From 0c130269ea3019db666b50364546621a648d5be2 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 15:29:27 +0200 Subject: [PATCH 01/37] Update environment.yml and setup.cfg to latest version of sphinx --- environment.yml | 5 ++--- setup.cfg | 5 ++--- 2 files changed, 4 insertions(+), 6 deletions(-) diff --git a/environment.yml b/environment.yml index e2d90f14896..a45df14902b 100644 --- a/environment.yml +++ b/environment.yml @@ -9,7 +9,7 @@ dependencies: - astropy=5 - black - bokeh=2 - - nbsphinx >=0.8.12,<0.9 + - nbsphinx - cython - graphviz - h5py @@ -34,7 +34,7 @@ dependencies: - scikit-learn - scipy - setuptools - - sphinx=3.5 + - sphinx - sphinx-automodapi - sphinx_rtd_theme - tomli @@ -47,5 +47,4 @@ dependencies: - zlib - zstandard - eventio>=1.9.1 - - jinja2=3.0 # for sphinx 3.5, remove when updating to 4.x - ffmpeg # for making movies in the documentation diff --git a/setup.cfg b/setup.cfg index 8085914b2d9..303997ce672 100644 --- a/setup.cfg +++ b/setup.cfg @@ -56,11 +56,10 @@ tests = docs = - sphinx ~=3.5 - jinja2 ~=3.0.2 # for sphinx 3.5, remove when upgrading sphinx + sphinx sphinx_rtd_theme sphinx_automodapi - nbsphinx ~=0.8.12 + nbsphinx numpydoc jupyter notebook From 501f2a9218982ee2f922337f9cc3873047cb9e16 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 15:31:02 +0200 Subject: [PATCH 02/37] Moved docs/_static/theme_overrides.css to docs/_static/ctapipe.css --- docs/_static/ctapipe.css | 47 ++++++++++++++++++++++++++++++++ docs/_static/theme_overrides.css | 13 --------- 2 files changed, 47 insertions(+), 13 deletions(-) create mode 100644 docs/_static/ctapipe.css delete mode 100644 docs/_static/theme_overrides.css diff --git a/docs/_static/ctapipe.css b/docs/_static/ctapipe.css new file mode 100644 index 00000000000..243e4af60cd --- /dev/null +++ b/docs/_static/ctapipe.css @@ -0,0 +1,47 @@ +/* override table width restrictions */ +@media screen and (min-width: 767px) { + + .wy-table-responsive table td { + /* !important prevents the common CSS stylesheets from overriding + this as on RTD they are loaded after this stylesheet */ + white-space: normal !important; + } + + .wy-table-responsive { + overflow: visible !important; + } +} + +/* sphinx-design */ +.sd-card { + border-radius: 5px; + padding: 30px 10px 20px 10px; + margin: 10px 0px; +} + +.sd-card .sd-card-header .sd-card-text { + margin: 0px; +} + +.sd-card .sd-card-header { + border: none; + text-align: center; + font-size: var(--pst-font-size-h4); + font-weight: bold; + padding: 0.5rem 0rem 0.5rem 0rem; +} + +.sd-card .sd-card-footer { + border: none; +} + +.sd-card .sd-card-footer .sd-card-text { + max-width: 220px; + margin-left: auto; + margin-right: auto; +} + +html[data-theme="dark"] .sd-shadow-sm { + --sd-color-shadow: #6e6e6e; +} + diff --git a/docs/_static/theme_overrides.css b/docs/_static/theme_overrides.css deleted file mode 100644 index 63ee6cc74ce..00000000000 --- a/docs/_static/theme_overrides.css +++ /dev/null @@ -1,13 +0,0 @@ -/* override table width restrictions */ -@media screen and (min-width: 767px) { - - .wy-table-responsive table td { - /* !important prevents the common CSS stylesheets from overriding - this as on RTD they are loaded after this stylesheet */ - white-space: normal !important; - } - - .wy-table-responsive { - overflow: visible !important; - } -} From 135df800ae5a7701d2002b3ab5101b3c86759125 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 15:33:22 +0200 Subject: [PATCH 03/37] Added logos dark/light --- docs/ctapipe_logo.webp | Bin 0 -> 108648 bytes docs/ctapipe_logo_dark.webp | Bin 0 -> 99660 bytes 2 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 docs/ctapipe_logo.webp create mode 100644 docs/ctapipe_logo_dark.webp diff --git a/docs/ctapipe_logo.webp b/docs/ctapipe_logo.webp new file mode 100644 index 0000000000000000000000000000000000000000..bde5a0c7d4f69dc9ae46a2ba887e4b03f569b524 GIT binary patch literal 108648 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"name": "stderr", + "output_type": "stream", + "text": [ + "Outfile was changed to '{'name': 'outfile', 'old': None, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.foo'), 'owner': <__main__.AdvancedComponent object at 0x7fa105f4fe20>, 'type': 'change'}'\n" + ] + }, + { + "data": { + "text/html": [ + "
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An advanced technique

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infile/home/aknierim/dev/ctapipe/docs/examples/test.fooinput file name (default: traitlets.Undefined)
outfile/home/aknierim/dev/ctapipe/docs/examples/out.foooutput file name (default: traitlets.Undefined)
value1-1Value to use (default: -1)
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" + ], + "text/plain": [ + "<__main__.AdvancedComponent at 0x7fa105f4fe20>" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "AdvancedComponent(infile=\"test.foo\", outfile=\"out.foo\")" ] @@ -138,9 +215,26 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Subarray : MonteCarloArray\n", + "Num Tels : 180\n", + "Footprint: 4.92 km2\n", + "\n", + " Type Count Tel IDs \n", + "----------------- ----- ---------------\n", + " SST_ASTRI_CHEC 120 30-99,131-180 \n", + " LST_LST_LSTCam 4 1-4 \n", + "MST_MST_NectarCam 28 100-124,128-130\n", + " MST_MST_FlashCam 28 5-29,125-127 \n" + ] + } + ], "source": [ "from ctapipe.instrument import SubarrayDescription, TelescopeDescription\n", "\n", @@ -150,9 +244,41 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 7, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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a component that contains parameters that are per-telescope configurable

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param[('type', '*', 5.0)]Something configurable with telescope patterns. (default: traitlets.Undefined)
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" + ], + "text/plain": [ + "<__main__.TelescopeWiseComponent at 0x7fa1704b9280>" + ] + }, + "execution_count": 7, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "TelescopeWiseComponent(subarray=subarray)" ] @@ -186,7 +312,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 8, "metadata": {}, "outputs": [], "source": [ @@ -244,9 +370,128 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 9, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "MyTool\n", + "

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do some things and stuff

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config_files[] (default: traitlets.Undefined)
iterations5Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format[%(name)s]%(highlevel)s %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level30Set the log level by value or name. (default: 30)
logging_config{}\n", + " Configure additional log handlers.\n", + "\n", + " The default stderr logs handler is configured by the\n", + " log_level, log_datefmt and log_format settings.\n", + "\n", + " This configuration can be used to configure additional handlers\n", + " (e.g. to output the log to a file) or for finer control over the\n", + " default handlers.\n", + "\n", + " If provided this should be a logging configuration dictionary, for\n", + " more information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", + "\n", + " This dictionary is merged with the base logging configuration which\n", + " defines the following:\n", + "\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + "\n", + " This example adds a new handler that writes to a file:\n", + "\n", + " .. code-block:: python\n", + "\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + "\n", + " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", + "

Components:\n", + "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", + "

\n", + "" + ], + "text/plain": [ + "<__main__.MyTool at 0x7fa170490cd0>" + ] + }, + "execution_count": 9, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool = MyTool()\n", "tool" @@ -254,9 +499,78 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 10, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "do some things and stuff\n", + "\n", + "Options\n", + "=======\n", + "The options below are convenience aliases to configurable class-options,\n", + "as listed in the \"Equivalent to\" description-line of the aliases.\n", + "To see all configurable class-options for some , use:\n", + " --help-all\n", + "\n", + "-q, --quiet\n", + " Disable console logging.\n", + " Equivalent to: [--Tool.quiet=True]\n", + "-v, --verbose\n", + " Set log level to DEBUG\n", + " Equivalent to: [--Tool.log_level=DEBUG]\n", + "--overwrite\n", + " Overwrite existing output files without asking\n", + " Equivalent to: [--Tool.overwrite=True]\n", + "--debug\n", + " Set log-level to debug, for the most verbose logging.\n", + " Equivalent to: [--Application.log_level=10]\n", + "--show-config\n", + " Show the application's configuration (human-readable format)\n", + " Equivalent to: [--Application.show_config=True]\n", + "--show-config-json\n", + " Show the application's configuration (json format)\n", + " Equivalent to: [--Application.show_config_json=True]\n", + "-c, --config=...\n", + " Default: []\n", + " Equivalent to: [--Tool.config_files]\n", + "--log-level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + " Equivalent to: [--Tool.log_level]\n", + "-l, --log-file=\n", + " Filename for the log\n", + " Default: None\n", + " Equivalent to: [--Tool.log_file]\n", + "--log-file-level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + " Equivalent to: [--Tool.log_file_level]\n", + "--provenance-log=\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--Tool.provenance_log]\n", + "--infile=\n", + " input file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.infile]\n", + "--outfile=\n", + " output file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.outfile]\n", + "--iterations=\n", + " Number of times to run\n", + " Default: 5\n", + " Equivalent to: [--MyTool.iterations]\n", + "\n", + "To see all available configurables, use `--help-all`.\n", + "\n" + ] + } + ], "source": [ "tool.print_help()" ] @@ -270,9 +584,322 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "do some things and stuff\n", + "\n", + "Options\n", + "=======\n", + "The options below are convenience aliases to configurable class-options,\n", + "as listed in the \"Equivalent to\" description-line of the aliases.\n", + "To see all configurable class-options for some , use:\n", + " --help-all\n", + "\n", + "-q, --quiet\n", + " Disable console logging.\n", + " Equivalent to: [--Tool.quiet=True]\n", + "-v, --verbose\n", + " Set log level to DEBUG\n", + " Equivalent to: [--Tool.log_level=DEBUG]\n", + "--overwrite\n", + " Overwrite existing output files without asking\n", + " Equivalent to: [--Tool.overwrite=True]\n", + "--debug\n", + " Set log-level to debug, for the most verbose logging.\n", + " Equivalent to: [--Application.log_level=10]\n", + "--show-config\n", + " Show the application's configuration (human-readable format)\n", + " Equivalent to: [--Application.show_config=True]\n", + "--show-config-json\n", + " Show the application's configuration (json format)\n", + " Equivalent to: [--Application.show_config_json=True]\n", + "-c, --config=...\n", + " Default: []\n", + " Equivalent to: [--Tool.config_files]\n", + "--log-level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + " Equivalent to: [--Tool.log_level]\n", + "-l, --log-file=\n", + " Filename for the log\n", + " Default: None\n", + " Equivalent to: [--Tool.log_file]\n", + "--log-file-level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + " Equivalent to: [--Tool.log_file_level]\n", + "--provenance-log=\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--Tool.provenance_log]\n", + "--infile=\n", + " input file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.infile]\n", + "--outfile=\n", + " output file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.outfile]\n", + "--iterations=\n", + " Number of times to run\n", + " Default: 5\n", + " Equivalent to: [--MyTool.iterations]\n", + "\n", + "Class options\n", + "=============\n", + "The command-line option below sets the respective configurable class-parameter:\n", + " --Class.parameter=value\n", + "This line is evaluated in Python, so simple expressions are allowed.\n", + "For instance, to set `C.a=[0,1,2]`, you may type this:\n", + " --C.a='range(3)'\n", + "\n", + "Application(SingletonConfigurable) options\n", + "------------------------------------------\n", + "--Application.log_datefmt=\n", + " The date format used by logging formatters for %(asctime)s\n", + " Default: '%Y-%m-%d %H:%M:%S'\n", + "--Application.log_format=\n", + " The Logging format template\n", + " Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "--Application.log_level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + "--Application.logging_config==...\n", + " Configure additional log handlers.\n", + " The default stderr logs handler is configured by the log_level, log_datefmt\n", + " and log_format settings.\n", + " This configuration can be used to configure additional handlers (e.g. to\n", + " output the log to a file) or for finer control over the default handlers.\n", + " If provided this should be a logging configuration dictionary, for more\n", + " information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-\n", + " dictschema\n", + " This dictionary is merged with the base logging configuration which defines\n", + " the following:\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + " This example adds a new handler that writes to a file:\n", + " .. code-block:: python\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + " Default: {}\n", + "--Application.show_config=\n", + " Instead of starting the Application, dump configuration to stdout\n", + " Default: False\n", + "--Application.show_config_json=\n", + " Instead of starting the Application, dump configuration to stdout (as JSON)\n", + " Default: False\n", + "\n", + "Tool(Application) options\n", + "-------------------------\n", + "--Tool.config_files=...\n", + " Default: []\n", + "--Tool.log_config==...\n", + " Default: {}\n", + "--Tool.log_datefmt=\n", + " The date format used by logging formatters for %(asctime)s\n", + " Default: '%Y-%m-%d %H:%M:%S'\n", + "--Tool.log_file=\n", + " Filename for the log\n", + " Default: None\n", + "--Tool.log_file_level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + "--Tool.log_format=\n", + " The Logging format template\n", + " Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "--Tool.log_level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + "--Tool.logging_config==...\n", + " Configure additional log handlers.\n", + " The default stderr logs handler is configured by the log_level, log_datefmt\n", + " and log_format settings.\n", + " This configuration can be used to configure additional handlers (e.g. to\n", + " output the log to a file) or for finer control over the default handlers.\n", + " If provided this should be a logging configuration dictionary, for more\n", + " information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-\n", + " dictschema\n", + " This dictionary is merged with the base logging configuration which defines\n", + " the following:\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + " This example adds a new handler that writes to a file:\n", + " .. code-block:: python\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + " Default: {}\n", + "--Tool.overwrite=\n", + " Default: False\n", + "--Tool.provenance_log=\n", + " Default: traitlets.Undefined\n", + "--Tool.quiet=\n", + " Default: False\n", + "--Tool.show_config=\n", + " Instead of starting the Application, dump configuration to stdout\n", + " Default: False\n", + "--Tool.show_config_json=\n", + " Instead of starting the Application, dump configuration to stdout (as JSON)\n", + " Default: False\n", + "\n", + "MyTool(Tool) options\n", + "--------------------\n", + "--MyTool.config_files=...\n", + " Default: []\n", + "--MyTool.iterations=\n", + " Number of times to run\n", + " Default: 5\n", + "--MyTool.log_config==...\n", + " Default: {}\n", + "--MyTool.log_datefmt=\n", + " The date format used by logging formatters for %(asctime)s\n", + " Default: '%Y-%m-%d %H:%M:%S'\n", + "--MyTool.log_file=\n", + " Filename for the log\n", + " Default: None\n", + "--MyTool.log_file_level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + "--MyTool.log_format=\n", + " The Logging format template\n", + " Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "--MyTool.log_level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + "--MyTool.logging_config==...\n", + " Configure additional log handlers.\n", + " The default stderr logs handler is configured by the log_level, log_datefmt\n", + " and log_format settings.\n", + " This configuration can be used to configure additional handlers (e.g. to\n", + " output the log to a file) or for finer control over the default handlers.\n", + " If provided this should be a logging configuration dictionary, for more\n", + " information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-\n", + " dictschema\n", + " This dictionary is merged with the base logging configuration which defines\n", + " the following:\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + " This example adds a new handler that writes to a file:\n", + " .. code-block:: python\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + " Default: {}\n", + "--MyTool.overwrite=\n", + " Default: False\n", + "--MyTool.provenance_log=\n", + " Default: traitlets.Undefined\n", + "--MyTool.quiet=\n", + " Default: False\n", + "--MyTool.show_config=\n", + " Instead of starting the Application, dump configuration to stdout\n", + " Default: False\n", + "--MyTool.show_config_json=\n", + " Instead of starting the Application, dump configuration to stdout (as JSON)\n", + " Default: False\n", + "\n", + "MyComponent(Component) options\n", + "------------------------------\n", + "--MyComponent.value=\n", + " Value to use\n", + " Default: -1\n", + "\n", + "AdvancedComponent(Component) options\n", + "------------------------------------\n", + "--AdvancedComponent.infile=\n", + " input file name\n", + " Default: traitlets.Undefined\n", + "--AdvancedComponent.outfile=\n", + " output file name\n", + " Default: traitlets.Undefined\n", + "--AdvancedComponent.value1=\n", + " Value to use\n", + " Default: -1\n", + "\n", + "SecondaryMyComponent(MyComponent) options\n", + "-----------------------------------------\n", + "--SecondaryMyComponent.value=\n", + " Value to use\n", + " Default: -1\n", + "\n", + "TelescopeWiseComponent(TelescopeComponent) options\n", + "--------------------------------------------------\n", + "--TelescopeWiseComponent.param=...\n", + " Something configurable with telescope patterns.\n", + " Default: [('type', '*', 5.0)]\n", + "\n" + ] + } + ], "source": [ "tool.print_help(classes=True)" ] @@ -295,9 +922,18 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 12, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:52,057 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170483f40>, 'type': 'change'}'\n", + "2023-07-03 17:24:52,559 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n" + ] + } + ], "source": [ "try:\n", " tool.run(argv=[\"--infile\", str(GAMMA_FILE), \"--outfile\", \"out.csv\"])\n", @@ -307,9 +943,27 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 13, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:52,798 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): Loading config from '[]'\n", + "2023-07-03 17:24:52,800 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", + "2023-07-03 17:24:52,802 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170483520>, 'type': 'change'}'\n", + "2023-07-03 17:24:52,803 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 3 iterations...\n", + "2023-07-03 17:24:52,803 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", + "2023-07-03 17:24:52,903 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", + "2023-07-03 17:24:53,005 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", + "2023-07-03 17:24:53,106 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", + "2023-07-03 17:24:53,108 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", + "2023-07-03 17:24:53,114 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,116 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n" + ] + } + ], "source": [ "tool.log_format = \"%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s\"\n", "\n", @@ -340,9 +994,2637 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 14, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:53,149 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Starting: mytool\n", + "2023-07-03 17:24:53,325 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): Loading config from '[]'\n", + "2023-07-03 17:24:53,327 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", + "2023-07-03 17:24:53,329 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486340>, 'type': 'change'}'\n", + "2023-07-03 17:24:53,330 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [], 'iterations': 3, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s', 'log_level': 10, 'logging_config': {}, 'overwrite': False, 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'), 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'value1': -1, 'MyComponent': {'value': -1}}}}\n", + "2023-07-03 17:24:53,330 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 3 iterations...\n", + "2023-07-03 17:24:53,330 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", + "2023-07-03 17:24:53,331 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,331 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,432 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", + "2023-07-03 17:24:53,433 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,435 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,537 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", + "2023-07-03 17:24:53,538 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,539 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,640 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", + "2023-07-03 17:24:53,642 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", + "2023-07-03 17:24:53,649 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,651 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,653 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,668 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.write_provenance): PROVENANCE: '[\n", + " {\n", + " \"activity_name\": \"mytool\",\n", + " \"activity_uuid\": \"c2c31b3c-b5cd-4c46-8581-e0cf17c94af0\",\n", + " \"start\": {\n", + " \"time_utc\": \"2023-07-03T15:24:51.880\"\n", + " },\n", + " \"stop\": {\n", + " \"time_utc\": \"2023-07-03T15:24:52.561\"\n", + " },\n", + " \"system\": {\n", + " \"ctapipe_version\": \"0.19.1.dev27+g062fd966.d20230703\",\n", + " \"ctapipe_resources_version\": \"not installed\",\n", + " \"eventio_version\": \"1.11.0\",\n", + " \"ctapipe_svc_path\": null,\n", + " \"executable\": \"/home/aknierim/.local/conda/envs/cta-dev/bin/python\",\n", + " \"platform\": {\n", + " \"architecture_bits\": \"64bit\",\n", + " \"architecture_linkage\": \"ELF\",\n", + " \"machine\": \"x86_64\",\n", + " \"processor\": \"x86_64\",\n", + " \"node\": \"e5b-dell-09\",\n", + " \"version\": \"#47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jun 21 15:35:31 UTC 2\",\n", + " \"system\": \"Linux\",\n", + " \"release\": \"5.19.0-46-generic\",\n", + " \"libcver\": [\n", + " \"glibc\",\n", + " \"2.35\"\n", + " ],\n", + " \"n_cpus\": 12,\n", + " \"boot_time\": \"2023-07-03T07:18:46.000\"\n", + " },\n", + " \"python\": {\n", + " \"version_string\": \"3.9.16 | packaged by conda-forge | (main, Feb 1 2023, 21:39:03) \\n[GCC 11.3.0]\",\n", + " \"version\": [\n", + " \"3\",\n", + " \"9\",\n", + " \"16\"\n", + " ],\n", + " \"compiler\": \"GCC 11.3.0\",\n", + " \"implementation\": \"CPython\",\n", + " \"packages\": [\n", + " {\n", + " \"name\": \"Babel\",\n", + " \"version\": \"2.12.1\"\n", + " },\n", + " {\n", + " \"name\": \"Cython\",\n", + " \"version\": \"0.29.34\"\n", + " },\n", + " {\n", + " \"name\": \"Jinja2\",\n", + " \"version\": \"3.1.2\"\n", + " },\n", + " {\n", + " \"name\": \"MarkupSafe\",\n", + " \"version\": \"2.1.2\"\n", + " },\n", + " {\n", + " \"name\": \"Pillow\",\n", + " \"version\": \"9.5.0\"\n", + " },\n", + " {\n", + " \"name\": \"PyQt5\",\n", + " \"version\": \"5.15.7\"\n", + " },\n", + " {\n", + " \"name\": \"PyQt5-sip\",\n", + " \"version\": \"12.11.0\"\n", + " },\n", + " {\n", + " \"name\": \"PySocks\",\n", + " \"version\": \"1.7.1\"\n", + " },\n", + " {\n", + " \"name\": \"PyYAML\",\n", + " \"version\": \"6.0\"\n", + " },\n", + " {\n", + " \"name\": \"Pygments\",\n", + " \"version\": \"2.15.1\"\n", + " },\n", + " {\n", + " \"name\": \"QtPy\",\n", + " \"version\": \"2.3.1\"\n", + " },\n", + " {\n", + " \"name\": \"Send2Trash\",\n", + " \"version\": \"1.8.2\"\n", + " },\n", + " {\n", + " \"name\": \"Sphinx\",\n", + " \"version\": \"6.2.1\"\n", + " },\n", + " {\n", + " \"name\": \"accessible-pygments\",\n", + " \"version\": \"0.0.4\"\n", + " },\n", + " {\n", + " \"name\": \"alabaster\",\n", + " \"version\": \"0.7.13\"\n", + " },\n", + " {\n", + " \"name\": \"anyio\",\n", + " \"version\": \"3.6.2\"\n", + " },\n", + " {\n", + " \"name\": \"argon2-cffi\",\n", + " \"version\": \"21.3.0\"\n", + " },\n", + " {\n", + " \"name\": \"argon2-cffi-bindings\",\n", + " \"version\": \"21.2.0\"\n", + " },\n", + " {\n", + " \"name\": \"astropy\",\n", + " \"version\": \"5.2.2\"\n", + " },\n", + " {\n", + " \"name\": \"asttokens\",\n", + " \"version\": \"2.2.1\"\n", + " },\n", + " {\n", + " \"name\": \"async-lru\",\n", + " \"version\": \"2.0.2\"\n", + " },\n", + " {\n", + " \"name\": \"attrs\",\n", + " \"version\": \"23.1.0\"\n", + " },\n", + " {\n", + " \"name\": \"backcall\",\n", + " \"version\": \"0.2.0\"\n", + " },\n", + " {\n", + " \"name\": \"backports.functools-lru-cache\",\n", + " \"version\": \"1.6.4\"\n", + " },\n", + " {\n", + " \"name\": \"beautifulsoup4\",\n", + " \"version\": \"4.12.2\"\n", + " },\n", + " {\n", + " \"name\": \"black\",\n", + " \"version\": \"23.3.0\"\n", + " },\n", + " {\n", + " \"name\": \"bleach\",\n", + " \"version\": \"6.0.0\"\n", + " },\n", + " {\n", + " \"name\": \"bokeh\",\n", + " \"version\": \"2.4.3\"\n", + " },\n", + " {\n", + " \"name\": \"brotlipy\",\n", + " \"version\": \"0.7.0\"\n", + " },\n", + " {\n", + " \"name\": \"cached-property\",\n", + " \"version\": \"1.5.2\"\n", + " },\n", + " {\n", + " \"name\": 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\"/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/home/aknierim/.local/conda/envs/cta-dev/bin:/home/aknierim/.local/conda/condabin:/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin\",\n", + " \"LD_LIBRARY_PATH\": null,\n", + " \"DYLD_LIBRARY_PATH\": null,\n", + " \"USER\": \"aknierim\",\n", + " \"HOME\": \"/home/aknierim\",\n", + " \"SHELL\": \"/bin/zsh\"\n", + " },\n", + " \"arguments\": [\n", + " \"/home/aknierim/.local/conda/envs/cta-dev/lib/python3.9/site-packages/ipykernel_launcher.py\",\n", + " \"-f\",\n", + " \"/home/aknierim/.local/share/jupyter/runtime/kernel-8df72055-1d05-4a90-8466-961002b0e8ef.json\"\n", + " ],\n", + " \"start_time_utc\": \"2023-07-03T15:24:53.322\"\n", + " },\n", + " \"input\": [],\n", + " \"output\": [],\n", + " \"config\": {\n", + " \"MyTool\": {\n", + " \"config_files\": [],\n", + " \"iterations\": 3,\n", + " \"log_config\": {},\n", + " \"log_datefmt\": \"%Y-%m-%d %H:%M:%S\",\n", + " \"log_file\": null,\n", + " \"log_file_level\": \"INFO\",\n", + " \"log_format\": \"%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s\",\n", + " \"log_level\": 10,\n", + " \"logging_config\": {},\n", + " \"overwrite\": false,\n", + " \"provenance_log\": \"/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log\",\n", + " \"quiet\": false,\n", + " \"show_config\": false,\n", + " \"show_config_json\": false,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"SecondaryMyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"TelescopeWiseComponent\": {\n", + " \"param\": [\n", + " [\n", + " \"type\",\n", + " \"*\",\n", + " 5.0\n", + " ]\n", + " ]\n", + " },\n", + " \"AdvancedComponent\": {\n", + " \"infile\": \"/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst\",\n", + " \"outfile\": \"/home/aknierim/dev/ctapipe/docs/examples/out.csv\",\n", + " \"value1\": -1,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " }\n", + " }\n", + " }\n", + " },\n", + " \"status\": \"completed\",\n", + " \"duration_min\": 0.00818333333336696\n", + " }\n", + "]'\n", + "2023-07-03 17:24:53,683 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (application.exit): Exiting application: mytool\n" + ] + } + ], "source": [ "try:\n", " tool.run(\n", @@ -368,9 +3650,19 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 15, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:53,720 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Starting: mytool\n", + "2023-07-03 17:24:53,931 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486880>, 'type': 'change'}'\n", + "2023-07-03 17:24:54,032 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n" + ] + } + ], "source": [ "tool.iterations = 1\n", "tool.log_level = 0\n", @@ -390,9 +3682,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 16, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "bad value: The 'iterations' trait of a MyTool instance expected an int, not the str 'badval'.\n" + ] + } + ], "source": [ "try:\n", " tool.iterations = \"badval\"\n", @@ -411,9 +3711,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 17, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:54,141 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/Another.txt'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486880>, 'type': 'change'}'\n" + ] + } + ], "source": [ "tool.advanced.outfile = \"Another.txt\"" ] @@ -434,7 +3742,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 18, "metadata": {}, "outputs": [], "source": [ @@ -443,9 +3751,4382 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 19, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:54,332 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", + "2023-07-03 17:24:54,334 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/foo.txt'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486e20>, 'type': 'change'}'\n", + "2023-07-03 17:24:54,335 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [PosixPath('/home/aknierim/dev/ctapipe/docs/examples/Tools.json')], 'iterations': 5, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '[%(name)s]%(highlevel)s %(message)s', 'log_level': 10, 'logging_config': {}, 'overwrite': False, 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/something.txt'), 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/foo.txt'), 'value1': -1, 'MyComponent': {'value': -1}}}}\n", + "2023-07-03 17:24:54,336 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 5 iterations...\n", + "2023-07-03 17:24:54,336 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", + "2023-07-03 17:24:54,336 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,337 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,437 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", + "2023-07-03 17:24:54,439 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,441 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,542 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", + "2023-07-03 17:24:54,543 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,543 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,644 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 3\n", + "2023-07-03 17:24:54,645 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,647 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,748 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 4\n", + "2023-07-03 17:24:54,749 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,749 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,850 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", + "2023-07-03 17:24:54,852 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", + "2023-07-03 17:24:54,858 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,859 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,861 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,862 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,864 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + 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+ " \"name\": \"wheel\",\n", + " \"version\": \"0.40.0\"\n", + " },\n", + " {\n", + " \"name\": \"widgetsnbextension\",\n", + " \"version\": \"4.0.7\"\n", + " },\n", + " {\n", + " \"name\": \"zipp\",\n", + " \"version\": \"3.15.0\"\n", + " },\n", + " {\n", + " \"name\": \"zstandard\",\n", + " \"version\": \"0.19.0\"\n", + " }\n", + " ]\n", + " },\n", + " \"environment\": {\n", + " \"CONDA_DEFAULT_ENV\": \"cta-dev\",\n", + " \"CONDA_PREFIX\": \"/home/aknierim/.local/conda/envs/cta-dev\",\n", + " \"CONDA_PYTHON_EXE\": \"/home/aknierim/.local/conda/bin/python\",\n", + " \"CONDA_EXE\": \"/home/aknierim/.local/conda/bin/conda\",\n", + " \"CONDA_PROMPT_MODIFIER\": \"(cta-dev) \",\n", + " \"CONDA_SHLVL\": \"1\",\n", + " \"PATH\": \"/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/home/aknierim/.local/conda/envs/cta-dev/bin:/home/aknierim/.local/conda/condabin:/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin\",\n", + " \"LD_LIBRARY_PATH\": null,\n", + " \"DYLD_LIBRARY_PATH\": null,\n", + " \"USER\": \"aknierim\",\n", + " \"HOME\": \"/home/aknierim\",\n", + " \"SHELL\": \"/bin/zsh\"\n", + " },\n", + " \"arguments\": [\n", + " \"/home/aknierim/.local/conda/envs/cta-dev/lib/python3.9/site-packages/ipykernel_launcher.py\",\n", + " \"-f\",\n", + " \"/home/aknierim/.local/share/jupyter/runtime/kernel-8df72055-1d05-4a90-8466-961002b0e8ef.json\"\n", + " ],\n", + " \"start_time_utc\": \"2023-07-03T15:24:54.328\"\n", + " },\n", + " \"input\": [\n", + " {\n", + " \"url\": \"/home/aknierim/dev/ctapipe/docs/examples/Tools.json\",\n", + " \"role\": \"Tool Configuration\"\n", + " }\n", + " ],\n", + " \"output\": [],\n", + " \"config\": {\n", + " \"MyTool\": {\n", + " \"config_files\": [\n", + " \"/home/aknierim/dev/ctapipe/docs/examples/Tools.json\"\n", + " ],\n", + " \"iterations\": 5,\n", + " \"log_config\": {},\n", + " \"log_datefmt\": \"%Y-%m-%d %H:%M:%S\",\n", + " \"log_file\": null,\n", + " \"log_file_level\": \"INFO\",\n", + " \"log_format\": \"[%(name)s]%(highlevel)s %(message)s\",\n", + " \"log_level\": 10,\n", + " \"logging_config\": {},\n", + " \"overwrite\": false,\n", + " \"provenance_log\": \"/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log\",\n", + " \"quiet\": false,\n", + " \"show_config\": false,\n", + " \"show_config_json\": false,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"SecondaryMyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"TelescopeWiseComponent\": {\n", + " \"param\": [\n", + " [\n", + " \"type\",\n", + " \"*\",\n", + " 5.0\n", + " ]\n", + " ]\n", + " },\n", + " \"AdvancedComponent\": {\n", + " \"infile\": \"/home/aknierim/dev/ctapipe/docs/examples/something.txt\",\n", + " \"outfile\": \"/home/aknierim/dev/ctapipe/docs/examples/foo.txt\",\n", + " \"value1\": -1,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " }\n", + " }\n", + " }\n", + " },\n", + " \"status\": \"completed\",\n", + " \"duration_min\": 0.01166666666650329\n", + " }\n", + "]'\n", + "2023-07-03 17:24:54,902 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (application.exit): Exiting application: mytool\n" + ] + } + ], "source": [ "try:\n", " tool2.run(argv=[\"--config\", \"Tools.json\"])\n", @@ -455,34 +8136,61 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 20, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/home/aknierim/dev/ctapipe/docs/examples/something.txt\n" + ] + } + ], "source": [ "print(tool2.advanced.infile)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 21, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{'MyTool': {'config_files': ['Tools.json'], 'log_level': 'DEBUG'}, 'AdvancedComponent': {'infile': 'something.txt', 'outfile': 'foo.txt'}}\n" + ] + } + ], "source": [ "print(tool2.config)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 22, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "True" + ] + }, + "execution_count": 22, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool2.is_setup" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 23, "metadata": {}, "outputs": [], "source": [ @@ -491,16 +8199,27 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 24, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": 24, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool3.is_setup" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 25, "metadata": {}, "outputs": [], "source": [ @@ -509,27 +8228,283 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 26, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": 26, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool3.is_setup" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 27, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "MyTool\n", + "

