn)
os.unlink(pth)
#
# LCOV support
#
LCOV_OUTPUT_FILE = os.path.join(ROOT_DIR, 'build', 'lcov.out')
LCOV_HTML_DIR = os.path.join(ROOT_DIR, 'build', 'lcov')
def lcov_generate():
try:
os.unlink(LCOV_OUTPUT_FILE)
except OSError:
pass
try:
shutil.rmtree(LCOV_HTML_DIR)
except OSError:
pass
print("Capturing lcov info...")
subprocess.call(['lcov', '-q', '-c',
'-d', os.path.join(ROOT_DIR, 'build'),
'-b', ROOT_DIR,
'--output-file', LCOV_OUTPUT_FILE])
print("Generating lcov HTML output...")
ret = subprocess.call(['genhtml', '-q', LCOV_OUTPUT_FILE,
'--output-directory', LCOV_HTML_DIR,
'--legend', '--highlight'])
if ret != 0:
print("genhtml failed!")
else:
print("HTML output generated under build/lcov/")
@contextlib.contextmanager
def working_dir(new_dir):
current_dir = os.getcwd()
try:
os.chdir(new_dir)
yield
finally:
os.chdir(current_dir)
def run_mypy(args):
if args.no_build:
raise ValueError('Cannot run mypy with --no-build')
try:
import mypy.api
except ImportError as e:
raise RuntimeError(
"Mypy not found. Please install it by running "
"pip install -r mypy_requirements.txt from the repo root"
) from e
site_dir = build_project(args)
config = os.path.join(
os.path.dirname(os.path.abspath(__file__)),
"mypy.ini",
)
with working_dir(site_dir):
# By default mypy won't color the output since it isn't being
# invoked from a tty.
os.environ['MYPY_FORCE_COLOR'] = '1'
# Change to the site directory to make sure mypy doesn't pick
# up any type stubs in the source tree.
report, errors, status = mypy.api.run([
"--config-file",
config,
PROJECT_MODULE,
])
print(report, end='')
print(errors, end='', file=sys.stderr)
return status
def run_asv(cmd):
cwd = os.path.join(os.path.abspath(os.path.dirname(__file__)),
'benchmarks')
# Always use ccache, if installed
env = dict(os.environ)
env['PATH'] = os.pathsep.join(EXTRA_PATH +
env.get('PATH', '').split(os.pathsep))
# Control BLAS/LAPACK threads
env['OPENBLAS_NUM_THREADS'] = '1'
env['MKL_NUM_THREADS'] = '1'
# Limit memory usage
sys.path.insert(0, cwd)
from benchmarks.common import set_mem_rlimit
try:
set_mem_rlimit()
except (ImportError, RuntimeError):
pass
# Run
try:
return subprocess.call(cmd, env=env, cwd=cwd)
except OSError as err:
if err.errno == errno.ENOENT:
print("Error when running '%s': %s\n" % (" ".join(cmd), str(err),))
print("You need to install Airspeed Velocity (https://airspeed-velocity.github.io/asv/)")
print("to run Scipy benchmarks")
return 1
raise
if __name__ == "__main__":
main(argv=sys.argv[1:])