Add description for the parameters exposed to the workflow

[anwarMZ]

Description of the bug

Add the description of each parameter to the workflow template

Command used and terminal output

nextflow run main.nf --help

Typical pipeline command:

  nextflow run nf-core/seqqc --input samplesheet.csv --fasta reference.fa -profile docker

Sequencing parameters
  --mode                        [string]  null [default: illumina]
  --nanopore_summary_file       [string]  null
  --nanopore_summary_file_id    [string]  null

Assembly QC
  --checkm_db                   [string]  null [default: "null"]
  --combine_quast               [boolean] null
  --busco_lineage               [string]  null [default: auto]
  --busco_lineages_path         [string]  null
  --busco_config                [boolean] null
  --skip_checkm                 [boolean] null
  --skip_quast                  [boolean] null
  --skip_busco                  [boolean] null
  --reference_genome_fasta      [string]  null
  --reference_genome_gff        [string]  null
  --skip_assembly_qc            [boolean] null
  --skip_rmlst                  [boolean] null

Relevant files

nextflow_schema.json needs to be updated

System information

No response