_pkgdown.yml

url: https://chguiterman.github.io/dfoliatR/
template:
  bootstrap: 5
reference:
  - title: "Usage"
    desc: >
      Identifying insect defoliation and outbreak events in tree-ing growth patterns is the goal of dfoliatR.
      Two functions perform the majority of the workload. They take indexed tree-ring data and find tree-level
      defoliation events [defoliate_trees()] and then composite all trees [outbreak()] to identify
      outbreak events.
    contents:
      - defoliate_trees
      - outbreak
  - title: "Graphics"
    desc: >
      Objects created by the two functions above can be plotted via:
    contents:
      - plot_defol
      - plot_outbreak
  - title: "Summary statistics"
    contents:
      - defol_stats
      - outbreak_stats
  - title: "Helpful functions"
    contents:
      - sample_depth
      - series_names
      - get_defol_events
      - starts_with("as_")
      - starts_with("as.")
      - starts_with("is.")
  - title: "Data"
    desc: >
      Tree-ring data from four sites in New Mexico are available for users to explore and test functions.
      These include two sets of Douglas-fir host series and two separate ponderosa pine non-host chronologies.
      The samples were collected to reconstruct western spruce budwork outbreak dynamics.
    contents:
      - starts_with("dmj")
      - starts_with("efk")
  - title: "Miscileaneous"
    desc: >
      These functions are mainly called internally, but could assist in troubleshooting or in other unusual situations.
    contents:
      - gsi
      - id_defoliation
      - stack_defoliation
      - defol
      - obr
      - plot.defol