README

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RNASEQR - A streamlined and accurate RNA-seq sequence analysis program 
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RNASEQR is a nucleotide sequence mapper/aligner and is designed specifically for RNA-seq data analysis. It takes advantage of the annotated transcripts and genomic reference sequences to obtain high quality mapping/alignment results. Therefore, RNASEQR may not have a better performance when a genome-wide transcriptomic annotation is unavailable. Fortunately, comprehensive transcriptomic annotation is available for most model organisms.


===  How to Cite RNASEQR  ===
RNASEQR - A streamlined and accurate RNA-seq sequence analysis program
Leslie Y Chen, Kuo-Chen Wei, Abner C.-Y. Huang, Kai Wang, Chiung-Yin Huang, Danielle Yi, Chuan Yi Tang, David J. Galas, Leroy E. Hood
Nucl. Acids Res. (2011) doi: 10.1093/nar/gkr1248


===  DOCUMENTATION ===
See MANUAL_V1.0.html


===  LICENSE ===
GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007


=== INQUIRY ===

Please contact Dr Leslie Chen for any inquiry.
 
Leslie Chen PhD
Research Scientist, Institute for Systems Biology
lchen (AT) systemsbiology (DOT) org
chenyyl (AT) gmail (DOT) com