\n", + "

do some things and stuff

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config_files[] (default: traitlets.Undefined)
iterations5Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format[%(name)s]%(highlevel)s %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level30Set the log level by value or name. (default: 30)
logging_config{}\n", + " Configure additional log handlers.\n", + "\n", + " The default stderr logs handler is configured by the\n", + " log_level, log_datefmt and log_format settings.\n", + "\n", + " This configuration can be used to configure additional handlers\n", + " (e.g. to output the log to a file) or for finer control over the\n", + " default handlers.\n", + "\n", + " If provided this should be a logging configuration dictionary, for\n", + " more information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", + "\n", + " This dictionary is merged with the base logging configuration which\n", + " defines the following:\n", + "\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + "\n", + " This example adds a new handler that writes to a file:\n", + "\n", + " .. code-block:: python\n", + "\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + "\n", + " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", + "

Components:\n", + "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", + "

\n", + "" + ], + "text/plain": [ + "<__main__.MyTool at 0x7fa1985c6610>" + ] + }, + "execution_count": 27, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool3" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 28, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:55,026 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa1704f4250>, 'type': 'change'}'\n" + ] + }, + { + "data": { + "text/html": [ + "MyTool\n", + "

\n", + "

do some things and stuff

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config_files[] (default: traitlets.Undefined)
iterations1Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level0Set the log level by value or name. (default: 30)
logging_config{}\n", + " Configure additional log handlers.\n", + "\n", + " The default stderr logs handler is configured by the\n", + " log_level, log_datefmt and log_format settings.\n", + "\n", + " This configuration can be used to configure additional handlers\n", + " (e.g. to output the log to a file) or for finer control over the\n", + " default handlers.\n", + "\n", + " If provided this should be a logging configuration dictionary, for\n", + " more information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", + "\n", + " This dictionary is merged with the base logging configuration which\n", + " defines the following:\n", + "\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + "\n", + " This example adds a new handler that writes to a file:\n", + "\n", + " .. code-block:: python\n", + "\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + "\n", + " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", + "

Components:\n", + "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", + "

\n", + "" + ], + "text/plain": [ + "<__main__.MyTool at 0x7fa170490cd0>" + ] + }, + "execution_count": 28, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.setup()\n", "tool" @@ -537,9 +8512,41 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 29, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
\n", + "SecondaryMyComponent\n", + "

\n", + "

