Test MPC #221
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| name: Test MPC | |
| on: | |
| # Trigger tests on push | |
| workflow_dispatch: | |
| workflow_call: | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| # '*' is a special character in YAML, so string must be quoted | |
| - cron: "0 8 * * *" | |
| jobs: | |
| build: | |
| if: "!(contains(github.event.head_commit.message, '[ci skip]') || contains(github.event.head_commit.message, '[skip ci]'))" | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/fenics/test-env:nightly-mpich | |
| strategy: | |
| matrix: | |
| build_mode: [Release, Debug] | |
| petsc_arch: [real, complex] | |
| # Due to: https://gitlab.com/petsc/petsc/-/issues/1288 | |
| CXX: [c++] | |
| #, clang++] | |
| CC: [cc] | |
| #, clang] | |
| # exclude: | |
| # - CC: cc | |
| # CXX: clang++ | |
| # - CC: clang | |
| # CXX: c++ | |
| env: | |
| DOLFINX_BRANCH: "main" | |
| BASIX_BRANCH: "main" | |
| UFL_BRANCH: "main" | |
| FFCX_BRANCH: "main" | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| PETSC_ARCH: "linux-gnu-${{ matrix.petsc_arch }}-32" | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 | |
| OMPI_MCA_plm: isolated | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| OMPI_MCA_mpi_yield_when_idle: 1 | |
| OMPI_MCA_hwloc_base_binding_policy: none | |
| HDF5_MPI: "ON" | |
| HDF5_DIR: "/usr/local/" | |
| MPC_BUILD_MODE: ${{ matrix.build_mode }} | |
| MPC_CMAKE_CXX_FLAGS: "-Wall -Werror -g -pedantic -Ofast -march=native" | |
| PYTHONPATH: "/usr/local/dolfinx-${PETSC_TYPE}/lib/python3.10/dist-packages:/usr/local/lib" | |
| LD_LIBRARY_PATH: "/usr/local/petsc/${PETSC_ARCH}/lib/:/usr/local" | |
| DEB_PYTHON_INSTALL_LAYOUT: deb_system | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install clang | |
| if: ${{ matrix.CC }} == "clang" | |
| run: | | |
| apt-get update | |
| apt-get install -y clang | |
| - name: upgrade pip | |
| run: python3 -m pip install --upgrade setuptools pip | |
| - name: Flake8 code | |
| run: flake8 python/ | |
| - name: Mypy check | |
| run: | | |
| python3 -m pip install mypy | |
| cd python | |
| python3 -m mypy . --exclude=build | |
| - name: Install h5py (https://github.com/h5py/h5py/issues/2222) | |
| run: | | |
| python3 -m pip install mpi4py cython numpy | |
| python3 -m pip install --no-cache-dir --no-binary=h5py h5py --no-build-isolation | |
| - name: Install DOLFINx | |
| uses: ./.github/actions/install-dolfinx | |
| with: | |
| dolfinx: ${{ env.DOLFINX_BRANCH }} | |
| ufl: ${{ env.UFL_BRANCH }} | |
| basix: ${{ env.BASIX_BRANCH }} | |
| ffcx: ${{ env.FFCX_BRANCH }} | |
| petsc_arch: ${{ env.PETSC_ARCH }} | |
| - name: Install DOLFINx-MPC (C++) | |
| run: | | |
| cmake -G Ninja -B build-dir -DCMAKE_BUILD_TYPE=${MPC_BUILD_MODE} -DCMAKE_CXX_FLAGS="${MPC_CMAKE_CXX_FLAGS}" -S cpp/ | |
| cmake --build build-dir --parallel 3 | |
| cmake --install build-dir | |
| - name: Install DOLFINx-MPC (Python) | |
| run: CXX_FLAGS="${MPC_CMAKE_CXX_FLAGS}" python3 -m pip -v install python/[test] | |
| - name: Run tests (serial) | |
| run: coverage run --rcfile=.coveragerc -m mpi4py -m pytest python/tests/ | |
| - name: Run tests (2 processes) | |
| run: mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py -m pytest python/tests/ -vs | |
| - name: Run tests (3 processes) | |
| run: mpirun -n 3 coverage run --rcfile=.coveragerc -m mpi4py -m pytest python/tests/ | |
| - name: Run tests (4 processes) | |
| run: mpirun -n 4 coverage run --rcfile=.coveragerc -m mpi4py -m pytest python/tests/ | |
| - name: Run benchmarks | |
| run: | | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/benchmarks/bench_periodic.py --nref=2 --tet --gamg --timings | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/benchmarks/bench_elasticity_edge.py --nref=2 --gamg --timings | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/benchmarks/bench_contact_3D.py | |
| - name: Run demos (serial) | |
| run: | | |
| mkdir -p meshes | |
| mkdir -p results | |
| coverage run --rcfile=.coveragerc python/demos/demo_elasticity.py | |
| coverage run --rcfile=.coveragerc python/demos/demo_periodic_geometrical.py | |
| coverage run --rcfile=.coveragerc python/demos/demo_stokes.py | |
| coverage run --rcfile=.coveragerc python/demos/demo_periodic3d_topological.py | |
| coverage run --rcfile=.coveragerc python/demos/demo_elasticity_disconnect_2D.py | |
| coverage run --rcfile=.coveragerc python/demos/demo_elasticity_disconnect.py | |
| coverage run --rcfile=.coveragerc python/demos/demo_periodic_gep.py | |
| - name: Run demos (parallel) | |
| run: | | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_elasticity.py | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_periodic_geometrical.py | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_stokes.py | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_periodic3d_topological.py | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_elasticity_disconnect_2D.py | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_elasticity_disconnect.py | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_periodic_gep.py | |
| - name: Run contact demos 2D (serial) | |
| run: | | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_2D.py --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_2D.py --theta 1.05 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_2D.py --gmsh --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_2D.py --gmsh --theta 1.05 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_2D.py --quad --gmsh --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_2D.py --quad --gmsh --theta 1.05 --timing | |
| - name: Run contact demos 2D (parallel) | |
| run: | | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_2D.py --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_2D.py --theta 1.05 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_2D.py --gmsh --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_2D.py --gmsh --theta 1.05 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_2D.py --quad --gmsh --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_2D.py --quad --gmsh --theta 1.05 --timing | |
| - name: Run contact demos 3D (serial) | |
| run: | | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --theta 1.05 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --gmsh --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --gmsh --theta 1.05 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --gmsh --no-slip --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --gmsh --no-slip --theta 1.05 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --gmsh --no-slip --hex --theta 0 --timing | |
| coverage run --rcfile=.coveragerc python/demos/demo_contact_3D.py --gmsh --no-slip --hex --theta 1.05 --timing | |
| - name: Run contact demos 3D (parallel) | |
| run: | | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --theta 1.05 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --gmsh --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --gmsh --theta 1.05 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --gmsh --no-slip --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --gmsh --no-slip --theta 1.05 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --gmsh --no-slip --hex --theta 0 --timing | |
| mpirun -n 2 coverage run --rcfile=.coveragerc -m mpi4py python/demos/demo_contact_3D.py --gmsh --no-slip --hex --theta 1.05 --timing | |
| - name: Combine coverage reports | |
| run: | | |
| coverage combine | |
| coverage report -m | |
| coverage html | |
| - name: Upload coverage report as artifact | |
| if: matrix.build_mode == 'release' && matrix.petsc_arch == 'real' && matrix.CC == 'cc' && matrix.CXX == 'c++' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: code-coverage-report | |
| path: htmlcov | |
| if-no-files-found: error |