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setup.cfg
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[metadata]
name = mira-multiome
version = attr: mira.__version__
description = Single-cell multiomics data analysis
long_description = file: README.rst
license = BSD3 License
classifiers =
License :: OSI Approved :: BSD License
Environment :: Console
Intended Audience :: Developers
Intended Audience :: Science/Research
Natural Language :: English
Operating System :: MacOS :: MacOS X
Operating System :: POSIX :: Linux
Programming Language :: Python :: 3
Programming Language :: Python :: 3.5
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
[options]
zip_safe = True
include_package_data = True
packages = find:
python_requires = >=3.6,<3.12
install_requires =
torch>=1.8.0,<=2.0.0
pyro-ppl>=1.5.2,<2
networkx>=2.3,<=2.5
optuna>=2.8,<3
anndata>=0.7.6,<1
pyfaidx>=0.5,<1
matplotlib>=3.7,<4
scikit-learn>=0.24,<1.4
scipy<=1.10.2
lisa2>=2.3.0
requests>=2,<3
mira-moods>=1.9.4.2
sqlalchemy<2
tqdm
tensorboard
[options.extras_require]
docs =
sphinx>=4
nbsphinx
sphinx-panels
pydata-sphinx-theme
sphinx-copybutton
numpydoc
ipython
redis =
redis
[options.package_data]
* = *.jaspar, *.ini, Snakefile
[options.packages.find]
exclude =
examples*
tools*
docs*
miscdocs*