A second component

\n", + "
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\n", + "\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + " \n", + "
value-1Value to use (default: -1)
\n", + "
" + ], + "text/plain": [ + "<__main__.SecondaryMyComponent at 0x7fa1704f4a00>" + ] + }, + "execution_count": 29, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.comp2" ] @@ -553,18 +8560,84 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 30, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "{'MyTool': {'config_files': [],\n", + " 'iterations': 1,\n", + " 'log_config': {},\n", + " 'log_datefmt': '%Y-%m-%d %H:%M:%S',\n", + " 'log_file': None,\n", + " 'log_file_level': 'INFO',\n", + " 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s',\n", + " 'log_level': 0,\n", + " 'logging_config': {},\n", + " 'overwrite': False,\n", + " 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'),\n", + " 'quiet': False,\n", + " 'show_config': False,\n", + " 'show_config_json': False,\n", + " 'MyComponent': {'value': -1},\n", + " 'SecondaryMyComponent': {'value': -1},\n", + " 'TelescopeWiseComponent': {'param': TelescopePatternList([('type',\n", + " '*',\n", + " 5.0)])},\n", + " 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'),\n", + " 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'),\n", + " 'value1': -1,\n", + " 'MyComponent': {'value': -1}}}}" + ] + }, + "execution_count": 30, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.get_current_config()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 31, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "{'MyTool': {'config_files': [],\n", + " 'iterations': 12,\n", + " 'log_config': {},\n", + " 'log_datefmt': '%Y-%m-%d %H:%M:%S',\n", + " 'log_file': None,\n", + " 'log_file_level': 'INFO',\n", + " 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s',\n", + " 'log_level': 0,\n", + " 'logging_config': {},\n", + " 'overwrite': False,\n", + " 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'),\n", + " 'quiet': False,\n", + " 'show_config': False,\n", + " 'show_config_json': False,\n", + " 'MyComponent': {'value': -1},\n", + " 'SecondaryMyComponent': {'value': -1},\n", + " 'TelescopeWiseComponent': {'param': TelescopePatternList([('type',\n", + " '*',\n", + " 5.0)])},\n", + " 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'),\n", + " 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'),\n", + " 'value1': -1,\n", + " 'MyComponent': {'value': -1}}}}" + ] + }, + "execution_count": 31, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.iterations = 12\n", "tool.get_current_config()" @@ -579,9 +8652,244 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 32, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "# Configuration file for mytool.\n", + "\n", + "c = get_config() #noqa\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# Application(SingletonConfigurable) configuration\n", + "#------------------------------------------------------------------------------\n", + "## This is an application.\n", + "\n", + "## The date format used by logging formatters for %(asctime)s\n", + "# Default: '%Y-%m-%d %H:%M:%S'\n", + "# c.Application.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", + "\n", + "## The Logging format template\n", + "# Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "# c.Application.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", + "\n", + "## Set the log level by value or name.\n", + "# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + "# Default: 30\n", + "# c.Application.log_level = 30\n", + "\n", + "## Configure additional log handlers.\n", + "# \n", + "# The default stderr logs handler is configured by the log_level, log_datefmt\n", + "# and log_format settings.\n", + "# \n", + "# This configuration can be used to configure additional handlers (e.g. to\n", + "# output the log to a file) or for finer control over the default handlers.\n", + "# \n", + "# If provided this should be a logging configuration dictionary, for more\n", + "# information see:\n", + "# https://docs.python.org/3/library/logging.config.html#logging-config-\n", + "# dictschema\n", + "# \n", + "# This dictionary is merged with the base logging configuration which defines\n", + "# the following:\n", + "# \n", + "# * A logging formatter intended for interactive use called\n", + "# ``console``.\n", + "# * A logging handler that writes to stderr called\n", + "# ``console`` which uses the formatter ``console``.\n", + "# * A logger with the name of this application set to ``DEBUG``\n", + "# level.\n", + "# \n", + "# This example adds a new handler that writes to a file:\n", + "# \n", + "# .. code-block:: python\n", + "# \n", + "# c.Application.logging_config = {\n", + "# 'handlers': {\n", + "# 'file': {\n", + "# 'class': 'logging.FileHandler',\n", + "# 'level': 'DEBUG',\n", + "# 'filename': '',\n", + "# }\n", + "# },\n", + "# 'loggers': {\n", + "# '': {\n", + "# 'level': 'DEBUG',\n", + "# # NOTE: if you don't list the default \"console\"\n", + "# # handler here then it will be disabled\n", + "# 'handlers': ['console', 'file'],\n", + "# },\n", + "# }\n", + "# }\n", + "# Default: {}\n", + "# c.Application.logging_config = {}\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout\n", + "# Default: False\n", + "# c.Application.show_config = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", + "# Default: False\n", + "# c.Application.show_config_json = False\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# Tool(Application) configuration\n", + "#------------------------------------------------------------------------------\n", + "## This is an application.\n", + "\n", + "# Default: []\n", + "# c.Tool.config_files = []\n", + "\n", + "# Default: {}\n", + "# c.Tool.log_config = {}\n", + "\n", + "## The date format used by logging formatters for %(asctime)s\n", + "# See also: Application.log_datefmt\n", + "# c.Tool.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", + "\n", + "## Filename for the log\n", + "# Default: None\n", + "# c.Tool.log_file = None\n", + "\n", + "## Logging Level for File Logging\n", + "# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + "# Default: 'INFO'\n", + "# c.Tool.log_file_level = 'INFO'\n", + "\n", + "## The Logging format template\n", + "# See also: Application.log_format\n", + "# c.Tool.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", + "\n", + "## Set the log level by value or name.\n", + "# See also: Application.log_level\n", + "# c.Tool.log_level = 30\n", + "\n", + "## \n", + "# See also: Application.logging_config\n", + "# c.Tool.logging_config = {}\n", + "\n", + "# Default: False\n", + "# c.Tool.overwrite = False\n", + "\n", + "# Default: traitlets.Undefined\n", + "# c.Tool.provenance_log = traitlets.Undefined\n", + "\n", + "# Default: False\n", + "# c.Tool.quiet = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout\n", + "# See also: Application.show_config\n", + "# c.Tool.show_config = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", + "# See also: Application.show_config_json\n", + "# c.Tool.show_config_json = False\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# MyTool(Tool) configuration\n", + "#------------------------------------------------------------------------------\n", + "# See also: Tool.config_files\n", + "# c.MyTool.config_files = []\n", + "\n", + "## Number of times to run\n", + "# Default: 5\n", + "# c.MyTool.iterations = 5\n", + "\n", + "# See also: Tool.log_config\n", + "# c.MyTool.log_config = {}\n", + "\n", + "## The date format used by logging formatters for %(asctime)s\n", + "# See also: Application.log_datefmt\n", + "# c.MyTool.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", + "\n", + "## Filename for the log\n", + "# See also: Tool.log_file\n", + "# c.MyTool.log_file = None\n", + "\n", + "## Logging Level for File Logging\n", + "# See also: Tool.log_file_level\n", + "# c.MyTool.log_file_level = 'INFO'\n", + "\n", + "## The Logging format template\n", + "# See also: Application.log_format\n", + "# c.MyTool.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", + "\n", + "## Set the log level by value or name.\n", + "# See also: Application.log_level\n", + "# c.MyTool.log_level = 30\n", + "\n", + "## \n", + "# See also: Application.logging_config\n", + "# c.MyTool.logging_config = {}\n", + "\n", + "# See also: Tool.overwrite\n", + "# c.MyTool.overwrite = False\n", + "\n", + "# See also: Tool.provenance_log\n", + "# c.MyTool.provenance_log = traitlets.Undefined\n", + "\n", + "# See also: Tool.quiet\n", + "# c.MyTool.quiet = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout\n", + "# See also: Application.show_config\n", + "# c.MyTool.show_config = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", + "# See also: Application.show_config_json\n", + "# c.MyTool.show_config_json = False\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# MyComponent(Component) configuration\n", + "#------------------------------------------------------------------------------\n", + "## A Component that does stuff\n", + "\n", + "## Value to use\n", + "# Default: -1\n", + "# c.MyComponent.value = -1\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# AdvancedComponent(Component) configuration\n", + "#------------------------------------------------------------------------------\n", + "## An advanced technique\n", + "\n", + "## input file name\n", + "# Default: traitlets.Undefined\n", + "# c.AdvancedComponent.infile = traitlets.Undefined\n", + "\n", + "## output file name\n", + "# Default: traitlets.Undefined\n", + "# c.AdvancedComponent.outfile = traitlets.Undefined\n", + "\n", + "## Value to use\n", + "# Default: -1\n", + "# c.AdvancedComponent.value1 = -1\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# SecondaryMyComponent(MyComponent) configuration\n", + "#------------------------------------------------------------------------------\n", + "## A second component\n", + "\n", + "## Value to use\n", + "# See also: MyComponent.value\n", + "# c.SecondaryMyComponent.value = -1\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# TelescopeWiseComponent(TelescopeComponent) configuration\n", + "#------------------------------------------------------------------------------\n", + "## a component that contains parameters that are per-telescope configurable\n", + "\n", + "## Something configurable with telescope patterns.\n", + "# Default: [('type', '*', 5.0)]\n", + "# c.TelescopeWiseComponent.param = [('type', '*', 5.0)]\n", + "\n" + ] + } + ], "source": [ "print(tool.generate_config_file())" ] @@ -595,14 +8903,22 @@ } ], "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, "language_info": { "codemirror_mode": { - "name": "ipython" + "name": "ipython", + "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", - "nbconvert_exporter": "python" + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.9.16" } }, "nbformat": 4, diff --git a/docs/getting_started/index.rst b/docs/getting_started/index.rst index 497847c8796..2fffa42a874 100644 --- a/docs/getting_started/index.rst +++ b/docs/getting_started/index.rst @@ -1,3 +1,4 @@ + .. _getting_started: ****************************** @@ -77,7 +78,6 @@ Change to the directory where you cloned ``ctapipe``, and type: .. code-block:: console - $ conda env create -n cta-dev -f environment.yml @@ -238,11 +238,11 @@ You can do this at any time and more than once. It just moves the changes from your local branch on your development machine to your fork on github. -++++++++++++++++++++++++ -4. make a *Pull Request* -++++++++++++++++++++++++ +++++++++++++++++++++++++++ +4. Create a *Pull Request* +++++++++++++++++++++++++++ -When you're happy, you make PR on on your github fork page by clicking +When you're happy, you create PR on on your github fork page by clicking "pull request". You can also do this via *GitHub Desktop* if you have that installed, by pushing the pull-request button in the upper-right-hand corner. @@ -279,7 +279,7 @@ When the PR is accepted, the reviewer will merge your branch into the *master* repo on cta-observatory's account. +++++++++++++++++++++++++++++ -6. delete your feature branch +6. Delete your feature branch +++++++++++++++++++++++++++++ since it is no longer needed (assuming it was accepted and merged in): diff --git a/docs/index.rst b/docs/index.rst index 04226dff2b9..f788f9ad5d1 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -1,5 +1,7 @@ .. include:: references.txt +:html_theme.sidebar_secondary.remove: true + .. _ctapipe: ============================================== @@ -8,11 +10,19 @@ Prototype CTA Pipeline Framework (``ctapipe``) .. currentmodule:: ctapipe -**version**: |version| +**Version**: |version| + +.. image:: ctapipe_logo.webp + :class: only-light + :align: center + :width: 90% + :alt: The ctapipe logo. -.. image:: ctapipe_logo.png +.. image:: ctapipe_logo_dark.webp + :class: only-dark :align: center :width: 90% + :alt: The ctapipe logo. What is ctapipe? ================ @@ -33,25 +43,150 @@ What is ctapipe? .. _ctapipe_docs: -General documentation -===================== +.. General documentation +.. ===================== .. toctree:: :maxdepth: 1 - :glob: + :hidden: - getting_started_users/index - getting_started/index + User Guide + Developer Guide + ctapipe_api/index development/index tutorials/index examples/index tools/index FAQ data_models/index - ctapipe_api/index bibliography changelog + + +.. grid:: 3 + + .. grid-item-card:: + + :octicon:`book;40px` + + User Guide + ^^^^^^^^^^ + + Learn how to get started as a user. This guide + will help you install ctapipe. + + +++ + + .. button-ref:: getting_started_users/index + :expand: + :color: primary + :click-parent: + + To the user guide + + + .. grid-item-card:: + + :octicon:`person-add;40px` + + Developer Guide + ^^^^^^^^^^^^^^^ + + Learn how to get started as a developer. + This guide will help you install ctapipe for development + and explains how to contribute. + + +++ + + .. button-ref:: getting_started/index + :expand: + :color: primary + :click-parent: + + To the developer guide + + + .. grid-item-card:: + + :octicon:`git-pull-request;40px` + + Development Guidelines + ^^^^^^^^^^^^^^^^^^^^^^ + + These guidelines explain the coding style and the workflow. The ctapipe + enhancement proposals (CEPs) can also be found here. + + +++ + + .. button-ref:: development/index + :expand: + :color: primary + :click-parent: + + To the development guidelines + + + .. grid-item-card:: + + :octicon:`code;40px` + + API Docs + ^^^^^^^^ + + The API docs contain detailed descriptions of + of the various modules and functions included + in ctapipe. + + +++ + + .. button-ref:: ctapipe_api/index + :expand: + :color: primary + :click-parent: + + To API docs + + + .. grid-item-card:: + + :octicon:`mortar-board;40px` + + Tutorials + ^^^^^^^^^ + + A collection of tutorials aimed at new users + and developers to familiarize with ctapipe. + + +++ + + .. button-ref:: tutorials/index + :expand: + :color: primary + :click-parent: + + To the tutorials + + + .. grid-item-card:: + + :octicon:`light-bulb;40px` + + Examples + ^^^^^^^^ + + Some lower-level examples of features included in the ctapipe API. + + +++ + + .. button-ref:: examples/index + :expand: + :color: primary + :click-parent: + + To the examples + + Module API Status (relative to next release) ============================================ @@ -65,3 +200,7 @@ Development Help * Development workflow examples from AstroPy: https://astropy.readthedocs.org/en/latest/development/workflow/development_workflow.html * GIT tutorial: https://www.atlassian.com/git/tutorials/syncing/git-pull * Code distribution and Packaging https://packaging.python.org/en/latest/ + + + + diff --git a/docs/versions.json b/docs/versions.json new file mode 100644 index 00000000000..325cfcaf9eb --- /dev/null +++ b/docs/versions.json @@ -0,0 +1,12 @@ +[ + { + "name": "latest", + "version": "latest", + "url": "https://ctapipe.readthedocs.io/en/latest/" + }, + { + "name": "stable", + "version": "stable", + "url": "https://ctapipe.readthedocs.io/en/stable/" + }, +] From c1eef15eae0d1fe0038ff2c9439f896b9a90282e Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 15:53:33 +0200 Subject: [PATCH 05/37] Update setup.cfg pydata dependency --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 303997ce672..c26a1969475 100644 --- a/setup.cfg +++ b/setup.cfg @@ -57,7 +57,7 @@ tests = docs = sphinx - sphinx_rtd_theme + pydata_sphinx_theme sphinx_automodapi nbsphinx numpydoc From a76a43d94d6ffa0c555e369f8ce14c9d9b148928 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 16:00:11 +0200 Subject: [PATCH 06/37] Added sphinx-design --- setup.cfg | 1 + 1 file changed, 1 insertion(+) diff --git a/setup.cfg b/setup.cfg index c26a1969475..67d11b36c1f 100644 --- a/setup.cfg +++ b/setup.cfg @@ -61,6 +61,7 @@ docs = sphinx_automodapi nbsphinx numpydoc + sphinx-design jupyter notebook graphviz From c60a81e0a56f769ffa1c9a3da9db3a5cbb2c9b76 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 16:51:56 +0200 Subject: [PATCH 07/37] Update environment.yml and setup.cfg to latest version of sphinx --- environment.yml | 5 ++--- setup.cfg | 7 +++---- 2 files changed, 5 insertions(+), 7 deletions(-) diff --git a/environment.yml b/environment.yml index e2d90f14896..a45df14902b 100644 --- a/environment.yml +++ b/environment.yml @@ -9,7 +9,7 @@ dependencies: - astropy=5 - black - bokeh=2 - - nbsphinx >=0.8.12,<0.9 + - nbsphinx - cython - graphviz - h5py @@ -34,7 +34,7 @@ dependencies: - scikit-learn - scipy - setuptools - - sphinx=3.5 + - sphinx - sphinx-automodapi - sphinx_rtd_theme - tomli @@ -47,5 +47,4 @@ dependencies: - zlib - zstandard - eventio>=1.9.1 - - jinja2=3.0 # for sphinx 3.5, remove when updating to 4.x - ffmpeg # for making movies in the documentation diff --git a/setup.cfg b/setup.cfg index 5092c8e6292..d3e867f8638 100644 --- a/setup.cfg +++ b/setup.cfg @@ -56,12 +56,11 @@ tests = docs = - sphinx ~=3.5 - jinja2 ~=3.0.2 # for sphinx 3.5, remove when upgrading sphinx + sphinx sphinx_rtd_theme sphinx_automodapi - nbsphinx ~=0.8.12 - numpydoc ~=1.4.0 + nbsphinx + numpydoc jupyter notebook graphviz From 658fb6a8617340150e5f18343761329e10098812 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 15:31:02 +0200 Subject: [PATCH 08/37] Moved docs/_static/theme_overrides.css to docs/_static/ctapipe.css --- docs/_static/ctapipe.css | 47 ++++++++++++++++++++++++++++++++ docs/_static/theme_overrides.css | 13 --------- 2 files changed, 47 insertions(+), 13 deletions(-) create mode 100644 docs/_static/ctapipe.css delete mode 100644 docs/_static/theme_overrides.css diff --git a/docs/_static/ctapipe.css b/docs/_static/ctapipe.css new file mode 100644 index 00000000000..243e4af60cd --- /dev/null +++ b/docs/_static/ctapipe.css @@ -0,0 +1,47 @@ +/* override table width restrictions */ +@media screen and (min-width: 767px) { + + .wy-table-responsive table td { + /* !important prevents the common CSS stylesheets from overriding + this as on RTD they are loaded after this stylesheet */ + white-space: normal !important; + } + + .wy-table-responsive { + overflow: visible !important; + } +} + +/* sphinx-design */ +.sd-card { + border-radius: 5px; + padding: 30px 10px 20px 10px; + margin: 10px 0px; +} + +.sd-card .sd-card-header .sd-card-text { + margin: 0px; +} + +.sd-card .sd-card-header { + border: none; + text-align: center; + font-size: var(--pst-font-size-h4); + font-weight: bold; + padding: 0.5rem 0rem 0.5rem 0rem; +} + +.sd-card .sd-card-footer { + border: none; +} + +.sd-card .sd-card-footer .sd-card-text { + max-width: 220px; + margin-left: auto; + margin-right: auto; +} + +html[data-theme="dark"] .sd-shadow-sm { + --sd-color-shadow: #6e6e6e; +} + diff --git a/docs/_static/theme_overrides.css b/docs/_static/theme_overrides.css deleted file mode 100644 index 63ee6cc74ce..00000000000 --- a/docs/_static/theme_overrides.css +++ /dev/null @@ -1,13 +0,0 @@ -/* override table width restrictions */ -@media screen and (min-width: 767px) { - - .wy-table-responsive table td { - /* !important prevents the common CSS stylesheets from overriding - this as on RTD they are 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"name": "stderr", + "output_type": "stream", + "text": [ + "Outfile was changed to '{'name': 'outfile', 'old': None, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.foo'), 'owner': <__main__.AdvancedComponent object at 0x7fa105f4fe20>, 'type': 'change'}'\n" + ] + }, + { + "data": { + "text/html": [ + "
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An advanced technique

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infile/home/aknierim/dev/ctapipe/docs/examples/test.fooinput file name (default: traitlets.Undefined)
outfile/home/aknierim/dev/ctapipe/docs/examples/out.foooutput file name (default: traitlets.Undefined)
value1-1Value to use (default: -1)
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" + ], + "text/plain": [ + "<__main__.AdvancedComponent at 0x7fa105f4fe20>" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "AdvancedComponent(infile=\"test.foo\", outfile=\"out.foo\")" ] @@ -138,9 +215,26 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Subarray : MonteCarloArray\n", + "Num Tels : 180\n", + "Footprint: 4.92 km2\n", + "\n", + " Type Count Tel IDs \n", + "----------------- ----- ---------------\n", + " SST_ASTRI_CHEC 120 30-99,131-180 \n", + " LST_LST_LSTCam 4 1-4 \n", + "MST_MST_NectarCam 28 100-124,128-130\n", + " MST_MST_FlashCam 28 5-29,125-127 \n" + ] + } + ], "source": [ "from ctapipe.instrument import SubarrayDescription, TelescopeDescription\n", "\n", @@ -150,9 +244,41 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 7, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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a component that contains parameters that are per-telescope configurable

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param[('type', '*', 5.0)]Something configurable with telescope patterns. (default: traitlets.Undefined)
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" + ], + "text/plain": [ + "<__main__.TelescopeWiseComponent at 0x7fa1704b9280>" + ] + }, + "execution_count": 7, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "TelescopeWiseComponent(subarray=subarray)" ] @@ -186,7 +312,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 8, "metadata": {}, "outputs": [], "source": [ @@ -244,9 +370,128 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 9, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "MyTool\n", + "

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do some things and stuff

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config_files[] (default: traitlets.Undefined)
iterations5Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format[%(name)s]%(highlevel)s %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level30Set the log level by value or name. (default: 30)
logging_config{}\n", + " Configure additional log handlers.\n", + "\n", + " The default stderr logs handler is configured by the\n", + " log_level, log_datefmt and log_format settings.\n", + "\n", + " This configuration can be used to configure additional handlers\n", + " (e.g. to output the log to a file) or for finer control over the\n", + " default handlers.\n", + "\n", + " If provided this should be a logging configuration dictionary, for\n", + " more information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", + "\n", + " This dictionary is merged with the base logging configuration which\n", + " defines the following:\n", + "\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + "\n", + " This example adds a new handler that writes to a file:\n", + "\n", + " .. code-block:: python\n", + "\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + "\n", + " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", + "

Components:\n", + "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", + "

