From cc8b597fd4464b943d4f02b1a2ad335e7e2f8797 Mon Sep 17 00:00:00 2001 From: Charlotte Soneson Date: Fri, 27 Sep 2024 17:25:14 +0200 Subject: [PATCH] Update conda installation step in GHA --- .github/workflows/snakemake-run.yaml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/snakemake-run.yaml b/.github/workflows/snakemake-run.yaml index 5ff3c5a1..94355a97 100644 --- a/.github/workflows/snakemake-run.yaml +++ b/.github/workflows/snakemake-run.yaml @@ -49,12 +49,14 @@ jobs: cat .Renviron Rscript -e "install.packages('BiocManager'); BiocManager::install('GenomeInfoDbData')" - - name: Set up Miniconda + - name: Set up conda uses: conda-incubator/setup-miniconda@v3 with: auto-update-conda: true - channels: bioconda,conda-forge,defaults + channels: bioconda,conda-forge,nodefaults + channel-priority: strict auto-activate-base: true + miniforge-version: latest - name: Install system dependencies (Linux) if: runner.os == 'Linux'