From 0b31c1ede0b1d62dd9ec833a8b07c73768a47734 Mon Sep 17 00:00:00 2001 From: conda-forge-admin Date: Fri, 22 Nov 2024 14:46:50 +0000 Subject: [PATCH] Removed recipe (r-mrmlm) after converting into feedstock. [ci skip] --- recipes/r-mrmlm/bld.bat | 2 - recipes/r-mrmlm/build.sh | 3 - recipes/r-mrmlm/meta.yaml | 115 -------------------------------------- 3 files changed, 120 deletions(-) delete mode 100644 recipes/r-mrmlm/bld.bat delete mode 100644 recipes/r-mrmlm/build.sh delete mode 100644 recipes/r-mrmlm/meta.yaml diff --git a/recipes/r-mrmlm/bld.bat b/recipes/r-mrmlm/bld.bat deleted file mode 100644 index 01bc5eadf1152..0000000000000 --- a/recipes/r-mrmlm/bld.bat +++ /dev/null @@ -1,2 +0,0 @@ -"%R%" CMD INSTALL --build . %R_ARGS% -IF %ERRORLEVEL% NEQ 0 exit /B 1 diff --git a/recipes/r-mrmlm/build.sh b/recipes/r-mrmlm/build.sh deleted file mode 100644 index b8d2635525637..0000000000000 --- a/recipes/r-mrmlm/build.sh +++ /dev/null @@ -1,3 +0,0 @@ -#!/bin/bash -export DISABLE_AUTOBREW=1 -${R} CMD INSTALL --build . ${R_ARGS} diff --git a/recipes/r-mrmlm/meta.yaml b/recipes/r-mrmlm/meta.yaml deleted file mode 100644 index 75cd91f476a5b..0000000000000 --- a/recipes/r-mrmlm/meta.yaml +++ /dev/null @@ -1,115 +0,0 @@ -{% set version = '5.0.1' %} -{% set posix = 'm2-' if win else '' %} -{% set native = 'm2w64-' if win else '' %} - -package: - name: r-mrmlm - version: {{ version|replace("-", "_") }} - -source: - url: - - {{ cran_mirror }}/src/contrib/mrMLM_{{ version }}.tar.gz - - {{ cran_mirror }}/src/contrib/Archive/mrMLM/mrMLM_{{ version }}.tar.gz - sha256: 0f2d3e179b52fc2cb3d52c8b83975b20d8d18eaca30f2f87fa3dfbc3eee65b7c - -build: - merge_build_host: True # [win] - number: 0 - rpaths: - - lib/R/lib/ - - lib/ - missing_dso_whitelist: - - '*/R.dll' # [win] - - '*/Rblas.dll' # [win] - - '*/Rlapack.dll' # [win] - -requirements: - build: - - {{ compiler('c') }} # [not win] - - {{ stdlib('c') }} # [not win] - - {{ compiler('m2w64_c') }} # [win] - - {{ stdlib('m2w64_c') }} # [win] - - {{ compiler('cxx') }} # [not win] - - {{ compiler('m2w64_cxx') }} # [win] - - {{ posix }}filesystem # [win] - - {{ posix }}make - - {{ posix }}sed # [win] - - {{ posix }}coreutils # [win] - - {{ posix }}zip # [win] - - cross-r-base {{ r_base }} # [build_platform != target_platform] - host: - - r-base - - r-bedmatrix - - r-coin >=1.1_0 - - r-data.table - - r-doparallel - - r-foreach - - r-lars - - r-ncvreg - - r-rcpp >=0.12.14 - - r-rcppeigen - - r-sampling - - r-sbl - run: - - r-base - - {{ native }}gcc-libs # [win] - - r-bedmatrix - - r-coin >=1.1_0 - - r-data.table - - r-doparallel - - r-foreach - - r-lars - - r-ncvreg - - r-rcpp >=0.12.14 - - r-rcppeigen - - r-sampling - - r-sbl - -test: - commands: - - $R -e "library('mrMLM')" # [not win] - - "\"%R%\" -e \"library('mrMLM')\"" # [win] - -about: - home: https://CRAN.R-project.org/package=mrMLM - license: GPL-2.0-or-later - summary: Conduct multi-locus genome-wide association study under the framework of multi-locus - random-SNP-effect mixed linear model (mrMLM). First, each marker on the genome is - scanned. Bonferroni correction is replaced by a less stringent selection criterion - for significant test. Then, all the markers that are potentially associated with - the trait are included in a multi-locus genetic model, their effects are estimated - by empirical Bayes, and all the nonzero effects were further identified by likelihood - ratio test for significant QTL. The program may run on a desktop or laptop computers. - If marker genotypes in association mapping population are almost homozygous, these - methods in this software are very effective. If there are many heterozygous marker - genotypes, the IIIVmrMLM software is recommended. Wen YJ, Zhang H, Ni YL, Huang - B, Zhang J, Feng JY, Wang SB, Dunwell JM, Zhang YM, Wu R (2018, ), - and Li M, Zhang YW, Zhang ZC, Xiang Y, Liu MH, Zhou YH, Zuo JF, Zhang HQ, Chen Y, - Zhang YM (2022, ). - license_family: GPL2 - license_file: - - {{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2 - - {{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3 - -extra: - recipe-maintainers: - - conda-forge/r - -# Package: mrMLM -# Type: Package -# Title: Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS -# Version: 5.0.1 -# Date: 2022-3-27 -# Maintainer: Yuan-Ming Zhang -# Contact: Yuan-Ming Zhang -# Authors@R: c( person("Ya-Wen", "Zhang", role="aut") , person("Jing-Tian", "Wang", role="aut") , person("Pei", "Li", role="aut") , person("Yuan-Ming", "Zhang", role=c("aut","cre"), email="soyzhang@mail.hzau.edu.cn", comment=c(ORCID="0000-0003-2317-2190")) ) -# Description: Conduct multi-locus genome-wide association study under the framework of multi-locus random-SNP-effect mixed linear model (mrMLM). First, each marker on the genome is scanned. Bonferroni correction is replaced by a less stringent selection criterion for significant test. Then, all the markers that are potentially associated with the trait are included in a multi-locus genetic model, their effects are estimated by empirical Bayes, and all the nonzero effects were further identified by likelihood ratio test for significant QTL. The program may run on a desktop or laptop computers. If marker genotypes in association mapping population are almost homozygous, these methods in this software are very effective. If there are many heterozygous marker genotypes, the IIIVmrMLM software is recommended. Wen YJ, Zhang H, Ni YL, Huang B, Zhang J, Feng JY, Wang SB, Dunwell JM, Zhang YM, Wu R (2018, ), and Li M, Zhang YW, Zhang ZC, Xiang Y, Liu MH, Zhou YH, Zuo JF, Zhang HQ, Chen Y, Zhang YM (2022, ). -# Depends: R (>= 3.5.0),lars -# Imports: Rcpp (>= 0.12.14),methods,foreach,ncvreg,coin(>= 1.1-0),sampling,data.table,doParallel,sbl,BEDMatrix -# License: GPL (>= 2) -# LinkingTo: Rcpp, RcppEigen -# NeedsCompilation: yes -# Packaged: 2022-03-27 08:03:33 UTC; Administrator -# Repository: CRAN -# Date/Publication: 2022-03-27 08:50:02 UTC -# Author: Ya-Wen Zhang [aut], Jing-Tian Wang [aut], Pei Li [aut], Yuan-Ming Zhang [aut, cre] ()