\n", + "" + ], + "text/plain": [ + "<__main__.MyTool at 0x7fa170490cd0>" + ] + }, + "execution_count": 9, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool = MyTool()\n", "tool" @@ -254,9 +499,78 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 10, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "do some things and stuff\n", + "\n", + "Options\n", + "=======\n", + "The options below are convenience aliases to configurable class-options,\n", + "as listed in the \"Equivalent to\" description-line of the aliases.\n", + "To see all configurable class-options for some , use:\n", + " --help-all\n", + "\n", + "-q, --quiet\n", + " Disable console logging.\n", + " Equivalent to: [--Tool.quiet=True]\n", + "-v, --verbose\n", + " Set log level to DEBUG\n", + " Equivalent to: [--Tool.log_level=DEBUG]\n", + "--overwrite\n", + " Overwrite existing output files without asking\n", + " Equivalent to: [--Tool.overwrite=True]\n", + "--debug\n", + " Set log-level to debug, for the most verbose logging.\n", + " Equivalent to: [--Application.log_level=10]\n", + "--show-config\n", + " Show the application's configuration (human-readable format)\n", + " Equivalent to: [--Application.show_config=True]\n", + "--show-config-json\n", + " Show the application's configuration (json format)\n", + " Equivalent to: [--Application.show_config_json=True]\n", + "-c, --config=...\n", + " Default: []\n", + " Equivalent to: [--Tool.config_files]\n", + "--log-level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + " Equivalent to: [--Tool.log_level]\n", + "-l, --log-file=\n", + " Filename for the log\n", + " Default: None\n", + " Equivalent to: [--Tool.log_file]\n", + "--log-file-level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + " Equivalent to: [--Tool.log_file_level]\n", + "--provenance-log=\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--Tool.provenance_log]\n", + "--infile=\n", + " input file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.infile]\n", + "--outfile=\n", + " output file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.outfile]\n", + "--iterations=\n", + " Number of times to run\n", + " Default: 5\n", + " Equivalent to: [--MyTool.iterations]\n", + "\n", + "To see all available configurables, use `--help-all`.\n", + "\n" + ] + } + ], "source": [ "tool.print_help()" ] @@ -270,9 +584,322 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "do some things and stuff\n", + "\n", + "Options\n", + "=======\n", + "The options below are convenience aliases to configurable class-options,\n", + "as listed in the \"Equivalent to\" description-line of the aliases.\n", + "To see all configurable class-options for some , use:\n", + " --help-all\n", + "\n", + "-q, --quiet\n", + " Disable console logging.\n", + " Equivalent to: [--Tool.quiet=True]\n", + "-v, --verbose\n", + " Set log level to DEBUG\n", + " Equivalent to: [--Tool.log_level=DEBUG]\n", + "--overwrite\n", + " Overwrite existing output files without asking\n", + " Equivalent to: [--Tool.overwrite=True]\n", + "--debug\n", + " Set log-level to debug, for the most verbose logging.\n", + " Equivalent to: [--Application.log_level=10]\n", + "--show-config\n", + " Show the application's configuration (human-readable format)\n", + " Equivalent to: [--Application.show_config=True]\n", + "--show-config-json\n", + " Show the application's configuration (json format)\n", + " Equivalent to: [--Application.show_config_json=True]\n", + "-c, --config=...\n", + " Default: []\n", + " Equivalent to: [--Tool.config_files]\n", + "--log-level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + " Equivalent to: [--Tool.log_level]\n", + "-l, --log-file=\n", + " Filename for the log\n", + " Default: None\n", + " Equivalent to: [--Tool.log_file]\n", + "--log-file-level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + " Equivalent to: [--Tool.log_file_level]\n", + "--provenance-log=\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--Tool.provenance_log]\n", + "--infile=\n", + " input file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.infile]\n", + "--outfile=\n", + " output file name\n", + " Default: traitlets.Undefined\n", + " Equivalent to: [--AdvancedComponent.outfile]\n", + "--iterations=\n", + " Number of times to run\n", + " Default: 5\n", + " Equivalent to: [--MyTool.iterations]\n", + "\n", + "Class options\n", + "=============\n", + "The command-line option below sets the respective configurable class-parameter:\n", + " --Class.parameter=value\n", + "This line is evaluated in Python, so simple expressions are allowed.\n", + "For instance, to set `C.a=[0,1,2]`, you may type this:\n", + " --C.a='range(3)'\n", + "\n", + "Application(SingletonConfigurable) options\n", + "------------------------------------------\n", + "--Application.log_datefmt=\n", + " The date format used by logging formatters for %(asctime)s\n", + " Default: '%Y-%m-%d %H:%M:%S'\n", + "--Application.log_format=\n", + " The Logging format template\n", + " Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "--Application.log_level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + "--Application.logging_config==...\n", + " Configure additional log handlers.\n", + " The default stderr logs handler is configured by the log_level, log_datefmt\n", + " and log_format settings.\n", + " This configuration can be used to configure additional handlers (e.g. to\n", + " output the log to a file) or for finer control over the default handlers.\n", + " If provided this should be a logging configuration dictionary, for more\n", + " information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-\n", + " dictschema\n", + " This dictionary is merged with the base logging configuration which defines\n", + " the following:\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + " This example adds a new handler that writes to a file:\n", + " .. code-block:: python\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + " Default: {}\n", + "--Application.show_config=\n", + " Instead of starting the Application, dump configuration to stdout\n", + " Default: False\n", + "--Application.show_config_json=\n", + " Instead of starting the Application, dump configuration to stdout (as JSON)\n", + " Default: False\n", + "\n", + "Tool(Application) options\n", + "-------------------------\n", + "--Tool.config_files=...\n", + " Default: []\n", + "--Tool.log_config==...\n", + " Default: {}\n", + "--Tool.log_datefmt=\n", + " The date format used by logging formatters for %(asctime)s\n", + " Default: '%Y-%m-%d %H:%M:%S'\n", + "--Tool.log_file=\n", + " Filename for the log\n", + " Default: None\n", + "--Tool.log_file_level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + "--Tool.log_format=\n", + " The Logging format template\n", + " Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "--Tool.log_level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + "--Tool.logging_config==...\n", + " Configure additional log handlers.\n", + " The default stderr logs handler is configured by the log_level, log_datefmt\n", + " and log_format settings.\n", + " This configuration can be used to configure additional handlers (e.g. to\n", + " output the log to a file) or for finer control over the default handlers.\n", + " If provided this should be a logging configuration dictionary, for more\n", + " information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-\n", + " dictschema\n", + " This dictionary is merged with the base logging configuration which defines\n", + " the following:\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + " This example adds a new handler that writes to a file:\n", + " .. code-block:: python\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + " Default: {}\n", + "--Tool.overwrite=\n", + " Default: False\n", + "--Tool.provenance_log=\n", + " Default: traitlets.Undefined\n", + "--Tool.quiet=\n", + " Default: False\n", + "--Tool.show_config=\n", + " Instead of starting the Application, dump configuration to stdout\n", + " Default: False\n", + "--Tool.show_config_json=\n", + " Instead of starting the Application, dump configuration to stdout (as JSON)\n", + " Default: False\n", + "\n", + "MyTool(Tool) options\n", + "--------------------\n", + "--MyTool.config_files=...\n", + " Default: []\n", + "--MyTool.iterations=\n", + " Number of times to run\n", + " Default: 5\n", + "--MyTool.log_config==...\n", + " Default: {}\n", + "--MyTool.log_datefmt=\n", + " The date format used by logging formatters for %(asctime)s\n", + " Default: '%Y-%m-%d %H:%M:%S'\n", + "--MyTool.log_file=\n", + " Filename for the log\n", + " Default: None\n", + "--MyTool.log_file_level=\n", + " Logging Level for File Logging\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 'INFO'\n", + "--MyTool.log_format=\n", + " The Logging format template\n", + " Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "--MyTool.log_level=\n", + " Set the log level by value or name.\n", + " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + " Default: 30\n", + "--MyTool.logging_config==...\n", + " Configure additional log handlers.\n", + " The default stderr logs handler is configured by the log_level, log_datefmt\n", + " and log_format settings.\n", + " This configuration can be used to configure additional handlers (e.g. to\n", + " output the log to a file) or for finer control over the default handlers.\n", + " If provided this should be a logging configuration dictionary, for more\n", + " information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-\n", + " dictschema\n", + " This dictionary is merged with the base logging configuration which defines\n", + " the following:\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + " This example adds a new handler that writes to a file:\n", + " .. code-block:: python\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + " Default: {}\n", + "--MyTool.overwrite=\n", + " Default: False\n", + "--MyTool.provenance_log=\n", + " Default: traitlets.Undefined\n", + "--MyTool.quiet=\n", + " Default: False\n", + "--MyTool.show_config=\n", + " Instead of starting the Application, dump configuration to stdout\n", + " Default: False\n", + "--MyTool.show_config_json=\n", + " Instead of starting the Application, dump configuration to stdout (as JSON)\n", + " Default: False\n", + "\n", + "MyComponent(Component) options\n", + "------------------------------\n", + "--MyComponent.value=\n", + " Value to use\n", + " Default: -1\n", + "\n", + "AdvancedComponent(Component) options\n", + "------------------------------------\n", + "--AdvancedComponent.infile=\n", + " input file name\n", + " Default: traitlets.Undefined\n", + "--AdvancedComponent.outfile=\n", + " output file name\n", + " Default: traitlets.Undefined\n", + "--AdvancedComponent.value1=\n", + " Value to use\n", + " Default: -1\n", + "\n", + "SecondaryMyComponent(MyComponent) options\n", + "-----------------------------------------\n", + "--SecondaryMyComponent.value=\n", + " Value to use\n", + " Default: -1\n", + "\n", + "TelescopeWiseComponent(TelescopeComponent) options\n", + "--------------------------------------------------\n", + "--TelescopeWiseComponent.param=...\n", + " Something configurable with telescope patterns.\n", + " Default: [('type', '*', 5.0)]\n", + "\n" + ] + } + ], "source": [ "tool.print_help(classes=True)" ] @@ -295,9 +922,18 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 12, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:52,057 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170483f40>, 'type': 'change'}'\n", + "2023-07-03 17:24:52,559 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n" + ] + } + ], "source": [ "try:\n", " tool.run(argv=[\"--infile\", str(GAMMA_FILE), \"--outfile\", \"out.csv\"])\n", @@ -307,9 +943,27 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 13, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:52,798 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): Loading config from '[]'\n", + "2023-07-03 17:24:52,800 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", + "2023-07-03 17:24:52,802 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170483520>, 'type': 'change'}'\n", + "2023-07-03 17:24:52,803 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 3 iterations...\n", + "2023-07-03 17:24:52,803 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", + "2023-07-03 17:24:52,903 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", + "2023-07-03 17:24:53,005 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", + "2023-07-03 17:24:53,106 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", + "2023-07-03 17:24:53,108 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", + "2023-07-03 17:24:53,114 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,116 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n" + ] + } + ], "source": [ "tool.log_format = \"%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s\"\n", "\n", @@ -340,9 +994,2637 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 14, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:53,149 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Starting: mytool\n", + "2023-07-03 17:24:53,325 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): Loading config from '[]'\n", + "2023-07-03 17:24:53,327 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", + "2023-07-03 17:24:53,329 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486340>, 'type': 'change'}'\n", + "2023-07-03 17:24:53,330 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [], 'iterations': 3, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s', 'log_level': 10, 'logging_config': {}, 'overwrite': False, 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'), 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'value1': -1, 'MyComponent': {'value': -1}}}}\n", + "2023-07-03 17:24:53,330 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 3 iterations...\n", + "2023-07-03 17:24:53,330 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", + "2023-07-03 17:24:53,331 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,331 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,432 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", + "2023-07-03 17:24:53,433 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,435 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,537 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", + "2023-07-03 17:24:53,538 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,539 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:53,640 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", + "2023-07-03 17:24:53,642 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", + "2023-07-03 17:24:53,649 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,651 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,653 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:53,668 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.write_provenance): PROVENANCE: '[\n", + " {\n", + " \"activity_name\": \"mytool\",\n", + " \"activity_uuid\": \"c2c31b3c-b5cd-4c46-8581-e0cf17c94af0\",\n", + " \"start\": {\n", + " \"time_utc\": \"2023-07-03T15:24:51.880\"\n", + " },\n", + " \"stop\": {\n", + " \"time_utc\": \"2023-07-03T15:24:52.561\"\n", + " },\n", + " \"system\": {\n", + " \"ctapipe_version\": \"0.19.1.dev27+g062fd966.d20230703\",\n", + " \"ctapipe_resources_version\": \"not installed\",\n", + " \"eventio_version\": \"1.11.0\",\n", + " \"ctapipe_svc_path\": null,\n", + " \"executable\": \"/home/aknierim/.local/conda/envs/cta-dev/bin/python\",\n", + " \"platform\": {\n", + " \"architecture_bits\": \"64bit\",\n", + " \"architecture_linkage\": \"ELF\",\n", + " \"machine\": \"x86_64\",\n", + " \"processor\": \"x86_64\",\n", + " \"node\": \"e5b-dell-09\",\n", + " \"version\": \"#47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jun 21 15:35:31 UTC 2\",\n", + " \"system\": \"Linux\",\n", + " \"release\": \"5.19.0-46-generic\",\n", + " \"libcver\": [\n", + " \"glibc\",\n", + " \"2.35\"\n", + " ],\n", + " \"n_cpus\": 12,\n", + " \"boot_time\": \"2023-07-03T07:18:46.000\"\n", + " },\n", + " \"python\": {\n", + " \"version_string\": \"3.9.16 | packaged by conda-forge | (main, Feb 1 2023, 21:39:03) \\n[GCC 11.3.0]\",\n", + " \"version\": [\n", + " \"3\",\n", + " \"9\",\n", + " \"16\"\n", + " ],\n", + " \"compiler\": \"GCC 11.3.0\",\n", + " \"implementation\": \"CPython\",\n", + " \"packages\": [\n", + " {\n", + " \"name\": \"Babel\",\n", + " \"version\": \"2.12.1\"\n", + " },\n", + " {\n", + " \"name\": \"Cython\",\n", + " \"version\": \"0.29.34\"\n", + " },\n", + " {\n", + " \"name\": \"Jinja2\",\n", + " \"version\": \"3.1.2\"\n", + " },\n", + " {\n", + " \"name\": \"MarkupSafe\",\n", + " \"version\": \"2.1.2\"\n", + " },\n", + " {\n", + " \"name\": \"Pillow\",\n", + " \"version\": \"9.5.0\"\n", + " },\n", + " {\n", + " \"name\": \"PyQt5\",\n", + " \"version\": \"5.15.7\"\n", + " },\n", + " {\n", + " \"name\": \"PyQt5-sip\",\n", + " \"version\": \"12.11.0\"\n", + " },\n", + " {\n", + " \"name\": \"PySocks\",\n", + " \"version\": \"1.7.1\"\n", + " },\n", + " {\n", + " \"name\": \"PyYAML\",\n", + " \"version\": \"6.0\"\n", + " },\n", + " {\n", + " \"name\": \"Pygments\",\n", + " \"version\": \"2.15.1\"\n", + " },\n", + " {\n", + " \"name\": \"QtPy\",\n", + " \"version\": \"2.3.1\"\n", + " },\n", + " {\n", + " \"name\": \"Send2Trash\",\n", + " \"version\": \"1.8.2\"\n", + " },\n", + " {\n", + " \"name\": \"Sphinx\",\n", + " \"version\": \"6.2.1\"\n", + " },\n", + " {\n", + " \"name\": \"accessible-pygments\",\n", + " \"version\": \"0.0.4\"\n", + " },\n", + " {\n", + " \"name\": \"alabaster\",\n", + " \"version\": \"0.7.13\"\n", + " },\n", + " {\n", + " \"name\": \"anyio\",\n", + " \"version\": \"3.6.2\"\n", + " },\n", + " {\n", + " \"name\": \"argon2-cffi\",\n", + " \"version\": \"21.3.0\"\n", + " },\n", + " {\n", + " \"name\": \"argon2-cffi-bindings\",\n", + " \"version\": \"21.2.0\"\n", + " },\n", + " {\n", + " \"name\": \"astropy\",\n", + " \"version\": \"5.2.2\"\n", + " },\n", + " {\n", + " \"name\": \"asttokens\",\n", + " \"version\": \"2.2.1\"\n", + " },\n", + " {\n", + " \"name\": \"async-lru\",\n", + " \"version\": \"2.0.2\"\n", + " },\n", + " {\n", + " \"name\": \"attrs\",\n", + " \"version\": \"23.1.0\"\n", + " },\n", + " {\n", + " \"name\": \"backcall\",\n", + " \"version\": \"0.2.0\"\n", + " },\n", + " {\n", + " \"name\": \"backports.functools-lru-cache\",\n", + " \"version\": \"1.6.4\"\n", + " },\n", + " {\n", + " \"name\": \"beautifulsoup4\",\n", + " \"version\": \"4.12.2\"\n", + " },\n", + " {\n", + " \"name\": \"black\",\n", + " \"version\": \"23.3.0\"\n", + " },\n", + " {\n", + " \"name\": \"bleach\",\n", + " \"version\": \"6.0.0\"\n", + " },\n", + " {\n", + " \"name\": \"bokeh\",\n", + " \"version\": \"2.4.3\"\n", + " },\n", + " {\n", + " \"name\": \"brotlipy\",\n", + " \"version\": \"0.7.0\"\n", + " },\n", + " {\n", + " \"name\": \"cached-property\",\n", + " \"version\": \"1.5.2\"\n", + " },\n", + " {\n", + " \"name\": \"certifi\",\n", + " \"version\": \"2023.5.7\"\n", + " },\n", + " {\n", + " \"name\": \"cffi\",\n", + " \"version\": \"1.15.1\"\n", + " },\n", + " {\n", + " \"name\": \"cfgv\",\n", + " \"version\": \"3.3.1\"\n", + " },\n", + " {\n", + " \"name\": \"charset-normalizer\",\n", + " \"version\": \"3.1.0\"\n", + " },\n", + " {\n", + " \"name\": \"click\",\n", + " \"version\": \"8.1.3\"\n", + " },\n", + " {\n", + " \"name\": \"click-default-group\",\n", + " \"version\": \"1.2.2\"\n", + " },\n", + " {\n", + " \"name\": \"colorama\",\n", + " \"version\": \"0.4.6\"\n", + " },\n", + " {\n", + " \"name\": \"comm\",\n", + " \"version\": \"0.1.3\"\n", + " },\n", + " {\n", + " \"name\": \"contourpy\",\n", + " \"version\": \"1.0.7\"\n", + " },\n", + " {\n", + " \"name\": \"corsikaio\",\n", + " \"version\": \"0.2.6.post1\"\n", + " },\n", + " {\n", + " \"name\": \"coverage\",\n", + " \"version\": \"7.2.5\"\n", + " },\n", + " {\n", + " \"name\": \"cryptography\",\n", + " \"version\": \"40.0.2\"\n", + " },\n", + " {\n", + " \"name\": \"ctapipe\",\n", + " \"version\": \"0.19.1.dev27+g062fd966.d20230510\"\n", + " },\n", + " {\n", + " \"name\": \"cycler\",\n", + " \"version\": \"0.11.0\"\n", + " },\n", + " {\n", + " \"name\": \"debugpy\",\n", + " \"version\": \"1.6.7\"\n", + " },\n", + " {\n", + " \"name\": \"decorator\",\n", + " \"version\": \"5.1.1\"\n", + " },\n", + " {\n", + " \"name\": \"defusedxml\",\n", + " \"version\": \"0.7.1\"\n", + " },\n", + " {\n", + " \"name\": \"distlib\",\n", + " \"version\": \"0.3.6\"\n", + " },\n", + " {\n", + " \"name\": \"docutils\",\n", + " \"version\": \"0.18.1\"\n", + " },\n", + " {\n", + " \"name\": \"entrypoints\",\n", + " \"version\": \"0.4\"\n", + " },\n", + " {\n", + " \"name\": \"eventio\",\n", + " \"version\": \"1.11.0\"\n", + " },\n", + " {\n", + " \"name\": \"exceptiongroup\",\n", + " \"version\": \"1.1.1\"\n", + " },\n", + " {\n", + " \"name\": \"executing\",\n", + " \"version\": \"1.2.0\"\n", + " },\n", + " {\n", + " \"name\": 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\"/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/home/aknierim/.local/conda/envs/cta-dev/bin:/home/aknierim/.local/conda/condabin:/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin\",\n", + " \"LD_LIBRARY_PATH\": null,\n", + " \"DYLD_LIBRARY_PATH\": null,\n", + " \"USER\": \"aknierim\",\n", + " \"HOME\": \"/home/aknierim\",\n", + " \"SHELL\": \"/bin/zsh\"\n", + " },\n", + " \"arguments\": [\n", + " \"/home/aknierim/.local/conda/envs/cta-dev/lib/python3.9/site-packages/ipykernel_launcher.py\",\n", + " \"-f\",\n", + " \"/home/aknierim/.local/share/jupyter/runtime/kernel-8df72055-1d05-4a90-8466-961002b0e8ef.json\"\n", + " ],\n", + " \"start_time_utc\": \"2023-07-03T15:24:53.322\"\n", + " },\n", + " \"input\": [],\n", + " \"output\": [],\n", + " \"config\": {\n", + " \"MyTool\": {\n", + " \"config_files\": [],\n", + " \"iterations\": 3,\n", + " \"log_config\": {},\n", + " \"log_datefmt\": \"%Y-%m-%d %H:%M:%S\",\n", + " \"log_file\": null,\n", + " \"log_file_level\": \"INFO\",\n", + " \"log_format\": \"%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s\",\n", + " \"log_level\": 10,\n", + " \"logging_config\": {},\n", + " \"overwrite\": false,\n", + " \"provenance_log\": \"/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log\",\n", + " \"quiet\": false,\n", + " \"show_config\": false,\n", + " \"show_config_json\": false,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"SecondaryMyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"TelescopeWiseComponent\": {\n", + " \"param\": [\n", + " [\n", + " \"type\",\n", + " \"*\",\n", + " 5.0\n", + " ]\n", + " ]\n", + " },\n", + " \"AdvancedComponent\": {\n", + " \"infile\": \"/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst\",\n", + " \"outfile\": \"/home/aknierim/dev/ctapipe/docs/examples/out.csv\",\n", + " \"value1\": -1,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " }\n", + " }\n", + " }\n", + " },\n", + " \"status\": \"completed\",\n", + " \"duration_min\": 0.00818333333336696\n", + " }\n", + "]'\n", + "2023-07-03 17:24:53,683 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (application.exit): Exiting application: mytool\n" + ] + } + ], "source": [ "try:\n", " tool.run(\n", @@ -368,9 +3650,19 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 15, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:53,720 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Starting: mytool\n", + "2023-07-03 17:24:53,931 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486880>, 'type': 'change'}'\n", + "2023-07-03 17:24:54,032 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n" + ] + } + ], "source": [ "tool.iterations = 1\n", "tool.log_level = 0\n", @@ -390,9 +3682,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 16, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "bad value: The 'iterations' trait of a MyTool instance expected an int, not the str 'badval'.\n" + ] + } + ], "source": [ "try:\n", " tool.iterations = \"badval\"\n", @@ -411,9 +3711,17 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 17, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:54,141 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/Another.txt'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486880>, 'type': 'change'}'\n" + ] + } + ], "source": [ "tool.advanced.outfile = \"Another.txt\"" ] @@ -434,7 +3742,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 18, "metadata": {}, "outputs": [], "source": [ @@ -443,9 +3751,4382 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 19, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:54,332 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", + "2023-07-03 17:24:54,334 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/foo.txt'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486e20>, 'type': 'change'}'\n", + "2023-07-03 17:24:54,335 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [PosixPath('/home/aknierim/dev/ctapipe/docs/examples/Tools.json')], 'iterations': 5, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '[%(name)s]%(highlevel)s %(message)s', 'log_level': 10, 'logging_config': {}, 'overwrite': False, 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/something.txt'), 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/foo.txt'), 'value1': -1, 'MyComponent': {'value': -1}}}}\n", + "2023-07-03 17:24:54,336 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 5 iterations...\n", + "2023-07-03 17:24:54,336 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", + "2023-07-03 17:24:54,336 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,337 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,437 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", + "2023-07-03 17:24:54,439 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,441 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,542 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", + "2023-07-03 17:24:54,543 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,543 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,644 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 3\n", + "2023-07-03 17:24:54,645 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,647 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,748 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 4\n", + "2023-07-03 17:24:54,749 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,749 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", + "2023-07-03 17:24:54,850 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", + "2023-07-03 17:24:54,852 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", + "2023-07-03 17:24:54,858 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,859 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,861 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,862 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + "2023-07-03 17:24:54,864 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", + 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\"version\": \"22.12.0\"\n", + " },\n", + " {\n", + " \"name\": \"tqdm\",\n", + " \"version\": \"4.65.0\"\n", + " },\n", + " {\n", + " \"name\": \"traitlets\",\n", + " \"version\": \"5.9.0\"\n", + " },\n", + " {\n", + " \"name\": \"typing_extensions\",\n", + " \"version\": \"4.5.0\"\n", + " },\n", + " {\n", + " \"name\": \"tzdata\",\n", + " \"version\": \"2023.3\"\n", + " },\n", + " {\n", + " \"name\": \"ukkonen\",\n", + " \"version\": \"1.0.1\"\n", + " },\n", + " {\n", + " \"name\": \"unicodedata2\",\n", + " \"version\": \"15.0.0\"\n", + " },\n", + " {\n", + " \"name\": \"urllib3\",\n", + " \"version\": \"1.26.15\"\n", + " },\n", + " {\n", + " \"name\": \"virtualenv\",\n", + " \"version\": \"20.23.0\"\n", + " },\n", + " {\n", + " \"name\": \"wcwidth\",\n", + " \"version\": \"0.2.6\"\n", + " },\n", + " {\n", + " \"name\": \"webencodings\",\n", + " \"version\": \"0.5.1\"\n", + " },\n", + " {\n", + " \"name\": \"websocket-client\",\n", + " \"version\": \"1.5.1\"\n", + " },\n", + " {\n", + " \"name\": \"wheel\",\n", + " \"version\": \"0.40.0\"\n", + " },\n", + " {\n", + " \"name\": \"widgetsnbextension\",\n", + " \"version\": \"4.0.7\"\n", + " },\n", + " {\n", + " \"name\": \"zipp\",\n", + " \"version\": \"3.15.0\"\n", + " },\n", + " {\n", + " \"name\": \"zstandard\",\n", + " \"version\": \"0.19.0\"\n", + " }\n", + " ]\n", + " },\n", + " \"environment\": {\n", + " \"CONDA_DEFAULT_ENV\": \"cta-dev\",\n", + " \"CONDA_PREFIX\": \"/home/aknierim/.local/conda/envs/cta-dev\",\n", + " \"CONDA_PYTHON_EXE\": \"/home/aknierim/.local/conda/bin/python\",\n", + " \"CONDA_EXE\": \"/home/aknierim/.local/conda/bin/conda\",\n", + " \"CONDA_PROMPT_MODIFIER\": \"(cta-dev) \",\n", + " \"CONDA_SHLVL\": \"1\",\n", + " \"PATH\": \"/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/home/aknierim/.local/conda/envs/cta-dev/bin:/home/aknierim/.local/conda/condabin:/home/aknierim/.codon/bin:/home/aknierim/.local/texlive/2022/bin/x86_64-linux:/home/aknierim/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin\",\n", + " \"LD_LIBRARY_PATH\": null,\n", + " \"DYLD_LIBRARY_PATH\": null,\n", + " \"USER\": \"aknierim\",\n", + " \"HOME\": \"/home/aknierim\",\n", + " \"SHELL\": \"/bin/zsh\"\n", + " },\n", + " \"arguments\": [\n", + " \"/home/aknierim/.local/conda/envs/cta-dev/lib/python3.9/site-packages/ipykernel_launcher.py\",\n", + " \"-f\",\n", + " \"/home/aknierim/.local/share/jupyter/runtime/kernel-8df72055-1d05-4a90-8466-961002b0e8ef.json\"\n", + " ],\n", + " \"start_time_utc\": \"2023-07-03T15:24:54.328\"\n", + " },\n", + " \"input\": [\n", + " {\n", + " \"url\": \"/home/aknierim/dev/ctapipe/docs/examples/Tools.json\",\n", + " \"role\": \"Tool Configuration\"\n", + " }\n", + " ],\n", + " \"output\": [],\n", + " \"config\": {\n", + " \"MyTool\": {\n", + " \"config_files\": [\n", + " \"/home/aknierim/dev/ctapipe/docs/examples/Tools.json\"\n", + " ],\n", + " \"iterations\": 5,\n", + " \"log_config\": {},\n", + " \"log_datefmt\": \"%Y-%m-%d %H:%M:%S\",\n", + " \"log_file\": null,\n", + " \"log_file_level\": \"INFO\",\n", + " \"log_format\": \"[%(name)s]%(highlevel)s %(message)s\",\n", + " \"log_level\": 10,\n", + " \"logging_config\": {},\n", + " \"overwrite\": false,\n", + " \"provenance_log\": \"/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log\",\n", + " \"quiet\": false,\n", + " \"show_config\": false,\n", + " \"show_config_json\": false,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"SecondaryMyComponent\": {\n", + " \"value\": -1\n", + " },\n", + " \"TelescopeWiseComponent\": {\n", + " \"param\": [\n", + " [\n", + " \"type\",\n", + " \"*\",\n", + " 5.0\n", + " ]\n", + " ]\n", + " },\n", + " \"AdvancedComponent\": {\n", + " \"infile\": \"/home/aknierim/dev/ctapipe/docs/examples/something.txt\",\n", + " \"outfile\": \"/home/aknierim/dev/ctapipe/docs/examples/foo.txt\",\n", + " \"value1\": -1,\n", + " \"MyComponent\": {\n", + " \"value\": -1\n", + " }\n", + " }\n", + " }\n", + " },\n", + " \"status\": \"completed\",\n", + " \"duration_min\": 0.01166666666650329\n", + " }\n", + "]'\n", + "2023-07-03 17:24:54,902 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (application.exit): Exiting application: mytool\n" + ] + } + ], "source": [ "try:\n", " tool2.run(argv=[\"--config\", \"Tools.json\"])\n", @@ -455,34 +8136,61 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 20, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/home/aknierim/dev/ctapipe/docs/examples/something.txt\n" + ] + } + ], "source": [ "print(tool2.advanced.infile)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 21, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "{'MyTool': {'config_files': ['Tools.json'], 'log_level': 'DEBUG'}, 'AdvancedComponent': {'infile': 'something.txt', 'outfile': 'foo.txt'}}\n" + ] + } + ], "source": [ "print(tool2.config)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 22, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "True" + ] + }, + "execution_count": 22, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool2.is_setup" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 23, "metadata": {}, "outputs": [], "source": [ @@ -491,16 +8199,27 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 24, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": 24, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool3.is_setup" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 25, "metadata": {}, "outputs": [], "source": [ @@ -509,27 +8228,283 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 26, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": 26, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool3.is_setup" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 27, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "MyTool\n", + "

