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<!DOCTYPE html>
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<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.553">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<meta name="author" content="Eduard Klapwijk">
<title>Code for Figures 1-2 based on Cohen’s d</title>
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<div class="quarto-title">
<h1 class="title">Code for Figures 1-2 based on Cohen’s d</h1>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Author</div>
<div class="quarto-title-meta-contents">
<p>Eduard Klapwijk </p>
</div>
</div>
</div>
</header>
<p>Load libraries to produce figures:</p>
<p>Set seed and create Figure 1a for the Feedback task DLPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate differences (unstandardized and Cohen's d)</span></span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a>feedback_fig <span class="ot"><-</span> <span class="fu">estim_diff</span>(<span class="at">data =</span> feedback,</span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"mfg_learning"</span>,</span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a> <span class="st">"mfg_application"</span>),</span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">271</span>, </span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"A. Feedback DLPFC"</span>)</span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 1a</span></span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_cohens_d</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-1a" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-1a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-1a-1.png" id="fig-1a" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-1a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 1
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 2a for the Feedback task DLPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 2a</span></span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_d_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-2a" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-2a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-2a-1.png" id="fig-2a" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-2a-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 2
</figcaption>
</figure>
</div>
</div>
</div>
<p>Set seed and create Figure 1b for the Gambling task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate differences (unstandardized and Cohen's d)</span></span>
<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a>gambling_fig <span class="ot"><-</span> <span class="fu">estim_diff</span>(<span class="at">data =</span> gambling, </span>
<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"lnacc_self_win"</span>, </span>
<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a> <span class="st">"lnacc_self_loss"</span>), </span>
<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">221</span>, </span>
<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"B. Gambling NAcc"</span>)</span>
<span id="cb3-11"><a href="#cb3-11" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 1b</span></span>
<span id="cb3-12"><a href="#cb3-12" aria-hidden="true" tabindex="-1"></a>gambling_fig<span class="sc">$</span>fig_cohens_d</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-1b" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-1b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-1b-1.png" id="fig-1b" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-1b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 3
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 2b for the Gambling task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 2b</span></span>
<span id="cb4-2"><a href="#cb4-2" aria-hidden="true" tabindex="-1"></a>gambling_fig<span class="sc">$</span>fig_d_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-2b" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-2b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-2b-1.png" id="fig-2b" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-2b-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 4
</figcaption>
</figure>
</div>
</div>
</div>
<p>Set seed and create Figure 1c for the Self-evaluations task mPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate differences (unstandardized and Cohen's d)</span></span>
<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a>selfeval_fig <span class="ot"><-</span> <span class="fu">estim_diff</span>(<span class="at">data =</span> self_eval, </span>
<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"mpfc_self"</span>, </span>
<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a> <span class="st">"mpfc_control"</span>),</span>
<span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">149</span>, </span>
<span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb5-10"><a href="#cb5-10" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"C. Self-evaluations mPFC"</span>)</span>
<span id="cb5-11"><a href="#cb5-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb5-12"><a href="#cb5-12" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 1c</span></span>
<span id="cb5-13"><a href="#cb5-13" aria-hidden="true" tabindex="-1"></a>selfeval_fig<span class="sc">$</span>fig_cohens_d</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-1c" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-1c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-1c-1.png" id="fig-1c" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-1c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 5
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 2c for the Self-evaluations task mPFC ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb6"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 2c</span></span>
<span id="cb6-2"><a href="#cb6-2" aria-hidden="true" tabindex="-1"></a>selfeval_fig<span class="sc">$</span>fig_d_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-2c" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-2c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-2c-1.png" id="fig-2c" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-2c-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 6
