diff --git a/.github/workflows/snakemake-run.yaml b/.github/workflows/snakemake-run.yaml index 1701c90a..47537fd5 100644 --- a/.github/workflows/snakemake-run.yaml +++ b/.github/workflows/snakemake-run.yaml @@ -48,7 +48,11 @@ jobs: - name: Set up Miniconda uses: conda-incubator/setup-miniconda@v2.2.0 - + with: + auto-update-conda: true + channels: bioconda,conda-forge,defaults + channel-priority: strict + - name: Install system dependencies (Linux) if: runner.os == 'Linux' run: | @@ -71,7 +75,7 @@ jobs: - name: Install Snakemake (macOS) if: runner.os == 'macOS' run: | - conda install -c bioconda snakemake + conda install snakemake - name: Run Snakemake (macOS) if: runner.os == 'macOS'