\n", + "

do some things and stuff

\n", + "
\n", + "

\n", + "\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + " \n", + "
config_files[] (default: traitlets.Undefined)
iterations5Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format[%(name)s]%(highlevel)s %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level30Set the log level by value or name. (default: 30)
logging_config{}\n", + " Configure additional log handlers.\n", + "\n", + " The default stderr logs handler is configured by the\n", + " log_level, log_datefmt and log_format settings.\n", + "\n", + " This configuration can be used to configure additional handlers\n", + " (e.g. to output the log to a file) or for finer control over the\n", + " default handlers.\n", + "\n", + " If provided this should be a logging configuration dictionary, for\n", + " more information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", + "\n", + " This dictionary is merged with the base logging configuration which\n", + " defines the following:\n", + "\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + "\n", + " This example adds a new handler that writes to a file:\n", + "\n", + " .. code-block:: python\n", + "\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + "\n", + " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", + "

Components:\n", + "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", + "

\n", + "" + ], + "text/plain": [ + "<__main__.MyTool at 0x7fa1985c6610>" + ] + }, + "execution_count": 27, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool3" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 28, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "2023-07-03 17:24:55,026 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa1704f4250>, 'type': 'change'}'\n" + ] + }, + { + "data": { + "text/html": [ + "MyTool\n", + "

\n", + "

do some things and stuff

\n", + "
\n", + "

\n", + "\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + " \n", + "
config_files[] (default: traitlets.Undefined)
iterations1Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level0Set the log level by value or name. (default: 30)
logging_config{}\n", + " Configure additional log handlers.\n", + "\n", + " The default stderr logs handler is configured by the\n", + " log_level, log_datefmt and log_format settings.\n", + "\n", + " This configuration can be used to configure additional handlers\n", + " (e.g. to output the log to a file) or for finer control over the\n", + " default handlers.\n", + "\n", + " If provided this should be a logging configuration dictionary, for\n", + " more information see:\n", + " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", + "\n", + " This dictionary is merged with the base logging configuration which\n", + " defines the following:\n", + "\n", + " * A logging formatter intended for interactive use called\n", + " ``console``.\n", + " * A logging handler that writes to stderr called\n", + " ``console`` which uses the formatter ``console``.\n", + " * A logger with the name of this application set to ``DEBUG``\n", + " level.\n", + "\n", + " This example adds a new handler that writes to a file:\n", + "\n", + " .. code-block:: python\n", + "\n", + " c.Application.logging_config = {\n", + " 'handlers': {\n", + " 'file': {\n", + " 'class': 'logging.FileHandler',\n", + " 'level': 'DEBUG',\n", + " 'filename': '',\n", + " }\n", + " },\n", + " 'loggers': {\n", + " '': {\n", + " 'level': 'DEBUG',\n", + " # NOTE: if you don't list the default \"console\"\n", + " # handler here then it will be disabled\n", + " 'handlers': ['console', 'file'],\n", + " },\n", + " }\n", + " }\n", + "\n", + " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", + "

Components:\n", + "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", + "

\n", + "" + ], + "text/plain": [ + "<__main__.MyTool at 0x7fa170490cd0>" + ] + }, + "execution_count": 28, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.setup()\n", "tool" @@ -537,9 +8512,41 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 29, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
\n", + "SecondaryMyComponent\n", + "

\n", + "

A second component

\n", + "
\n", + "

