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Git cloned try test file see many not found #7

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WendyGinYu opened this issue Mar 26, 2021 · 6 comments
Open

Git cloned try test file see many not found #7

WendyGinYu opened this issue Mar 26, 2021 · 6 comments

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@WendyGinYu
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Hi,
I have cloned the code and installed all the listed dependencies. When try the test file I got many error like below:
sh: 1999: xEG#LL1NSroQhncre46yjH4XzB39JsMfjq38VJeBv45u8rT7cKtpLrb65zK5849L: not found
sh: 2000: IyEvYmluL2Jhc2gKIyMjIyMjIyMjIyMjIyMjIyMgIFNVQlNDUklQVElPTiBCRUdJTiAgIyMjIyMj: not found
I guess it may have something to do with the blast package. I tried to reinstall the blast 2.11.0 but it remains.

@mcnaber
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mcnaber commented Jun 10, 2021

Hello there, '
I am running into the same issue when I try to run the program. Were you able to resolve this? Thanks.

@sen1019san
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@mcnaber I also get stuck in the same problem after trying to run the demo command, have you solve the problem? Thanks a lot for any answers.

@kf-wei
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kf-wei commented May 5, 2022

@WendyGinYu @mcnaber @sen1019san I met the same problem . have you solved this problem? Thanks for any answers ...

@JakeDaddiego
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I have also got the same issue. Has anyone managed to solve this? Any help would be greatly appreciated!

@MaestSi
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MaestSi commented May 20, 2023

Same here, I'm also having this issue with test data. Any help from the developers would be highly appreciated.
SM

@MaestSi
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MaestSi commented May 24, 2023

Dear all (@JakeDaddiego @kf-wei @sen1019san @mcnaber @WendyGinYu @cheerupgirls @ShenWei-wei @Guofengyu ),
since I was not able to run MSSPE pipeline too, I tried rewriting the code as a NextFlow pipeline. You can find the code here. Feel free to test it and let me know if you find any bugs or if there are any improvements that can be made.
Thanks,
Simone

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6 participants