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⚡ optimize samtools/depth step #73

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1 of 3 tasks
bunop opened this issue Apr 10, 2024 · 0 comments · Fixed by #75
Closed
1 of 3 tasks

⚡ optimize samtools/depth step #73

bunop opened this issue Apr 10, 2024 · 0 comments · Fixed by #75
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enhancement New feature or request performance Improve the performance or better resource management
Milestone
release v0.7.0

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@bunop
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bunop commented Apr 10, 2024 •
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  • use bgzip with multi-threads when creating samtools/depth
  • try to split samtools/depth by chromosomes
  • raise samtools/depth required time
@bunop bunop added enhancement New feature or request performance Improve the performance or better resource management labels Apr 10, 2024
@bunop bunop added this to the release v0.7.0 milestone Apr 10, 2024
This was referenced Apr 11, 2024
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@bunop bunop closed this as completed in #75 Apr 11, 2024
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enhancement New feature or request performance Improve the performance or better resource management
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release v0.7.0
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🔖 release v0.6.1 cnr-ibba/nf-resequencing-mem
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