CBC Tutorials with Clarke 📖

Welcome to the CBC tutorials repository!

This is where you can find a variety of helpful tips and tricks for phylogenetic analyses, and just general neat things to do in R. Please email me at vsteenderen@gmail.com if you have any questions or suggestions, or if you have some useful tips that you would like to share!

📌 Each tutorial folder contains an instruction file with the extension .md

For phylogenetic tutorials, you need the following software:

AliView http://ormbunkar.se/aliview/ or https://github.com/AliView/AliView
Chromas (free version 2.6.6) http://technelysium.com.au/wp/chromas/

BioEdit is also widely used, but I prefer AliView as it can be used on multiple operating systems https://bioedit.software.informer.com/7.2/

FigTree https://github.com/rambaut/figtree/releases
Notepad++ https://notepad-plus-plus.org/downloads/
PopART http://popart.otago.ac.nz/downloads.shtml
R https://cran.r-project.org/bin/windows/base/
RStudio https://rstudio.com/products/rstudio/download/#download
SplitsTree https://splitstree4.software.informer.com/download/
STRUCTURE https://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/html/structure.html
Tracer https://github.com/beast-dev/tracer/releases