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git cloned -> test data fail #3

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nbx0 opened this issue Mar 18, 2020 · 0 comments
Open

git cloned -> test data fail #3

nbx0 opened this issue Mar 18, 2020 · 0 comments

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@nbx0
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nbx0 commented Mar 18, 2020

OS: Ubuntu 16.04
Python v 2.7.12
Perl v 5.22.1
blast v 2.2.31+
ntthal installed

I cloned this repo attempted the test. No output. When I run with bash -x I get:

$ bash -x MSSPE-design.sh ZIKV-96seqs.fasta 13 500 250 50 0.1 2 -9000 8

  • tyu=11365
    ++ basename MSSPE-design.sh
  • mygname=MSSPE-design.sh
    ++ twin=hxB
    ++ export twins=hxB
    ++ twins=hxB
    ++ '[' hxB = hxB ']'
    ++ echo ']-L'
  • valin=']-L'
    ++ more
  • export LSIN=
  • LSIN=
  • export uscrpt=MSSPE-design.sh
  • uscrpt=MSSPE-design.sh
    ++ uname
  • MSUNAME=Linux
  • export scriptstatus=Built
  • scriptstatus=Built
  • export mygname
  • export tyu
    ++ printf '%s\n' ZIKV-96seqs.fasta 13 500 250 50 0.1 2 -9000 8
    ++ cut -f2-
  • export 'yigzbn=ZIKV-96seqs.fasta
    13
    500
    250
    50
    0.1
    2
    -9000
    8'
  • yigzbn='ZIKV-96seqs.fasta
    13
    500
    250
    50
    0.1
    2
    -9000
    8'
  • '[' '!' -z ']-L' ']'
  • kill -9 11365
    Killed

Any help is appreciated!
-Ben

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