From 3e1e71a493313bd96b7c6092ccce9c7ddbffb565 Mon Sep 17 00:00:00 2001 From: MatiasJJ <39948154+MatiasJJ@users.noreply.github.com> Date: Thu, 27 Apr 2023 14:30:21 +0300 Subject: [PATCH 1/2] Added filenames in the instructions Of course they don't match if someone changes their file names. --- vib/README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/vib/README.md b/vib/README.md index 84c9d74..fe76e61 100644 --- a/vib/README.md +++ b/vib/README.md @@ -12,6 +12,8 @@ frequently used to verify that a TS was really found. wave function restart there and edit the input files (replace `TODO`): * Fix coordinate and wavefunction restart filenames * The initial density guess (`SCF_GUESS`) is made based on `RESTART` + * The wave-function file from earlier calculation (`WFN_NAME`) should be `enol-neb-BAND5-RESTART.wfn` + * Coordinates-file from earlier calculation (`XYZ_NAME`) should be `enol-neb-pos-Replica_nr_5-1.xyz` * `RUN_TYPE` should be `VIBRATIONAL_ANALYSIS` ```bash From 859ae4d238f4649506969681611c2ed34912b36e Mon Sep 17 00:00:00 2001 From: MatiasJJ <39948154+MatiasJJ@users.noreply.github.com> Date: Thu, 27 Apr 2023 14:42:11 +0300 Subject: [PATCH 2/2] added extra golden visualisation --- vib/README.md | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/vib/README.md b/vib/README.md index fe76e61..fa13bae 100644 --- a/vib/README.md +++ b/vib/README.md @@ -34,4 +34,11 @@ frequently used to verify that a TS was really found. are there in total? Why? * Hint: Think about degrees of freedom +Extra: Visualise the vibrations with Molden: + + ```bash + $ module load molden + $ molden enol-vib-VIBRATIONS-1.mol + ``` + **Continue the hands-on with [Part 3](../hybrid/README.md).**