</figcaption>
</figure>
</div>
</div>
</div>
<p>Set seed and create Figure 1d for the Gaining for self task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="co"># set seed</span></span>
<span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a><span class="fu">set.seed</span>(<span class="dv">1234</span>)</span>
<span id="cb7-3"><a href="#cb7-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-4"><a href="#cb7-4" aria-hidden="true" tabindex="-1"></a><span class="co"># Estimate differences (unstandardized and Cohen's d)</span></span>
<span id="cb7-5"><a href="#cb7-5" aria-hidden="true" tabindex="-1"></a>vicar_char_fig <span class="ot"><-</span> <span class="fu">estim_diff</span>(<span class="at">data =</span> vicar_char, </span>
<span id="cb7-6"><a href="#cb7-6" aria-hidden="true" tabindex="-1"></a> <span class="at">vars_of_interest =</span> <span class="fu">c</span>(<span class="st">"nacc_selfgain"</span>, </span>
<span id="cb7-7"><a href="#cb7-7" aria-hidden="true" tabindex="-1"></a> <span class="st">"nacc_bothnogain"</span>),</span>
<span id="cb7-8"><a href="#cb7-8" aria-hidden="true" tabindex="-1"></a> <span class="at">sample_size =</span> <span class="dv">20</span><span class="sc">:</span><span class="dv">156</span>, </span>
<span id="cb7-9"><a href="#cb7-9" aria-hidden="true" tabindex="-1"></a> <span class="at">k =</span> <span class="dv">1000</span>, </span>
<span id="cb7-10"><a href="#cb7-10" aria-hidden="true" tabindex="-1"></a> <span class="at">name =</span> <span class="st">"D. Gaining self NAcc"</span>)</span>
<span id="cb7-11"><a href="#cb7-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb7-12"><a href="#cb7-12" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 1d</span></span>
<span id="cb7-13"><a href="#cb7-13" aria-hidden="true" tabindex="-1"></a>vicar_char_fig<span class="sc">$</span>fig_cohens_d</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-1d" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-1d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-1d-1.png" id="fig-1d" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-1d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 7
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 2d for the Gaining for self task NAcc ROI:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb8"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 2d</span></span>
<span id="cb8-2"><a href="#cb8-2" aria-hidden="true" tabindex="-1"></a>vicar_char_fig<span class="sc">$</span>fig_d_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-2d" class="quarto-figure quarto-figure-center quarto-float anchored" width="672">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-2d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-2d-1.png" id="fig-2d" class="img-fluid figure-img" width="672">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig quarto-uncaptioned" id="fig-2d-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 8
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 1 (4 data sets combined):</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 1 using patchwork library</span></span>
<span id="cb9-2"><a href="#cb9-2" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_cohens_d <span class="sc">+</span> gambling_fig<span class="sc">$</span>fig_cohens_d <span class="sc">+</span> selfeval_fig<span class="sc">$</span>fig_cohens_d <span class="sc">+</span> vicar_char_fig<span class="sc">$</span>fig_cohens_d</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-1-total" class="quarto-figure quarto-figure-center quarto-float anchored">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-1-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-1-total-1.png" class="img-fluid figure-img" width="960">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-1-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 9: Estimates of task effects for five different sample sizes (starting with <span class="math inline">\(N=20\)</span>, then 1/5th parts of the total dataset). For each sample size 10 randomly chosen HDCI’s out of the 1000 HDCI’s computed are displayed (in light blue, permutation numbers used are displayed to the right of each subfigure). The average estimate with credible interval summarizing the 1000 HDCI’s for each sample size are plotted in reddish purple. DLPFC = dorsolateral prefrontal cortex; mPFC = medial prefrontal cortex; NAcc = nucleus accumbens.
</figcaption>
</figure>
</div>
</div>
</div>
<p>Plot Figure 2 (4 data sets combined):</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb10"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" aria-hidden="true" tabindex="-1"></a><span class="co"># plot figure 2 using patchwork library</span></span>
<span id="cb10-2"><a href="#cb10-2" aria-hidden="true" tabindex="-1"></a>feedback_fig<span class="sc">$</span>fig_d_nozero <span class="sc">+</span> gambling_fig<span class="sc">$</span>fig_d_nozero <span class="sc">+</span> selfeval_fig<span class="sc">$</span>fig_d_nozero <span class="sc">+</span> vicar_char_fig<span class="sc">$</span>fig_d_nozero</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div id="fig-2-total" class="quarto-figure quarto-figure-center quarto-float anchored">
<figure class="quarto-float quarto-float-fig figure">
<div aria-describedby="fig-2-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
<img src="figures-cohens_d_files/figure-html/fig-2-total-1.png" class="img-fluid figure-img" width="960">
</div>
<figcaption class="quarto-float-caption-bottom quarto-float-caption quarto-float-fig" id="fig-2-total-caption-0ceaefa1-69ba-4598-a22c-09a6ac19f8ca">
Figure 10: For each task, for five different sample sizes (starting with <span class="math inline">\(n=20\)</span>, then 1/5th parts of the total dataset), the proportion of intervals not containing the value 0 is plotted in reddish purple.