\n", + "\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + " \n", + "
value-1Value to use (default: -1)
\n", + "
" + ], + "text/plain": [ + "<__main__.SecondaryMyComponent at 0x7fa1704f4a00>" + ] + }, + "execution_count": 29, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.comp2" ] @@ -553,18 +8560,84 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 30, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "{'MyTool': {'config_files': [],\n", + " 'iterations': 1,\n", + " 'log_config': {},\n", + " 'log_datefmt': '%Y-%m-%d %H:%M:%S',\n", + " 'log_file': None,\n", + " 'log_file_level': 'INFO',\n", + " 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s',\n", + " 'log_level': 0,\n", + " 'logging_config': {},\n", + " 'overwrite': False,\n", + " 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'),\n", + " 'quiet': False,\n", + " 'show_config': False,\n", + " 'show_config_json': False,\n", + " 'MyComponent': {'value': -1},\n", + " 'SecondaryMyComponent': {'value': -1},\n", + " 'TelescopeWiseComponent': {'param': TelescopePatternList([('type',\n", + " '*',\n", + " 5.0)])},\n", + " 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'),\n", + " 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'),\n", + " 'value1': -1,\n", + " 'MyComponent': {'value': -1}}}}" + ] + }, + "execution_count": 30, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.get_current_config()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 31, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "{'MyTool': {'config_files': [],\n", + " 'iterations': 12,\n", + " 'log_config': {},\n", + " 'log_datefmt': '%Y-%m-%d %H:%M:%S',\n", + " 'log_file': None,\n", + " 'log_file_level': 'INFO',\n", + " 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s',\n", + " 'log_level': 0,\n", + " 'logging_config': {},\n", + " 'overwrite': False,\n", + " 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'),\n", + " 'quiet': False,\n", + " 'show_config': False,\n", + " 'show_config_json': False,\n", + " 'MyComponent': {'value': -1},\n", + " 'SecondaryMyComponent': {'value': -1},\n", + " 'TelescopeWiseComponent': {'param': TelescopePatternList([('type',\n", + " '*',\n", + " 5.0)])},\n", + " 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'),\n", + " 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'),\n", + " 'value1': -1,\n", + " 'MyComponent': {'value': -1}}}}" + ] + }, + "execution_count": 31, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "tool.iterations = 12\n", "tool.get_current_config()" @@ -579,9 +8652,244 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 32, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "# Configuration file for mytool.\n", + "\n", + "c = get_config() #noqa\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# Application(SingletonConfigurable) configuration\n", + "#------------------------------------------------------------------------------\n", + "## This is an application.\n", + "\n", + "## The date format used by logging formatters for %(asctime)s\n", + "# Default: '%Y-%m-%d %H:%M:%S'\n", + "# c.Application.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", + "\n", + "## The Logging format template\n", + "# Default: '[%(name)s]%(highlevel)s %(message)s'\n", + "# c.Application.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", + "\n", + "## Set the log level by value or name.\n", + "# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + "# Default: 30\n", + "# c.Application.log_level = 30\n", + "\n", + "## Configure additional log handlers.\n", + "# \n", + "# The default stderr logs handler is configured by the log_level, log_datefmt\n", + "# and log_format settings.\n", + "# \n", + "# This configuration can be used to configure additional handlers (e.g. to\n", + "# output the log to a file) or for finer control over the default handlers.\n", + "# \n", + "# If provided this should be a logging configuration dictionary, for more\n", + "# information see:\n", + "# https://docs.python.org/3/library/logging.config.html#logging-config-\n", + "# dictschema\n", + "# \n", + "# This dictionary is merged with the base logging configuration which defines\n", + "# the following:\n", + "# \n", + "# * A logging formatter intended for interactive use called\n", + "# ``console``.\n", + "# * A logging handler that writes to stderr called\n", + "# ``console`` which uses the formatter ``console``.\n", + "# * A logger with the name of this application set to ``DEBUG``\n", + "# level.\n", + "# \n", + "# This example adds a new handler that writes to a file:\n", + "# \n", + "# .. code-block:: python\n", + "# \n", + "# c.Application.logging_config = {\n", + "# 'handlers': {\n", + "# 'file': {\n", + "# 'class': 'logging.FileHandler',\n", + "# 'level': 'DEBUG',\n", + "# 'filename': '',\n", + "# }\n", + "# },\n", + "# 'loggers': {\n", + "# '': {\n", + "# 'level': 'DEBUG',\n", + "# # NOTE: if you don't list the default \"console\"\n", + "# # handler here then it will be disabled\n", + "# 'handlers': ['console', 'file'],\n", + "# },\n", + "# }\n", + "# }\n", + "# Default: {}\n", + "# c.Application.logging_config = {}\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout\n", + "# Default: False\n", + "# c.Application.show_config = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", + "# Default: False\n", + "# c.Application.show_config_json = False\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# Tool(Application) configuration\n", + "#------------------------------------------------------------------------------\n", + "## This is an application.\n", + "\n", + "# Default: []\n", + "# c.Tool.config_files = []\n", + "\n", + "# Default: {}\n", + "# c.Tool.log_config = {}\n", + "\n", + "## The date format used by logging formatters for %(asctime)s\n", + "# See also: Application.log_datefmt\n", + "# c.Tool.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", + "\n", + "## Filename for the log\n", + "# Default: None\n", + "# c.Tool.log_file = None\n", + "\n", + "## Logging Level for File Logging\n", + "# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", + "# Default: 'INFO'\n", + "# c.Tool.log_file_level = 'INFO'\n", + "\n", + "## The Logging format template\n", + "# See also: Application.log_format\n", + "# c.Tool.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", + "\n", + "## Set the log level by value or name.\n", + "# See also: Application.log_level\n", + "# c.Tool.log_level = 30\n", + "\n", + "## \n", + "# See also: Application.logging_config\n", + "# c.Tool.logging_config = {}\n", + "\n", + "# Default: False\n", + "# c.Tool.overwrite = False\n", + "\n", + "# Default: traitlets.Undefined\n", + "# c.Tool.provenance_log = traitlets.Undefined\n", + "\n", + "# Default: False\n", + "# c.Tool.quiet = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout\n", + "# See also: Application.show_config\n", + "# c.Tool.show_config = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", + "# See also: Application.show_config_json\n", + "# c.Tool.show_config_json = False\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# MyTool(Tool) configuration\n", + "#------------------------------------------------------------------------------\n", + "# See also: Tool.config_files\n", + "# c.MyTool.config_files = []\n", + "\n", + "## Number of times to run\n", + "# Default: 5\n", + "# c.MyTool.iterations = 5\n", + "\n", + "# See also: Tool.log_config\n", + "# c.MyTool.log_config = {}\n", + "\n", + "## The date format used by logging formatters for %(asctime)s\n", + "# See also: Application.log_datefmt\n", + "# c.MyTool.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", + "\n", + "## Filename for the log\n", + "# See also: Tool.log_file\n", + "# c.MyTool.log_file = None\n", + "\n", + "## Logging Level for File Logging\n", + "# See also: Tool.log_file_level\n", + "# c.MyTool.log_file_level = 'INFO'\n", + "\n", + "## The Logging format template\n", + "# See also: Application.log_format\n", + "# c.MyTool.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", + "\n", + "## Set the log level by value or name.\n", + "# See also: Application.log_level\n", + "# c.MyTool.log_level = 30\n", + "\n", + "## \n", + "# See also: Application.logging_config\n", + "# c.MyTool.logging_config = {}\n", + "\n", + "# See also: Tool.overwrite\n", + "# c.MyTool.overwrite = False\n", + "\n", + "# See also: Tool.provenance_log\n", + "# c.MyTool.provenance_log = traitlets.Undefined\n", + "\n", + "# See also: Tool.quiet\n", + "# c.MyTool.quiet = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout\n", + "# See also: Application.show_config\n", + "# c.MyTool.show_config = False\n", + "\n", + "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", + "# See also: Application.show_config_json\n", + "# c.MyTool.show_config_json = False\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# MyComponent(Component) configuration\n", + "#------------------------------------------------------------------------------\n", + "## A Component that does stuff\n", + "\n", + "## Value to use\n", + "# Default: -1\n", + "# c.MyComponent.value = -1\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# AdvancedComponent(Component) configuration\n", + "#------------------------------------------------------------------------------\n", + "## An advanced technique\n", + "\n", + "## input file name\n", + "# Default: traitlets.Undefined\n", + "# c.AdvancedComponent.infile = traitlets.Undefined\n", + "\n", + "## output file name\n", + "# Default: traitlets.Undefined\n", + "# c.AdvancedComponent.outfile = traitlets.Undefined\n", + "\n", + "## Value to use\n", + "# Default: -1\n", + "# c.AdvancedComponent.value1 = -1\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# SecondaryMyComponent(MyComponent) configuration\n", + "#------------------------------------------------------------------------------\n", + "## A second component\n", + "\n", + "## Value to use\n", + "# See also: MyComponent.value\n", + "# c.SecondaryMyComponent.value = -1\n", + "\n", + "#------------------------------------------------------------------------------\n", + "# TelescopeWiseComponent(TelescopeComponent) configuration\n", + "#------------------------------------------------------------------------------\n", + "## a component that contains parameters that are per-telescope configurable\n", + "\n", + "## Something configurable with telescope patterns.\n", + "# Default: [('type', '*', 5.0)]\n", + "# c.TelescopeWiseComponent.param = [('type', '*', 5.0)]\n", + "\n" + ] + } + ], "source": [ "print(tool.generate_config_file())" ] @@ -595,14 +8903,22 @@ } ], "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, "language_info": { "codemirror_mode": { - "name": "ipython" + "name": "ipython", + "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", - "nbconvert_exporter": "python" + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.9.16" } }, "nbformat": 4, diff --git a/docs/getting_started/index.rst b/docs/getting_started/index.rst index 07bad01c378..92e6ba6b614 100644 --- a/docs/getting_started/index.rst +++ b/docs/getting_started/index.rst @@ -1,3 +1,4 @@ + .. _getting_started: ****************************** @@ -77,7 +78,6 @@ Change to the directory where you cloned ``ctapipe``, and type: .. code-block:: console - $ conda env create -n cta-dev -f environment.yml @@ -238,11 +238,11 @@ You can do this at any time and more than once. It just moves the changes from your local branch on your development machine to your fork on github. -++++++++++++++++++++++++ -4. make a *Pull Request* -++++++++++++++++++++++++ +++++++++++++++++++++++++++ +4. Create a *Pull Request* +++++++++++++++++++++++++++ -When you're happy, you make PR on on your github fork page by clicking +When you're happy, you create PR on on your github fork page by clicking "pull request". You can also do this via *GitHub Desktop* if you have that installed, by pushing the pull-request button in the upper-right-hand corner. @@ -279,7 +279,7 @@ When the PR is accepted, the reviewer will merge your branch into the *master* repo on cta-observatory's account. +++++++++++++++++++++++++++++ -6. delete your feature branch +6. Delete your feature branch +++++++++++++++++++++++++++++ since it is no longer needed (assuming it was accepted and merged in): diff --git a/docs/index.rst b/docs/index.rst index def76c2a40d..37d4fe4ecf8 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -1,5 +1,7 @@ .. include:: references.txt +:html_theme.sidebar_secondary.remove: true + .. _ctapipe: ============================================== @@ -8,11 +10,19 @@ Prototype CTA Pipeline Framework (``ctapipe``) .. currentmodule:: ctapipe -**version**: |version| +**Version**: |version| + +.. image:: ctapipe_logo.webp + :class: only-light + :align: center + :width: 90% + :alt: The ctapipe logo. -.. image:: ctapipe_logo.png +.. image:: ctapipe_logo_dark.webp + :class: only-dark :align: center :width: 90% + :alt: The ctapipe logo. What is ctapipe? ================ @@ -33,25 +43,150 @@ What is ctapipe? .. _ctapipe_docs: -General documentation -===================== +.. General documentation +.. ===================== .. toctree:: :maxdepth: 1 - :glob: + :hidden: - getting_started_users/index - getting_started/index + User Guide + Developer Guide + ctapipe_api/index development/index tutorials/index examples/index tools/index FAQ data_models/index - ctapipe_api/index bibliography changelog + + +.. grid:: 3 + + .. grid-item-card:: + + :octicon:`book;40px` + + User Guide + ^^^^^^^^^^ + + Learn how to get started as a user. This guide + will help you install ctapipe. + + +++ + + .. button-ref:: getting_started_users/index + :expand: + :color: primary + :click-parent: + + To the user guide + + + .. grid-item-card:: + + :octicon:`person-add;40px` + + Developer Guide + ^^^^^^^^^^^^^^^ + + Learn how to get started as a developer. + This guide will help you install ctapipe for development + and explains how to contribute. + + +++ + + .. button-ref:: getting_started/index + :expand: + :color: primary + :click-parent: + + To the developer guide + + + .. grid-item-card:: + + :octicon:`git-pull-request;40px` + + Development Guidelines + ^^^^^^^^^^^^^^^^^^^^^^ + + These guidelines explain the coding style and the workflow. The ctapipe + enhancement proposals (CEPs) can also be found here. + + +++ + + .. button-ref:: development/index + :expand: + :color: primary + :click-parent: + + To the development guidelines + + + .. grid-item-card:: + + :octicon:`code;40px` + + API Docs + ^^^^^^^^ + + The API docs contain detailed descriptions of + of the various modules and functions included + in ctapipe. + + +++ + + .. button-ref:: ctapipe_api/index + :expand: + :color: primary + :click-parent: + + To API docs + + + .. grid-item-card:: + + :octicon:`mortar-board;40px` + + Tutorials + ^^^^^^^^^ + + A collection of tutorials aimed at new users + and developers to familiarize with ctapipe. + + +++ + + .. button-ref:: tutorials/index + :expand: + :color: primary + :click-parent: + + To the tutorials + + + .. grid-item-card:: + + :octicon:`light-bulb;40px` + + Examples + ^^^^^^^^ + + Some lower-level examples of features included in the ctapipe API. + + +++ + + .. button-ref:: examples/index + :expand: + :color: primary + :click-parent: + + To the examples + + Module API Status (relative to next release) ============================================ @@ -65,3 +200,7 @@ Development Help * Development workflow examples from AstroPy: https://astropy.readthedocs.org/en/latest/development/workflow/development_workflow.html * GIT tutorial: https://www.atlassian.com/git/tutorials/syncing/git-pull * Code distribution and Packaging https://packaging.python.org/en/latest/ + + + + diff --git a/docs/versions.json b/docs/versions.json new file mode 100644 index 00000000000..325cfcaf9eb --- /dev/null +++ b/docs/versions.json @@ -0,0 +1,12 @@ +[ + { + "name": "latest", + "version": "latest", + "url": "https://ctapipe.readthedocs.io/en/latest/" + }, + { + "name": "stable", + "version": "stable", + "url": "https://ctapipe.readthedocs.io/en/stable/" + }, +] From 40aab03aa4f5809176e1ac460eaaa8b90740c5e5 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 15:53:33 +0200 Subject: [PATCH 11/37] Update setup.cfg pydata dependency --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index d3e867f8638..8f835079cd3 100644 --- a/setup.cfg +++ b/setup.cfg @@ -57,7 +57,7 @@ tests = docs = sphinx - sphinx_rtd_theme + pydata_sphinx_theme sphinx_automodapi nbsphinx numpydoc From bc9d6d7096dd6446bac1e94f7c1b7023915b2089 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 16:00:11 +0200 Subject: [PATCH 12/37] Added sphinx-design --- setup.cfg | 1 + 1 file changed, 1 insertion(+) diff --git a/setup.cfg b/setup.cfg index 8f835079cd3..0858479d898 100644 --- a/setup.cfg +++ b/setup.cfg @@ -61,6 +61,7 @@ docs = sphinx_automodapi nbsphinx numpydoc + sphinx-design jupyter notebook graphviz From 07ce4bafb771940a8b8b3e318787d4198f9b62e9 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 4 Jul 2023 17:17:22 +0200 Subject: [PATCH 13/37] Fixed sphinx warning for ctapipe.compat.StrEnum --- docs/conf.py | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index cc5843d1020..813c75a266b 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -126,8 +126,9 @@ def setup(app): ("py:class", "astropy.coordinates.baseframe.BaseCoordinateFrame"), ("py:class", "astropy.table.table.Table"), ("py:class", "eventio.simtel.simtelfile.SimTelFile"), - ("py:obj", "ctapipe.calib.CameraCalibrator"), # temporary fix to ignore warning - ("py:obj", "ctapipe.calib.GainSelector"), # temporary fix to ignore warning + ("py:class", "ctapipe.compat.StrEnum"), + ("py:obj", "ctapipe.calib.CameraCalibrator"), # temporary fix to ignore warning + ("py:obj", "ctapipe.calib.GainSelector"), # temporary fix to ignore warning ] # The suffix(es) of source filenames. @@ -237,8 +238,8 @@ def setup(app): "header_links_before_dropdown": 6, "navbar_start": ["navbar-logo", "version-switcher"], "switcher": { - "version_match": version_match, - "json_url": json_url, + "version_match": version_match, + "json_url": json_url, }, "use_edit_page_button": True, "icon_links": [ @@ -246,7 +247,7 @@ def setup(app): "name": "CTA Observatory", "url": "https://www.cta-observatory.org/", "type": "url", - "icon": "https://www.cta-observatory.org/wp-content/themes/ctao/favicon.ico" + "icon": "https://www.cta-observatory.org/wp-content/themes/ctao/favicon.ico", }, ], } From c025fe334da63c057eafd36313bc2a8dd01681d1 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Wed, 5 Jul 2023 13:00:14 +0200 Subject: [PATCH 14/37] Fixed sphinx warnings for `ctapipe.instrument` * Fixed warnings by changing ``automodapi`` to ``automodule`` at certain locations * Added change log rst file * Removed unused import of ``pydata_sphinx_theme`` * Updated environment.yml --- docs/_static/ctapipe.css | 2 +- docs/changes/2373.maintenance.rst | 3 +++ docs/conf.py | 10 ++++++---- docs/ctapipe_api/calib/index_camera.rst | 1 - docs/ctapipe_api/instrument/camera.rst | 1 + docs/ctapipe_api/instrument/camera_geometry.rst | 2 +- docs/index.rst | 2 +- docs/versions.json | 12 ------------ environment.yml | 4 +++- 9 files changed, 16 insertions(+), 21 deletions(-) create mode 100644 docs/changes/2373.maintenance.rst delete mode 100644 docs/versions.json diff --git a/docs/_static/ctapipe.css b/docs/_static/ctapipe.css index 243e4af60cd..c7093391670 100644 --- a/docs/_static/ctapipe.css +++ b/docs/_static/ctapipe.css @@ -42,6 +42,6 @@ } html[data-theme="dark"] .sd-shadow-sm { - --sd-color-shadow: #6e6e6e; + --sd-color-shadow: #6e6e6e } diff --git a/docs/changes/2373.maintenance.rst b/docs/changes/2373.maintenance.rst new file mode 100644 index 00000000000..8e5a70349d3 --- /dev/null +++ b/docs/changes/2373.maintenance.rst @@ -0,0 +1,3 @@ +* Switched to ``PyData`` theme for docs +* Updated ``Sphinx`` to version 6.2.1 +* Updated front page of docs diff --git a/docs/conf.py b/docs/conf.py index 813c75a266b..3ea55bb1e6c 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -29,7 +29,6 @@ # Get configuration information from setup.cfg from configparser import ConfigParser -import pydata_sphinx_theme import ctapipe setup_cfg = ConfigParser() @@ -127,8 +126,12 @@ def setup(app): ("py:class", "astropy.table.table.Table"), ("py:class", "eventio.simtel.simtelfile.SimTelFile"), ("py:class", "ctapipe.compat.StrEnum"), - ("py:obj", "ctapipe.calib.CameraCalibrator"), # temporary fix to ignore warning - ("py:obj", "ctapipe.calib.GainSelector"), # temporary fix to ignore warning +] + +# temporary fixes to ignore reference warnings and ensure build +nitpick_ignore += [ + ("py:obj", "ctapipe.calib.CameraCalibrator"), + ("py:obj", "ctapipe.calib.GainSelector"), ] # The suffix(es) of source filenames. @@ -219,7 +222,6 @@ def setup(app): on_rtd = os.environ.get("READTHEDOCS", None) == "True" html_theme = "pydata_sphinx_theme" -# html_theme_path = [pydata_sphinx_theme.__path__] html_favicon = "_static/favicon.ico" diff --git a/docs/ctapipe_api/calib/index_camera.rst b/docs/ctapipe_api/calib/index_camera.rst index 897acf55a82..06302ce2216 100644 --- a/docs/ctapipe_api/calib/index_camera.rst +++ b/docs/ctapipe_api/calib/index_camera.rst @@ -38,7 +38,6 @@ Reference/API ************* .. automodapi:: ctapipe.calib.camera - :no-main-docstr: ------------------------------ diff --git a/docs/ctapipe_api/instrument/camera.rst b/docs/ctapipe_api/instrument/camera.rst index 0b45cad8fa0..a24db0326d9 100644 --- a/docs/ctapipe_api/instrument/camera.rst +++ b/docs/ctapipe_api/instrument/camera.rst @@ -22,5 +22,6 @@ Reference/API .. automodapi:: ctapipe.instrument.camera :no-inheritance-diagram: + .. automodapi:: ctapipe.instrument.camera.description :no-inheritance-diagram: diff --git a/docs/ctapipe_api/instrument/camera_geometry.rst b/docs/ctapipe_api/instrument/camera_geometry.rst index 94336be2760..2650cbb0a41 100644 --- a/docs/ctapipe_api/instrument/camera_geometry.rst +++ b/docs/ctapipe_api/instrument/camera_geometry.rst @@ -91,4 +91,4 @@ Reference/API ============= .. automodapi:: ctapipe.instrument.camera.geometry - :no-inheritance-diagram: + :no-inheritance-diagram: diff --git a/docs/index.rst b/docs/index.rst index 37d4fe4ecf8..e550bdfef93 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -52,8 +52,8 @@ What is ctapipe? User Guide Developer Guide - ctapipe_api/index development/index + ctapipe_api/index tutorials/index examples/index tools/index diff --git a/docs/versions.json b/docs/versions.json deleted file mode 100644 index 325cfcaf9eb..00000000000 --- a/docs/versions.json +++ /dev/null @@ -1,12 +0,0 @@ -[ - { - "name": "latest", - "version": "latest", - "url": "https://ctapipe.readthedocs.io/en/latest/" - }, - { - "name": "stable", - "version": "stable", - "url": "https://ctapipe.readthedocs.io/en/stable/" - }, -] diff --git a/environment.yml b/environment.yml index a45df14902b..bbc3bad0b47 100644 --- a/environment.yml +++ b/environment.yml @@ -36,7 +36,8 @@ dependencies: - setuptools - sphinx - sphinx-automodapi - - sphinx_rtd_theme + - pydata-sphinx-theme + - sphinx-design - tomli - towncrier - tqdm @@ -47,4 +48,5 @@ dependencies: - zlib - zstandard - eventio>=1.9.1 + - jinja2 - ffmpeg # for making movies in the documentation From 2aed4dee284bfcb6271b416c2e1fc74eaf4cc9e0 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Wed, 5 Jul 2023 16:29:32 +0200 Subject: [PATCH 15/37] Attempt at a temporary workaround --- docs/conf.py | 10 ++++++++-- docs/ctapipe_api/instrument/camera_geometry.rst | 2 +- docs/ctapipe_api/instrument/camera_readout.rst | 4 ++-- 3 files changed, 11 insertions(+), 5 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 3ea55bb1e6c..1a7c0595a6c 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -59,7 +59,7 @@ numpydoc_show_class_members = False -# numpydoc_class_members_toctree = False +numpydoc_class_members_toctree = False nbsphinx_timeout = 200 # allow max 2 minutes to build each notebook @@ -128,10 +128,15 @@ def setup(app): ("py:class", "ctapipe.compat.StrEnum"), ] -# temporary fixes to ignore reference warnings and ensure build +# temporary workaround to ignore reference warnings and ensure build nitpick_ignore += [ ("py:obj", "ctapipe.calib.CameraCalibrator"), ("py:obj", "ctapipe.calib.GainSelector"), + ("py:obj", "CameraGeometry"), + ("py:obj", "ctapipe.instrument.camera.CameraGeometry"), + ("py:obj", "ctapipe.instrument.camera.CameraDescription"), + ("py:obj", "ctapipe.instrument.camera.PixelShape"), + ("py:obj", "ctapipe.instrument.camera.CameraReadout"), ] # The suffix(es) of source filenames. @@ -256,6 +261,7 @@ def setup(app): html_sidebars = { "**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"], + "index.rst": [], } diff --git a/docs/ctapipe_api/instrument/camera_geometry.rst b/docs/ctapipe_api/instrument/camera_geometry.rst index 2650cbb0a41..94336be2760 100644 --- a/docs/ctapipe_api/instrument/camera_geometry.rst +++ b/docs/ctapipe_api/instrument/camera_geometry.rst @@ -91,4 +91,4 @@ Reference/API ============= .. automodapi:: ctapipe.instrument.camera.geometry - :no-inheritance-diagram: + :no-inheritance-diagram: diff --git a/docs/ctapipe_api/instrument/camera_readout.rst b/docs/ctapipe_api/instrument/camera_readout.rst index b455257b5a1..d98cc235ddb 100644 --- a/docs/ctapipe_api/instrument/camera_readout.rst +++ b/docs/ctapipe_api/instrument/camera_readout.rst @@ -32,8 +32,8 @@ Input/Output You can write out a `CameraReadout` by using the ``CameraReadout.to_table()`` - method to turn it into a `~astropy.table.Table`, and then call its ``write()`` - function. Reading it back in can be done with ``CameraReadout.from_table()``. +method to turn it into a `~astropy.table.Table`, and then call its ``write()`` +function. Reading it back in can be done with ``CameraReadout.from_table()``. .. code-block:: python From 8b60b9a560867ebc6fb1771d3bfde8e74f69f878 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Wed, 5 Jul 2023 17:07:43 +0200 Subject: [PATCH 16/37] Added ``:noindex:`` option to certain rst files * Added ``:noindex:`` to get rid of warnings * Works at least locally --- docs/ctapipe_api/instrument/camera.rst | 1 + docs/ctapipe_api/instrument/camera_geometry.rst | 1 + docs/ctapipe_api/instrument/camera_readout.rst | 1 + 3 files changed, 3 insertions(+) diff --git a/docs/ctapipe_api/instrument/camera.rst b/docs/ctapipe_api/instrument/camera.rst index a24db0326d9..fdcfad70b42 100644 --- a/docs/ctapipe_api/instrument/camera.rst +++ b/docs/ctapipe_api/instrument/camera.rst @@ -25,3 +25,4 @@ Reference/API .. automodapi:: ctapipe.instrument.camera.description :no-inheritance-diagram: + :noindex: diff --git a/docs/ctapipe_api/instrument/camera_geometry.rst b/docs/ctapipe_api/instrument/camera_geometry.rst index 94336be2760..fedbf2138f3 100644 --- a/docs/ctapipe_api/instrument/camera_geometry.rst +++ b/docs/ctapipe_api/instrument/camera_geometry.rst @@ -92,3 +92,4 @@ Reference/API .. automodapi:: ctapipe.instrument.camera.geometry :no-inheritance-diagram: + :noindex: diff --git a/docs/ctapipe_api/instrument/camera_readout.rst b/docs/ctapipe_api/instrument/camera_readout.rst index d98cc235ddb..817a199cc58 100644 --- a/docs/ctapipe_api/instrument/camera_readout.rst +++ b/docs/ctapipe_api/instrument/camera_readout.rst @@ -55,3 +55,4 @@ Reference/API .. automodapi:: ctapipe.instrument.camera.readout :no-inheritance-diagram: + :noindex: From f3f6d00239d6515dafd3420b07fcb7ad55f3e496 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Fri, 7 Jul 2023 09:25:06 +0200 Subject: [PATCH 17/37] Workarounds for duplicate reference warnings * use autosummary and some manually added titles instead of automodapi in ``ctapipe_api/instrument/camera.rst`` and ``ctapipe_api/calib/index.rst`` * allows to circumvent duplicate reference warnings * removed ``nipick_ignore`` entries added in previous commits of this ``update-docs`` branch --- docs/conf.py | 10 ----- docs/ctapipe_api/calib/index.rst | 29 +++++++++--- docs/ctapipe_api/instrument/camera.rst | 28 +++++++++--- .../instrument/camera_geometry.rst | 45 +++++++++---------- .../ctapipe_api/instrument/camera_readout.rst | 1 - docs/ctapipe_api/instrument/index.rst | 3 +- docs/ctapipe_api/instrument/telescope.rst | 1 + 7 files changed, 70 insertions(+), 47 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 1a7c0595a6c..ab78da49645 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -128,16 +128,6 @@ def setup(app): ("py:class", "ctapipe.compat.StrEnum"), ] -# temporary workaround to ignore reference warnings and ensure build -nitpick_ignore += [ - ("py:obj", "ctapipe.calib.CameraCalibrator"), - ("py:obj", "ctapipe.calib.GainSelector"), - ("py:obj", "CameraGeometry"), - ("py:obj", "ctapipe.instrument.camera.CameraGeometry"), - ("py:obj", "ctapipe.instrument.camera.CameraDescription"), - ("py:obj", "ctapipe.instrument.camera.PixelShape"), - ("py:obj", "ctapipe.instrument.camera.CameraReadout"), -] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: diff --git a/docs/ctapipe_api/calib/index.rst b/docs/ctapipe_api/calib/index.rst index 28a105b5f61..0be57e5fccc 100644 --- a/docs/ctapipe_api/calib/index.rst +++ b/docs/ctapipe_api/calib/index.rst @@ -1,8 +1,12 @@ .. _calib: -=============================== - Calibration (`~ctapipe.calib`) -=============================== +.. temporary worakaround to at least have calib in the title, + the reason is the usage of autosummary in the Reference/API + section below + +======================================== +Calibration (``calib``) +======================================== .. currentmodule:: ctapipe.calib @@ -44,6 +48,19 @@ Submodules Reference/API ============= -.. automodapi:: ctapipe.calib - :no-inheritance-diagram: - :noindex: +.. What follows is a *temporary* workaround to circumvent + various warnings of duplicate references caused by + calling automodapi on the camera package. + +ctapipe.calib Package +--------------------- + +Calibration + +.. raw:: html + +

Classes

+ +.. autosummary:: + ~camera.CameraCalibrator + ~camera.GainSelector diff --git a/docs/ctapipe_api/instrument/camera.rst b/docs/ctapipe_api/instrument/camera.rst index fdcfad70b42..27dfeb322db 100644 --- a/docs/ctapipe_api/instrument/camera.rst +++ b/docs/ctapipe_api/instrument/camera.rst @@ -5,8 +5,8 @@ Camera Description ================== -The `CameraDescription` contains classes holding information about the -Cherenkov camera, namely the `CameraGeometry` and `CameraReadout` classes. +The `~CameraDescription` contains classes holding information about the +Cherenkov camera, namely the `~CameraGeometry` and `~CameraReadout` classes. .. toctree:: @@ -17,12 +17,28 @@ Cherenkov camera, namely the `CameraGeometry` and `CameraReadout` classes. Reference/API -------------- +============= +.. What follows is a temporary workaround to circumvent + various warnings of duplicate references caused by + calling automodapi on the camera package. + +ctapipe.instrument.camera Package +--------------------------------- + +.. raw:: html + +

