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exercise4_counting_blobs.md

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Exercise 4: Counting blobs.

Setup a workflow for counting blobs in ImageJ's blobs.gif example image. Use these functions:

  • Gaussian Blur
  • Otsu's threshold method
  • Connected Component Labeling
  • Measure maximum intensity in the resulting label image

In order to achieve this, it is recommended to use the Macro recorder or auto-completion in the script editor.

Optional: Write this script in Fijis Jython or Icy JavaScript. If you use Icy, turn on CLIJs recorder and execute the operations from the menu.

Image

Image