</figcaption>
</figure>
</div>
</div>
</div>
<p>Extract numbers to make table 2:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="co"># first extract tibble from results (select mean only)</span></span>
<span id="cb11-2"><a href="#cb11-2" aria-hidden="true" tabindex="-1"></a>feedback_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(feedback_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-3"><a href="#cb11-3" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span>
<span id="cb11-4"><a href="#cb11-4" aria-hidden="true" tabindex="-1"></a>gambling_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(gambling_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-5"><a href="#cb11-5" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span>
<span id="cb11-6"><a href="#cb11-6" aria-hidden="true" tabindex="-1"></a>selfeval_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(selfeval_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-7"><a href="#cb11-7" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span>
<span id="cb11-8"><a href="#cb11-8" aria-hidden="true" tabindex="-1"></a>gaining_sum <span class="ot"><-</span> <span class="fu">as_tibble</span>(vicar_char_fig<span class="sc">$</span>tbl_select) <span class="sc">%>%</span></span>
<span id="cb11-9"><a href="#cb11-9" aria-hidden="true" tabindex="-1"></a> dplyr<span class="sc">::</span><span class="fu">filter</span>(permutation <span class="sc">==</span> <span class="st">"Overall"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<p>Use numbers to produce a table in text:</p>
<table class="table">
<colgroup>
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
<col style="width: 14%">
</colgroup>
<thead>
<tr class="header">
<th>task</th>
<th>brain region</th>
<th>n = 20</th>
<th>n = 2/5</th>
<th>n = 3/5</th>
<th>n = 4/5</th>
<th>N = total</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Feedback</td>
<td>DLPFC</td>
<td><strong>2.03</strong> (1.29, 2.76)</td>
<td><strong>1.89</strong> (1.54, 2.25), <em>n</em> = 70</td>
<td><strong>1.88</strong> (1.62, 2.15), <em>n</em> = 120</td>
<td><strong>1.87</strong> (1.65, 2.1), <em>n</em> = 170</td>
<td><strong>1.87</strong> (1.69, 2.04), <em>N</em> = 271</td>
</tr>
<tr class="even">
<td>Gambling</td>
<td>NAcc</td>
<td><strong>0.8</strong> (0.25, 1.34)</td>
<td><strong>0.74</strong> (0.45, 1.03), <em>n</em> = 60</td>
<td><strong>0.73</strong> (0.51, 0.96), <em>n</em> = 100</td>
<td><strong>0.73</strong> (0.54, 0.92), <em>n</em> = 140</td>
<td><strong>0.73</strong> (0.58, 0.88), <em>N</em> = 221</td>
</tr>
<tr class="odd">
<td>Self-evaluations</td>
<td>mPFC</td>
<td><strong>0.5</strong> (0.02, 0.98)</td>
<td><strong>0.47</strong> (0.17, 0.77), <em>n</em> = 46</td>
<td><strong>0.46</strong> (0.22, 0.7), <em>n</em> = 72</td>
<td><strong>0.46</strong> (0.26, 0.66), <em>n</em> = 98</td>
<td><strong>0.46</strong> (0.29, 0.62), <em>N</em> = 149</td>
</tr>
<tr class="even">
<td>Gaining self</td>
<td>NAcc</td>
<td><strong>0.64</strong> (0.14, 1.14)</td>
<td><strong>0.59</strong> (0.27, 0.91), <em>n</em> = 47</td>
<td><strong>0.58</strong> (0.32, 0.84), <em>n</em> = 74</td>
<td><strong>0.58</strong> (0.36, 0.8), <em>n</em> = 101</td>
<td><strong>0.57</strong> (0.39, 0.75), <em>N</em> = 156</td>
</tr>
</tbody>
</table>
</main>
<!-- /main column -->
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const lines = annoteSpan.getAttribute("data-code-lines").split(",");
const lineIds = lines.map((line) => {
return targetCell + "-" + line;
})
let top = null;
let height = null;
let parent = null;