Classes

+ + +.. autosummary:: + + ~CameraDescription + ~CameraGeometry + ~PixelShape + ~camera.geometry.UnknownPixelShapeWarning + ~CameraReadout -.. automodapi:: ctapipe.instrument.camera - :no-inheritance-diagram: .. automodapi:: ctapipe.instrument.camera.description :no-inheritance-diagram: - :noindex: diff --git a/docs/ctapipe_api/instrument/camera_geometry.rst b/docs/ctapipe_api/instrument/camera_geometry.rst index fedbf2138f3..ddf30ae6e8c 100644 --- a/docs/ctapipe_api/instrument/camera_geometry.rst +++ b/docs/ctapipe_api/instrument/camera_geometry.rst @@ -5,7 +5,7 @@ Camera Geometries ================= -The `CameraGeometry` provides an easy way to work with images or data +The `~ctapipe.instrument.CameraGeometry` provides an easy way to work with images or data cubes related to Cherenkov Cameras. In *ctapipe*, a camera image is simply a flat 1D array (or 2D if time information is included), where there is one value per pixel. Of course, to work with such an array, @@ -14,38 +14,38 @@ Since CTA has at least 6 different camera types, and may have multiple versions of each as revisions are made, it is necessary to have a common way to describe all cameras. -So far there are several ways to construct a `CameraGeometry`: +So far there are several ways to construct a `~ctapipe.instrument.CameraGeometry`: -* `~ctapipe.io.EventSource` instances have a ``subarray`` attribute, +* `~ctapipe.io.EventSource` instances have a :attr:`~ctapipe.io.EventSource.subarray` attribute, e.g. to obtain the geometry for the telescope with id 1, use: - ``source.subarray.tel[1].camera.geometry``. - `~ctapipe.io.TableLoader` also has the ``.subarray`` attribute. + ``source.subarray.tel[1].camera.geometry``. The + `~ctapipe.io.TableLoader` instance also has the ``.subarray`` attribute. -* use the `CameraGeometry` constructor, where one has to specify all +* use the `~ctapipe.instrument.CameraGeometry` constructor, where one has to specify all necessary information (pixel positions, types, areas, etc) * load it from a pre-written file (which can be in any format - supported by ``astropy.table``, as long as that format allows for + supported by `astropy.table`, as long as that format allows for header-keywords as well as table entries. -Once loaded, the `CameraGeometry` object gives you access the pixel +Once loaded, the `~ctapipe.instrument.CameraGeometry` object gives you access the pixel positions, areas, neighbors, and shapes. -`CameraGeometry` is used by most image processing algorithms in the +`~ctapipe.instrument.CameraGeometry` is used by most image processing algorithms in the `ctapipe.image` module, as well as displays in the `ctapipe.visualization` module. Input/Output ------------ -You can write out a `CameraGeometry` by using the `CameraGeometry.to_table()` - method to turn it into an `astropy.table.Table`, and then call its `~astropy.table.Table.write` - function. Reading it back in can be done with `CameraGeometry.from_table()` +You can write out a `~ctapipe.instrument.CameraGeometry` by using the `CameraGeometry.to_table()` +method to turn it into an `astropy.table.Table`, and then call its `~astropy.table.Table.write` +function. Reading it back in can be done with `~ctapipe.instrument.CameraGeometry.from_table()` .. code-block:: python - geom = CameraGeometry(...) # constructed elsewhere + geom = ~ctapipe.instrument.CameraGeometry(...) # constructed elsewhere geom.to_table().write('mycam.fits.gz') # FITS output geom.to_table().write('mycam.h5', path='/cameras/mycam') # hdf5 output @@ -53,28 +53,28 @@ You can write out a `CameraGeometry` by using the `CameraGeometry.to_table()` # later read back in: - geom = CameraGeometry.from_table('mycam.ecsv', format='ascii.ecsv') - geom = CameraGeometry.from_table('mycam.fits.gz') - geom = CameraGeometry.from_table('mycam.h5', path='/cameras/mycam') + geom = ~ctapipe.instrument.CameraGeometry.from_table('mycam.ecsv', format='ascii.ecsv') + geom = ~ctapipe.instrument.CameraGeometry.from_table('mycam.fits.gz') + geom = ~ctapipe.instrument.CameraGeometry.from_table('mycam.h5', path='/cameras/mycam') A note on Pixel Neighbors ------------------------- -The `CameraGeometry` object provides two pixel-neighbor -representations: a *neighbor adjacency list* (in the ``neighbors`` -attribute) and a *pixel adjacency matrix* (in the ``neighbor_matrix`` +The `~ctapipe.instrument.CameraGeometry` object provides two pixel-neighbor +representations: a *neighbor adjacency list* (in the :attr:`~CameraGeometry.neighbors` +attribute) and a *pixel adjacency matrix* (in the :attr:`~CameraGeometry.neighbor_matrix` attribute). The former is a list of lists, where element *i* is a list of neighbors *j* of the *i*th pixel. The latter is a 2D matrix where row *i* is a boolean mask of pixels that are neighbors. It is not necessary to load or specify either of these neighbor -representations when constructing a `CameraGeometry`, since they +representations when constructing a `~ctapipe.instrument.CameraGeometry`, since they will be computed on-the-fly if left blank, using a KD-tree nearest-neighbor algorithm. It is recommended that all algorithms that need to be computationally -fast use the ``neighbor_matrix`` attribute, particularly in conjunction -with ``numpy`` operations, since it is quite speed-efficient. +fast use the :attr:`~CameraGeometry.neighbor_matrix` attribute, particularly in conjunction +with `numpy` operations, since it is quite speed-efficient. Examples -------- @@ -92,4 +92,3 @@ Reference/API .. automodapi:: ctapipe.instrument.camera.geometry :no-inheritance-diagram: - :noindex: diff --git a/docs/ctapipe_api/instrument/camera_readout.rst b/docs/ctapipe_api/instrument/camera_readout.rst index 817a199cc58..d98cc235ddb 100644 --- a/docs/ctapipe_api/instrument/camera_readout.rst +++ b/docs/ctapipe_api/instrument/camera_readout.rst @@ -55,4 +55,3 @@ Reference/API .. automodapi:: ctapipe.instrument.camera.readout :no-inheritance-diagram: - :noindex: diff --git a/docs/ctapipe_api/instrument/index.rst b/docs/ctapipe_api/instrument/index.rst index b3b98c040b1..3e2a53ebf36 100644 --- a/docs/ctapipe_api/instrument/index.rst +++ b/docs/ctapipe_api/instrument/index.rst @@ -6,10 +6,11 @@ Instrument (`~ctapipe.instrument`) .. currentmodule:: ctapipe.instrument + Introduction ============ -The `ctapipe.instrument` module contains classes and methods for +The `~ctapipe.instrument` module contains classes and methods for describing the instrumental layout and configuration. This module is under heavy restructuring and should not be considered diff --git a/docs/ctapipe_api/instrument/telescope.rst b/docs/ctapipe_api/instrument/telescope.rst index 8f77e29c258..e30b9364ead 100644 --- a/docs/ctapipe_api/instrument/telescope.rst +++ b/docs/ctapipe_api/instrument/telescope.rst @@ -14,3 +14,4 @@ Reference/API ------------- .. automodapi:: ctapipe.instrument.telescope + :no-inheritance-diagram: From 958e5d95f1cdf1a667247af9c9708c6b43aaf047 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Fri, 7 Jul 2023 10:22:50 +0200 Subject: [PATCH 18/37] Fix heading issue --- docs/_static/ctapipe.css | 2 +- docs/ctapipe_api/calib/index.rst | 5 ++--- docs/ctapipe_api/instrument/camera.rst | 5 ++--- 3 files changed, 5 insertions(+), 7 deletions(-) diff --git a/docs/_static/ctapipe.css b/docs/_static/ctapipe.css index c7093391670..243e4af60cd 100644 --- a/docs/_static/ctapipe.css +++ b/docs/_static/ctapipe.css @@ -42,6 +42,6 @@ } html[data-theme="dark"] .sd-shadow-sm { - --sd-color-shadow: #6e6e6e + --sd-color-shadow: #6e6e6e; } diff --git a/docs/ctapipe_api/calib/index.rst b/docs/ctapipe_api/calib/index.rst index 0be57e5fccc..9cd202747dd 100644 --- a/docs/ctapipe_api/calib/index.rst +++ b/docs/ctapipe_api/calib/index.rst @@ -57,9 +57,8 @@ ctapipe.calib Package Calibration -.. raw:: html - -

Classes

+Classes +^^^^^^^ .. autosummary:: ~camera.CameraCalibrator diff --git a/docs/ctapipe_api/instrument/camera.rst b/docs/ctapipe_api/instrument/camera.rst index 27dfeb322db..ba51ca9dbda 100644 --- a/docs/ctapipe_api/instrument/camera.rst +++ b/docs/ctapipe_api/instrument/camera.rst @@ -26,10 +26,9 @@ Reference/API ctapipe.instrument.camera Package --------------------------------- -.. raw:: html - -

Classes

+Classes +^^^^^^^ .. autosummary:: From 1618eb1f9255096ff65ba846d37d09672cd02808 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Sun, 9 Jul 2023 12:30:25 +0200 Subject: [PATCH 19/37] Not adding to __all__ fixes automodapi warnings Not adding to ``__all__`` in ``ctapipe/calib/index_camera/__init__.py`` and ``ctapipe/instrument/camera/__init__.py`` fixes nitpick warnings with automodapi. Note that importing the modules is still necessary. --- ctapipe/calib/camera/__init__.py | 10 ++++++---- ctapipe/instrument/camera/__init__.py | 15 ++++++++------- 2 files changed, 14 insertions(+), 11 deletions(-) diff --git a/ctapipe/calib/camera/__init__.py b/ctapipe/calib/camera/__init__.py index d576bafd0c0..35b051c663c 100644 --- a/ctapipe/calib/camera/__init__.py +++ b/ctapipe/calib/camera/__init__.py @@ -6,7 +6,9 @@ from .calibrator import CameraCalibrator from .gainselection import GainSelector -__all__ = [ - "CameraCalibrator", - "GainSelector", -] +# __all__ = [ +# "CameraCalibrator", +# "GainSelector", +# ] + +__all__ = [] diff --git a/ctapipe/instrument/camera/__init__.py b/ctapipe/instrument/camera/__init__.py index 678ea988577..35c51460b61 100644 --- a/ctapipe/instrument/camera/__init__.py +++ b/ctapipe/instrument/camera/__init__.py @@ -2,10 +2,11 @@ from .geometry import CameraGeometry, UnknownPixelShapeWarning, PixelShape from .readout import CameraReadout -__all__ = [ - "CameraDescription", - "CameraGeometry", - "PixelShape", - "UnknownPixelShapeWarning", - "CameraReadout", -] +# __all__ = [ +# "CameraDescription", +# "CameraGeometry", +# "PixelShape", +# "UnknownPixelShapeWarning", +# "CameraReadout", +# ] +__all__ = [] From a99555b9dbdaa8510c154a4445ffd00d4c423467 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Sun, 9 Jul 2023 12:34:45 +0200 Subject: [PATCH 20/37] Change back to automodapi, rework docs front page * Change back to ``automodapi`` in ``ctapipe_api/calib/index.rst`` and ``ctapipe_api/instrument/camera.rst`` * Previous workaround no longer necessary * Fix mobile layout of front page (grid cards now display correctly) * Cleaner docs front page --- docs/ctapipe_api/calib/index.rst | 26 +++---------- docs/ctapipe_api/calib/index_camera.rst | 2 +- docs/ctapipe_api/instrument/camera.rst | 25 ++----------- docs/development/index.rst | 4 +- docs/index.rst | 50 +++++++++---------------- 5 files changed, 29 insertions(+), 78 deletions(-) diff --git a/docs/ctapipe_api/calib/index.rst b/docs/ctapipe_api/calib/index.rst index 9cd202747dd..398acfed120 100644 --- a/docs/ctapipe_api/calib/index.rst +++ b/docs/ctapipe_api/calib/index.rst @@ -1,12 +1,9 @@ .. _calib: -.. temporary worakaround to at least have calib in the title, - the reason is the usage of autosummary in the Reference/API - section below -======================================== -Calibration (``calib``) -======================================== +============================== +Calibration (`~ctapipe.calib`) +============================== .. currentmodule:: ctapipe.calib @@ -48,18 +45,5 @@ Submodules Reference/API ============= -.. What follows is a *temporary* workaround to circumvent - various warnings of duplicate references caused by - calling automodapi on the camera package. - -ctapipe.calib Package ---------------------- - -Calibration - -Classes -^^^^^^^ - -.. autosummary:: - ~camera.CameraCalibrator - ~camera.GainSelector +.. automodapi:: ctapipe.calib + :no-inheritance-diagram: diff --git a/docs/ctapipe_api/calib/index_camera.rst b/docs/ctapipe_api/calib/index_camera.rst index 06302ce2216..0827c266218 100644 --- a/docs/ctapipe_api/calib/index_camera.rst +++ b/docs/ctapipe_api/calib/index_camera.rst @@ -19,7 +19,7 @@ CTA Cameras (MC, prototypes and final camera calibration algorithms). CameraCalibrator **************** -The primary class in this module is the :class:`.CameraCalibrator`. This class handles +The primary class in this module is the `~ctapipe.calib.camera.calibrator.CameraCalibrator`. This class handles two data level transition stages for the event: * R1 -> DL0 (:ref:`image_reducers`) diff --git a/docs/ctapipe_api/instrument/camera.rst b/docs/ctapipe_api/instrument/camera.rst index ba51ca9dbda..86fdd59a431 100644 --- a/docs/ctapipe_api/instrument/camera.rst +++ b/docs/ctapipe_api/instrument/camera.rst @@ -5,8 +5,8 @@ Camera Description ================== -The `~CameraDescription` contains classes holding information about the -Cherenkov camera, namely the `~CameraGeometry` and `~CameraReadout` classes. +The `~camera.description.CameraDescription` contains classes holding information about the +Cherenkov camera, namely the `~camera.geometry.CameraGeometry` and `~camera.readout.CameraReadout` classes. .. toctree:: @@ -19,25 +19,8 @@ Cherenkov camera, namely the `~CameraGeometry` and `~CameraReadout` classes. Reference/API ============= -.. What follows is a temporary workaround to circumvent - various warnings of duplicate references caused by - calling automodapi on the camera package. - -ctapipe.instrument.camera Package ---------------------------------- - - -Classes -^^^^^^^ - -.. autosummary:: - - ~CameraDescription - ~CameraGeometry - ~PixelShape - ~camera.geometry.UnknownPixelShapeWarning - ~CameraReadout - +.. automodapi:: ctapipe.instrument.camera + :no-inheritance-diagram: .. automodapi:: ctapipe.instrument.camera.description :no-inheritance-diagram: diff --git a/docs/development/index.rst b/docs/development/index.rst index 856fdaa57ae..e214e31ad00 100644 --- a/docs/development/index.rst +++ b/docs/development/index.rst @@ -1,7 +1,7 @@ .. _guidelines: -Development Guidelines -====================== +Coding Guidelines +================= .. toctree:: diff --git a/docs/index.rst b/docs/index.rst index e550bdfef93..6485c01d5b3 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -1,6 +1,7 @@ .. include:: references.txt :html_theme.sidebar_secondary.remove: true +:html_theme.sidebar_primary.remove: true .. _ctapipe: @@ -10,7 +11,7 @@ Prototype CTA Pipeline Framework (``ctapipe``) .. currentmodule:: ctapipe -**Version**: |version| +| .. image:: ctapipe_logo.webp :class: only-light @@ -24,8 +25,18 @@ Prototype CTA Pipeline Framework (``ctapipe``) :width: 90% :alt: The ctapipe logo. -What is ctapipe? -================ +| + +**Date**: |today| **Version**: |version| + +**Useful links**: +`Source Repository `__ | +`Issue Tracker `__ | +`Discussions `__ + +**License**: BSD-3 **Python**: |python_requires| + +| ``ctapipe`` is a framework for prototyping the low-level data processing algorithms for the Cherenkov Telescope Array. @@ -34,18 +45,9 @@ What is ctapipe? structure and functionality as we explore various design choices before the 1.0 release. -* Code, feature requests, bug reports, pull requests: https://github.com/cta-observatory/ctapipe -* Docs: https://ctapipe.readthedocs.io/ -* License: BSD-3 -* Python: |python_requires| - - .. _ctapipe_docs: -.. General documentation -.. ===================== - .. toctree:: :maxdepth: 1 :hidden: @@ -64,7 +66,7 @@ What is ctapipe? -.. grid:: 3 +.. grid:: 1 2 2 3 .. grid-item-card:: @@ -111,8 +113,8 @@ What is ctapipe? :octicon:`git-pull-request;40px` - Development Guidelines - ^^^^^^^^^^^^^^^^^^^^^^ + Coding Guidelines + ^^^^^^^^^^^^^^^^^ These guidelines explain the coding style and the workflow. The ctapipe enhancement proposals (CEPs) can also be found here. @@ -186,21 +188,3 @@ What is ctapipe? To the examples - -Module API Status (relative to next release) -============================================ - -ctapipe is under activate developement and we will make breaking changes from release to release until -we reach version 1.0. - - -Development Help -================ - -* Development workflow examples from AstroPy: https://astropy.readthedocs.org/en/latest/development/workflow/development_workflow.html -* GIT tutorial: https://www.atlassian.com/git/tutorials/syncing/git-pull -* Code distribution and Packaging https://packaging.python.org/en/latest/ - - - - From 246639f0e42719d96b603baa8b8081c7bd8eddb5 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Mon, 10 Jul 2023 10:58:19 +0200 Subject: [PATCH 21/37] Ignore unused import warnings Ignore unused import warnings in ``ctapipe/calib/camera/__init__.py`` ``ctapipe/instrument/camera/__init__.py`` using ``noqa: F401``. This will allow the linting CI to run successfully, while still allowing the docs to be built with ``automodapi``. --- ctapipe/calib/camera/__init__.py | 4 ++-- ctapipe/instrument/camera/__init__.py | 6 +++--- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/ctapipe/calib/camera/__init__.py b/ctapipe/calib/camera/__init__.py index 35b051c663c..b71a6d469c8 100644 --- a/ctapipe/calib/camera/__init__.py +++ b/ctapipe/calib/camera/__init__.py @@ -3,8 +3,8 @@ Camera calibration module. """ -from .calibrator import CameraCalibrator -from .gainselection import GainSelector +from .calibrator import CameraCalibrator # noqa: F401 +from .gainselection import GainSelector # noqa: F401 # __all__ = [ # "CameraCalibrator", diff --git a/ctapipe/instrument/camera/__init__.py b/ctapipe/instrument/camera/__init__.py index 35c51460b61..c87b09a7ef9 100644 --- a/ctapipe/instrument/camera/__init__.py +++ b/ctapipe/instrument/camera/__init__.py @@ -1,6 +1,6 @@ -from .description import CameraDescription -from .geometry import CameraGeometry, UnknownPixelShapeWarning, PixelShape -from .readout import CameraReadout +from .description import CameraDescription # noqa: F401 +from .geometry import CameraGeometry, UnknownPixelShapeWarning, PixelShape # noqa: F401 +from .readout import CameraReadout # noqa: F401 # __all__ = [ # "CameraDescription", From 3c0223b09f2e0eb96e2e52c8f05a6353ad2b5cb6 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Mon, 10 Jul 2023 11:40:56 +0200 Subject: [PATCH 22/37] Fix isort failing in ctapipe/instrument/camera/__init__.py --- ctapipe/instrument/camera/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ctapipe/instrument/camera/__init__.py b/ctapipe/instrument/camera/__init__.py index c87b09a7ef9..43a0644f6f9 100644 --- a/ctapipe/instrument/camera/__init__.py +++ b/ctapipe/instrument/camera/__init__.py @@ -1,5 +1,5 @@ from .description import CameraDescription # noqa: F401 -from .geometry import CameraGeometry, UnknownPixelShapeWarning, PixelShape # noqa: F401 +from .geometry import CameraGeometry, PixelShape, UnknownPixelShapeWarning # noqa: F401 from .readout import CameraReadout # noqa: F401 # __all__ = [ From 099f601621e78c71e1895f26e414be6ab2608a92 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Mon, 10 Jul 2023 15:25:23 +0200 Subject: [PATCH 23/37] Remove html_sidebars option from conf.py --- docs/conf.py | 5 ----- 1 file changed, 5 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index ab78da49645..6c41637ed84 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -249,11 +249,6 @@ def setup(app): ], } -html_sidebars = { - "**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"], - "index.rst": [], -} - # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, From 57d348f0b2b56e5750048ab1cce87c7cbf63345e Mon Sep 17 00:00:00 2001 From: Maximilian Linhoff Date: Mon, 17 Jul 2023 11:30:46 +0200 Subject: [PATCH 24/37] Fix duplicated reference warning for muon components --- ctapipe/image/__init__.py | 2 ++ ctapipe/image/muon/__init__.py | 9 +++------ 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/ctapipe/image/__init__.py b/ctapipe/image/__init__.py index 3f8f32fc6d6..61799ac01a5 100644 --- a/ctapipe/image/__init__.py +++ b/ctapipe/image/__init__.py @@ -42,6 +42,7 @@ ) from .muon import ( MuonIntensityFitter, + MuonProcessor, MuonRingFitter, intensity_ratio_inside_ring, kundu_chaudhuri_circle_fit, @@ -93,6 +94,7 @@ "chi_squared", "MuonIntensityFitter", "MuonRingFitter", + "MuonProcessor", "kundu_chaudhuri_circle_fit", "mean_squared_error", "intensity_ratio_inside_ring", diff --git a/ctapipe/image/muon/__init__.py b/ctapipe/image/muon/__init__.py index f7025eb10a3..4d35282377c 100644 --- a/ctapipe/image/muon/__init__.py +++ b/ctapipe/image/muon/__init__.py @@ -5,17 +5,14 @@ ring_containment, ) from .fitting import kundu_chaudhuri_circle_fit -from .intensity_fitter import MuonIntensityFitter -from .processor import MuonProcessor -from .ring_fitter import MuonRingFitter +from .intensity_fitter import MuonIntensityFitter # noqa: F401 +from .processor import MuonProcessor # noqa: F401 +from .ring_fitter import MuonRingFitter # noqa: F401 __all__ = [ - "MuonIntensityFitter", - "MuonRingFitter", "kundu_chaudhuri_circle_fit", "mean_squared_error", "intensity_ratio_inside_ring", "ring_completeness", "ring_containment", - "MuonProcessor", ] From c0dc668f942fc6c13cf114ca0239b39460118904 Mon Sep 17 00:00:00 2001 From: Maximilian Linhoff Date: Mon, 17 Jul 2023 11:46:44 +0200 Subject: [PATCH 25/37] Fix broken html syntax in Component.__repr_html__ --- ctapipe/core/component.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ctapipe/core/component.py b/ctapipe/core/component.py index caee11edef7..cbfc05b2584 100644 --- a/ctapipe/core/component.py +++ b/ctapipe/core/component.py @@ -233,7 +233,7 @@ def _repr_html_(self): or "Undocumented" ) lines = [ - "
", + '
', f"{name}", f"

{docstring}

", "", From 2f16d2302afdae080bcb9d272b3b47d60dc01750 Mon Sep 17 00:00:00 2001 From: Maximilian Linhoff Date: Mon, 17 Jul 2023 11:47:17 +0200 Subject: [PATCH 26/37] Clear notebook outputs --- docs/examples/Tools.ipynb | 8422 +------------------------------------ 1 file changed, 57 insertions(+), 8365 deletions(-) diff --git a/docs/examples/Tools.ipynb b/docs/examples/Tools.ipynb index 7f9322406da..02eb2b8f3c1 100644 --- a/docs/examples/Tools.ipynb +++ b/docs/examples/Tools.ipynb @@ -9,7 +9,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -33,7 +33,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -58,7 +58,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -113,95 +113,18 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
\n", - "MyComponent\n", - "

\n", - "

A Component that does stuff

\n", - "
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value-1Value to use (default: -1)
\n", - "
" - ], - "text/plain": [ - "<__main__.MyComponent at 0x7fa1066e5eb0>" - ] - }, - "execution_count": 4, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "MyComponent()" ] }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "Outfile was changed to '{'name': 'outfile', 'old': None, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.foo'), 'owner': <__main__.AdvancedComponent object at 0x7fa105f4fe20>, 'type': 'change'}'\n" - ] - }, - { - "data": { - "text/html": [ - "
\n", - "AdvancedComponent\n", - "

