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exercise5_interactive_workflow_design.md

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Exercise 5: Interactive workflow design

Setup a workflow for counting blobs in ImageJ's blobs.gif example image using the interactive workflow design tool. Use CLIJ2 functions only, for example:

  • Gaussian Blur
  • Greater
  • Connected Component Labeling

Image

Export the workflow as ImageJ Macro script for and Fiji Jython.

Optional: Export the workflow as Icy Javascript, as Icy protocol and for QuPath as groovy script. Feel free to generate a Fiji plugin.

Furthermore, if you only used operations, which are "py" compatbile, export a clEsperanto-based Jupyter notebook and a Python script that uses Napari.

Image