if (lineIds.length > 0) {
//compute the position of the single el (top and bottom and make a div)
const el = window.document.getElementById(lineIds[0]);
top = el.offsetTop;
height = el.offsetHeight;
parent = el.parentElement.parentElement;
if (lineIds.length > 1) {
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
height = bottom - top;
}
if (top !== null && height !== null && parent !== null) {
// cook up a div (if necessary) and position it
let div = window.document.getElementById("code-annotation-line-highlight");
if (div === null) {
div = window.document.createElement("div");
div.setAttribute("id", "code-annotation-line-highlight");
div.style.position = 'absolute';
parent.appendChild(div);
}
div.style.top = top - 2 + "px";
div.style.height = height + 4 + "px";
div.style.left = 0;
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
if (gutterDiv === null) {
gutterDiv = window.document.createElement("div");
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
gutterDiv.style.position = 'absolute';
const codeCell = window.document.getElementById(targetCell);
const gutter = codeCell.querySelector('.code-annotation-gutter');
gutter.appendChild(gutterDiv);
}
gutterDiv.style.top = top - 2 + "px";
gutterDiv.style.height = height + 4 + "px";
}
selectedAnnoteEl = annoteEl;
}
};
const unselectCodeLines = () => {
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
elementsIds.forEach((elId) => {
const div = window.document.getElementById(elId);
if (div) {
div.remove();
}
});
selectedAnnoteEl = undefined;
};
// Handle positioning of the toggle
window.addEventListener(
"resize",
throttle(() => {
elRect = undefined;
if (selectedAnnoteEl) {
selectCodeLines(selectedAnnoteEl);
}
}, 10)
);
function throttle(fn, ms) {
let throttle = false;
let timer;
return (...args) => {
if(!throttle) { // first call gets through
fn.apply(this, args);
throttle = true;
} else { // all the others get throttled
if(timer) clearTimeout(timer); // cancel #2
timer = setTimeout(() => {
fn.apply(this, args);
timer = throttle = false;
}, ms);
}
};
}
// Attach click handler to the DT
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
for (const annoteDlNode of annoteDls) {
annoteDlNode.addEventListener('click', (event) => {
const clickedEl = event.target;
if (clickedEl !== selectedAnnoteEl) {
unselectCodeLines();
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
if (activeEl) {
activeEl.classList.remove('code-annotation-active');
}
selectCodeLines(clickedEl);
clickedEl.classList.add('code-annotation-active');
} else {
// Unselect the line
unselectCodeLines();
clickedEl.classList.remove('code-annotation-active');
}
});
}
const findCites = (el) => {
const parentEl = el.parentElement;
if (parentEl) {
const cites = parentEl.dataset.cites;
if (cites) {
return {
el,
cites: cites.split(' ')
};
} else {
return findCites(el.parentElement)
}
} else {
return undefined;
}
};
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
for (var i=0; i<bibliorefs.length; i++) {
const ref = bibliorefs[i];
const citeInfo = findCites(ref);
if (citeInfo) {
tippyHover(citeInfo.el, function() {
var popup = window.document.createElement('div');
citeInfo.cites.forEach(function(cite) {
var citeDiv = window.document.createElement('div');
citeDiv.classList.add('hanging-indent');
citeDiv.classList.add('csl-entry');
var biblioDiv = window.document.getElementById('ref-' + cite);
if (biblioDiv) {
citeDiv.innerHTML = biblioDiv.innerHTML;
}
popup.appendChild(citeDiv);
});
return popup.innerHTML;
});
}
}
});
</script>
</div> <!-- /content -->
</body></html>