Version 1.0.2.3

1. Improve the alignment rate slightly.

Version 1.0.2.1

1. Add support of BitMapperBS to output MAPQ like Bowtie2.
2. Recalculate alignment with large or complex gaps.
3. For the '--mapstats' option, the output file name can be defined by users.
4. Add '--phred33', '--phred64', '--mp_max', '--mp_min', '--np', '--gap_open', and '--gap_extension' options.

Version 1.0.1.6

1. Remove the --pe option. The paired-end mode or the single-end mode can be determined automatically.
2. All logging information is printed to standard error.
3. If -o is not specified, the alignment results would be printed to standard output.
4. Fix a minor bug of the paired-end read name.
5. Fix a minor bug when mapping.

Version 1.0.1.2

Fixed the bug when indexing in extreme cases.