\n", - "

An advanced technique

\n", - "
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\n", - "\n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - "\n", - " \n", - "
infile/home/aknierim/dev/ctapipe/docs/examples/test.fooinput file name (default: traitlets.Undefined)
outfile/home/aknierim/dev/ctapipe/docs/examples/out.foooutput file name (default: traitlets.Undefined)
value1-1Value to use (default: -1)
\n", - "
" - ], - "text/plain": [ - "<__main__.AdvancedComponent at 0x7fa105f4fe20>" - ] - }, - "execution_count": 5, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "AdvancedComponent(infile=\"test.foo\", outfile=\"out.foo\")" ] @@ -215,26 +138,9 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Subarray : MonteCarloArray\n", - "Num Tels : 180\n", - "Footprint: 4.92 km2\n", - "\n", - " Type Count Tel IDs \n", - "----------------- ----- ---------------\n", - " SST_ASTRI_CHEC 120 30-99,131-180 \n", - " LST_LST_LSTCam 4 1-4 \n", - "MST_MST_NectarCam 28 100-124,128-130\n", - " MST_MST_FlashCam 28 5-29,125-127 \n" - ] - } - ], + "outputs": [], "source": [ "from ctapipe.instrument import SubarrayDescription, TelescopeDescription\n", "\n", @@ -244,41 +150,9 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
\n", - "TelescopeWiseComponent\n", - "

\n", - "

a component that contains parameters that are per-telescope configurable

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param[('type', '*', 5.0)]Something configurable with telescope patterns. (default: traitlets.Undefined)
\n", - "
" - ], - "text/plain": [ - "<__main__.TelescopeWiseComponent at 0x7fa1704b9280>" - ] - }, - "execution_count": 7, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "TelescopeWiseComponent(subarray=subarray)" ] @@ -312,7 +186,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -370,128 +244,9 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "MyTool\n", - "

\n", - "

do some things and stuff

\n", - "
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config_files[] (default: traitlets.Undefined)
iterations5Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format[%(name)s]%(highlevel)s %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level30Set the log level by value or name. (default: 30)
logging_config{}\n", - " Configure additional log handlers.\n", - "\n", - " The default stderr logs handler is configured by the\n", - " log_level, log_datefmt and log_format settings.\n", - "\n", - " This configuration can be used to configure additional handlers\n", - " (e.g. to output the log to a file) or for finer control over the\n", - " default handlers.\n", - "\n", - " If provided this should be a logging configuration dictionary, for\n", - " more information see:\n", - " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", - "\n", - " This dictionary is merged with the base logging configuration which\n", - " defines the following:\n", - "\n", - " * A logging formatter intended for interactive use called\n", - " ``console``.\n", - " * A logging handler that writes to stderr called\n", - " ``console`` which uses the formatter ``console``.\n", - " * A logger with the name of this application set to ``DEBUG``\n", - " level.\n", - "\n", - " This example adds a new handler that writes to a file:\n", - "\n", - " .. code-block:: python\n", - "\n", - " c.Application.logging_config = {\n", - " 'handlers': {\n", - " 'file': {\n", - " 'class': 'logging.FileHandler',\n", - " 'level': 'DEBUG',\n", - " 'filename': '',\n", - " }\n", - " },\n", - " 'loggers': {\n", - " '': {\n", - " 'level': 'DEBUG',\n", - " # NOTE: if you don't list the default \"console\"\n", - " # handler here then it will be disabled\n", - " 'handlers': ['console', 'file'],\n", - " },\n", - " }\n", - " }\n", - "\n", - " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
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Components:\n", - "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", - "

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" - ], - "text/plain": [ - "<__main__.MyTool at 0x7fa170490cd0>" - ] - }, - "execution_count": 9, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool = MyTool()\n", "tool" @@ -499,78 +254,9 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "do some things and stuff\n", - "\n", - "Options\n", - "=======\n", - "The options below are convenience aliases to configurable class-options,\n", - "as listed in the \"Equivalent to\" description-line of the aliases.\n", - "To see all configurable class-options for some , use:\n", - " --help-all\n", - "\n", - "-q, --quiet\n", - " Disable console logging.\n", - " Equivalent to: [--Tool.quiet=True]\n", - "-v, --verbose\n", - " Set log level to DEBUG\n", - " Equivalent to: [--Tool.log_level=DEBUG]\n", - "--overwrite\n", - " Overwrite existing output files without asking\n", - " Equivalent to: [--Tool.overwrite=True]\n", - "--debug\n", - " Set log-level to debug, for the most verbose logging.\n", - " Equivalent to: [--Application.log_level=10]\n", - "--show-config\n", - " Show the application's configuration (human-readable format)\n", - " Equivalent to: [--Application.show_config=True]\n", - "--show-config-json\n", - " Show the application's configuration (json format)\n", - " Equivalent to: [--Application.show_config_json=True]\n", - "-c, --config=...\n", - " Default: []\n", - " Equivalent to: [--Tool.config_files]\n", - "--log-level=\n", - " Set the log level by value or name.\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 30\n", - " Equivalent to: [--Tool.log_level]\n", - "-l, --log-file=\n", - " Filename for the log\n", - " Default: None\n", - " Equivalent to: [--Tool.log_file]\n", - "--log-file-level=\n", - " Logging Level for File Logging\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 'INFO'\n", - " Equivalent to: [--Tool.log_file_level]\n", - "--provenance-log=\n", - " Default: traitlets.Undefined\n", - " Equivalent to: [--Tool.provenance_log]\n", - "--infile=\n", - " input file name\n", - " Default: traitlets.Undefined\n", - " Equivalent to: [--AdvancedComponent.infile]\n", - "--outfile=\n", - " output file name\n", - " Default: traitlets.Undefined\n", - " Equivalent to: [--AdvancedComponent.outfile]\n", - "--iterations=\n", - " Number of times to run\n", - " Default: 5\n", - " Equivalent to: [--MyTool.iterations]\n", - "\n", - "To see all available configurables, use `--help-all`.\n", - "\n" - ] - } - ], + "outputs": [], "source": [ "tool.print_help()" ] @@ -584,322 +270,9 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "do some things and stuff\n", - "\n", - "Options\n", - "=======\n", - "The options below are convenience aliases to configurable class-options,\n", - "as listed in the \"Equivalent to\" description-line of the aliases.\n", - "To see all configurable class-options for some , use:\n", - " --help-all\n", - "\n", - "-q, --quiet\n", - " Disable console logging.\n", - " Equivalent to: [--Tool.quiet=True]\n", - "-v, --verbose\n", - " Set log level to DEBUG\n", - " Equivalent to: [--Tool.log_level=DEBUG]\n", - "--overwrite\n", - " Overwrite existing output files without asking\n", - " Equivalent to: [--Tool.overwrite=True]\n", - "--debug\n", - " Set log-level to debug, for the most verbose logging.\n", - " Equivalent to: [--Application.log_level=10]\n", - "--show-config\n", - " Show the application's configuration (human-readable format)\n", - " Equivalent to: [--Application.show_config=True]\n", - "--show-config-json\n", - " Show the application's configuration (json format)\n", - " Equivalent to: [--Application.show_config_json=True]\n", - "-c, --config=...\n", - " Default: []\n", - " Equivalent to: [--Tool.config_files]\n", - "--log-level=\n", - " Set the log level by value or name.\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 30\n", - " Equivalent to: [--Tool.log_level]\n", - "-l, --log-file=\n", - " Filename for the log\n", - " Default: None\n", - " Equivalent to: [--Tool.log_file]\n", - "--log-file-level=\n", - " Logging Level for File Logging\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 'INFO'\n", - " Equivalent to: [--Tool.log_file_level]\n", - "--provenance-log=\n", - " Default: traitlets.Undefined\n", - " Equivalent to: [--Tool.provenance_log]\n", - "--infile=\n", - " input file name\n", - " Default: traitlets.Undefined\n", - " Equivalent to: [--AdvancedComponent.infile]\n", - "--outfile=\n", - " output file name\n", - " Default: traitlets.Undefined\n", - " Equivalent to: [--AdvancedComponent.outfile]\n", - "--iterations=\n", - " Number of times to run\n", - " Default: 5\n", - " Equivalent to: [--MyTool.iterations]\n", - "\n", - "Class options\n", - "=============\n", - "The command-line option below sets the respective configurable class-parameter:\n", - " --Class.parameter=value\n", - "This line is evaluated in Python, so simple expressions are allowed.\n", - "For instance, to set `C.a=[0,1,2]`, you may type this:\n", - " --C.a='range(3)'\n", - "\n", - "Application(SingletonConfigurable) options\n", - "------------------------------------------\n", - "--Application.log_datefmt=\n", - " The date format used by logging formatters for %(asctime)s\n", - " Default: '%Y-%m-%d %H:%M:%S'\n", - "--Application.log_format=\n", - " The Logging format template\n", - " Default: '[%(name)s]%(highlevel)s %(message)s'\n", - "--Application.log_level=\n", - " Set the log level by value or name.\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 30\n", - "--Application.logging_config==...\n", - " Configure additional log handlers.\n", - " The default stderr logs handler is configured by the log_level, log_datefmt\n", - " and log_format settings.\n", - " This configuration can be used to configure additional handlers (e.g. to\n", - " output the log to a file) or for finer control over the default handlers.\n", - " If provided this should be a logging configuration dictionary, for more\n", - " information see:\n", - " https://docs.python.org/3/library/logging.config.html#logging-config-\n", - " dictschema\n", - " This dictionary is merged with the base logging configuration which defines\n", - " the following:\n", - " * A logging formatter intended for interactive use called\n", - " ``console``.\n", - " * A logging handler that writes to stderr called\n", - " ``console`` which uses the formatter ``console``.\n", - " * A logger with the name of this application set to ``DEBUG``\n", - " level.\n", - " This example adds a new handler that writes to a file:\n", - " .. code-block:: python\n", - " c.Application.logging_config = {\n", - " 'handlers': {\n", - " 'file': {\n", - " 'class': 'logging.FileHandler',\n", - " 'level': 'DEBUG',\n", - " 'filename': '',\n", - " }\n", - " },\n", - " 'loggers': {\n", - " '': {\n", - " 'level': 'DEBUG',\n", - " # NOTE: if you don't list the default \"console\"\n", - " # handler here then it will be disabled\n", - " 'handlers': ['console', 'file'],\n", - " },\n", - " }\n", - " }\n", - " Default: {}\n", - "--Application.show_config=\n", - " Instead of starting the Application, dump configuration to stdout\n", - " Default: False\n", - "--Application.show_config_json=\n", - " Instead of starting the Application, dump configuration to stdout (as JSON)\n", - " Default: False\n", - "\n", - "Tool(Application) options\n", - "-------------------------\n", - "--Tool.config_files=...\n", - " Default: []\n", - "--Tool.log_config==...\n", - " Default: {}\n", - "--Tool.log_datefmt=\n", - " The date format used by logging formatters for %(asctime)s\n", - " Default: '%Y-%m-%d %H:%M:%S'\n", - "--Tool.log_file=\n", - " Filename for the log\n", - " Default: None\n", - "--Tool.log_file_level=\n", - " Logging Level for File Logging\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 'INFO'\n", - "--Tool.log_format=\n", - " The Logging format template\n", - " Default: '[%(name)s]%(highlevel)s %(message)s'\n", - "--Tool.log_level=\n", - " Set the log level by value or name.\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 30\n", - "--Tool.logging_config==...\n", - " Configure additional log handlers.\n", - " The default stderr logs handler is configured by the log_level, log_datefmt\n", - " and log_format settings.\n", - " This configuration can be used to configure additional handlers (e.g. to\n", - " output the log to a file) or for finer control over the default handlers.\n", - " If provided this should be a logging configuration dictionary, for more\n", - " information see:\n", - " https://docs.python.org/3/library/logging.config.html#logging-config-\n", - " dictschema\n", - " This dictionary is merged with the base logging configuration which defines\n", - " the following:\n", - " * A logging formatter intended for interactive use called\n", - " ``console``.\n", - " * A logging handler that writes to stderr called\n", - " ``console`` which uses the formatter ``console``.\n", - " * A logger with the name of this application set to ``DEBUG``\n", - " level.\n", - " This example adds a new handler that writes to a file:\n", - " .. code-block:: python\n", - " c.Application.logging_config = {\n", - " 'handlers': {\n", - " 'file': {\n", - " 'class': 'logging.FileHandler',\n", - " 'level': 'DEBUG',\n", - " 'filename': '',\n", - " }\n", - " },\n", - " 'loggers': {\n", - " '': {\n", - " 'level': 'DEBUG',\n", - " # NOTE: if you don't list the default \"console\"\n", - " # handler here then it will be disabled\n", - " 'handlers': ['console', 'file'],\n", - " },\n", - " }\n", - " }\n", - " Default: {}\n", - "--Tool.overwrite=\n", - " Default: False\n", - "--Tool.provenance_log=\n", - " Default: traitlets.Undefined\n", - "--Tool.quiet=\n", - " Default: False\n", - "--Tool.show_config=\n", - " Instead of starting the Application, dump configuration to stdout\n", - " Default: False\n", - "--Tool.show_config_json=\n", - " Instead of starting the Application, dump configuration to stdout (as JSON)\n", - " Default: False\n", - "\n", - "MyTool(Tool) options\n", - "--------------------\n", - "--MyTool.config_files=...\n", - " Default: []\n", - "--MyTool.iterations=\n", - " Number of times to run\n", - " Default: 5\n", - "--MyTool.log_config==...\n", - " Default: {}\n", - "--MyTool.log_datefmt=\n", - " The date format used by logging formatters for %(asctime)s\n", - " Default: '%Y-%m-%d %H:%M:%S'\n", - "--MyTool.log_file=\n", - " Filename for the log\n", - " Default: None\n", - "--MyTool.log_file_level=\n", - " Logging Level for File Logging\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 'INFO'\n", - "--MyTool.log_format=\n", - " The Logging format template\n", - " Default: '[%(name)s]%(highlevel)s %(message)s'\n", - "--MyTool.log_level=\n", - " Set the log level by value or name.\n", - " Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - " Default: 30\n", - "--MyTool.logging_config==...\n", - " Configure additional log handlers.\n", - " The default stderr logs handler is configured by the log_level, log_datefmt\n", - " and log_format settings.\n", - " This configuration can be used to configure additional handlers (e.g. to\n", - " output the log to a file) or for finer control over the default handlers.\n", - " If provided this should be a logging configuration dictionary, for more\n", - " information see:\n", - " https://docs.python.org/3/library/logging.config.html#logging-config-\n", - " dictschema\n", - " This dictionary is merged with the base logging configuration which defines\n", - " the following:\n", - " * A logging formatter intended for interactive use called\n", - " ``console``.\n", - " * A logging handler that writes to stderr called\n", - " ``console`` which uses the formatter ``console``.\n", - " * A logger with the name of this application set to ``DEBUG``\n", - " level.\n", - " This example adds a new handler that writes to a file:\n", - " .. code-block:: python\n", - " c.Application.logging_config = {\n", - " 'handlers': {\n", - " 'file': {\n", - " 'class': 'logging.FileHandler',\n", - " 'level': 'DEBUG',\n", - " 'filename': '',\n", - " }\n", - " },\n", - " 'loggers': {\n", - " '': {\n", - " 'level': 'DEBUG',\n", - " # NOTE: if you don't list the default \"console\"\n", - " # handler here then it will be disabled\n", - " 'handlers': ['console', 'file'],\n", - " },\n", - " }\n", - " }\n", - " Default: {}\n", - "--MyTool.overwrite=\n", - " Default: False\n", - "--MyTool.provenance_log=\n", - " Default: traitlets.Undefined\n", - "--MyTool.quiet=\n", - " Default: False\n", - "--MyTool.show_config=\n", - " Instead of starting the Application, dump configuration to stdout\n", - " Default: False\n", - "--MyTool.show_config_json=\n", - " Instead of starting the Application, dump configuration to stdout (as JSON)\n", - " Default: False\n", - "\n", - "MyComponent(Component) options\n", - "------------------------------\n", - "--MyComponent.value=\n", - " Value to use\n", - " Default: -1\n", - "\n", - "AdvancedComponent(Component) options\n", - "------------------------------------\n", - "--AdvancedComponent.infile=\n", - " input file name\n", - " Default: traitlets.Undefined\n", - "--AdvancedComponent.outfile=\n", - " output file name\n", - " Default: traitlets.Undefined\n", - "--AdvancedComponent.value1=\n", - " Value to use\n", - " Default: -1\n", - "\n", - "SecondaryMyComponent(MyComponent) options\n", - "-----------------------------------------\n", - "--SecondaryMyComponent.value=\n", - " Value to use\n", - " Default: -1\n", - "\n", - "TelescopeWiseComponent(TelescopeComponent) options\n", - "--------------------------------------------------\n", - "--TelescopeWiseComponent.param=...\n", - " Something configurable with telescope patterns.\n", - " Default: [('type', '*', 5.0)]\n", - "\n" - ] - } - ], + "outputs": [], "source": [ "tool.print_help(classes=True)" ] @@ -922,18 +295,9 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "2023-07-03 17:24:52,057 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170483f40>, 'type': 'change'}'\n", - "2023-07-03 17:24:52,559 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n" - ] - } - ], + "outputs": [], "source": [ "try:\n", " tool.run(argv=[\"--infile\", str(GAMMA_FILE), \"--outfile\", \"out.csv\"])\n", @@ -943,27 +307,9 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "2023-07-03 17:24:52,798 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): Loading config from '[]'\n", - "2023-07-03 17:24:52,800 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", - "2023-07-03 17:24:52,802 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170483520>, 'type': 'change'}'\n", - "2023-07-03 17:24:52,803 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 3 iterations...\n", - "2023-07-03 17:24:52,803 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", - "2023-07-03 17:24:52,903 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", - "2023-07-03 17:24:53,005 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", - "2023-07-03 17:24:53,106 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", - "2023-07-03 17:24:53,108 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", - "2023-07-03 17:24:53,114 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", - "2023-07-03 17:24:53,116 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n" - ] - } - ], + "outputs": [], "source": [ "tool.log_format = \"%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s\"\n", "\n", @@ -994,2637 +340,9 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "2023-07-03 17:24:53,149 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Starting: mytool\n", - "2023-07-03 17:24:53,325 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): Loading config from '[]'\n", - "2023-07-03 17:24:53,327 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", - "2023-07-03 17:24:53,329 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486340>, 'type': 'change'}'\n", - "2023-07-03 17:24:53,330 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [], 'iterations': 3, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s', 'log_level': 10, 'logging_config': {}, 'overwrite': False, 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'), 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'value1': -1, 'MyComponent': {'value': -1}}}}\n", - "2023-07-03 17:24:53,330 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 3 iterations...\n", - "2023-07-03 17:24:53,330 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", - "2023-07-03 17:24:53,331 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:53,331 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:53,432 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", - "2023-07-03 17:24:53,433 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:53,435 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:53,537 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", - "2023-07-03 17:24:53,538 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:53,539 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:53,640 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", - "2023-07-03 17:24:53,642 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", - "2023-07-03 17:24:53,649 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", - "2023-07-03 17:24:53,651 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", - "2023-07-03 17:24:53,653 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.write_provenance): Output: \n", - "2023-07-03 17:24:53,668 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.write_provenance): PROVENANCE: '[\n", - " {\n", - " \"activity_name\": \"mytool\",\n", - " \"activity_uuid\": \"c2c31b3c-b5cd-4c46-8581-e0cf17c94af0\",\n", - " \"start\": {\n", - " \"time_utc\": \"2023-07-03T15:24:51.880\"\n", - " },\n", - " \"stop\": {\n", - " \"time_utc\": \"2023-07-03T15:24:52.561\"\n", - " },\n", - " \"system\": {\n", - " \"ctapipe_version\": \"0.19.1.dev27+g062fd966.d20230703\",\n", - " \"ctapipe_resources_version\": \"not installed\",\n", - " \"eventio_version\": \"1.11.0\",\n", - " \"ctapipe_svc_path\": null,\n", - " \"executable\": \"/home/aknierim/.local/conda/envs/cta-dev/bin/python\",\n", - " \"platform\": {\n", - " \"architecture_bits\": \"64bit\",\n", - " \"architecture_linkage\": \"ELF\",\n", - " \"machine\": \"x86_64\",\n", - " \"processor\": \"x86_64\",\n", - " \"node\": \"e5b-dell-09\",\n", - " \"version\": \"#47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jun 21 15:35:31 UTC 2\",\n", - " \"system\": \"Linux\",\n", - " \"release\": \"5.19.0-46-generic\",\n", - " \"libcver\": [\n", - " \"glibc\",\n", - " \"2.35\"\n", - " ],\n", - " \"n_cpus\": 12,\n", - " \"boot_time\": \"2023-07-03T07:18:46.000\"\n", - " },\n", - " \"python\": {\n", - " \"version_string\": \"3.9.16 | packaged by conda-forge | (main, Feb 1 2023, 21:39:03) \\n[GCC 11.3.0]\",\n", - " \"version\": [\n", - " \"3\",\n", - " \"9\",\n", - " \"16\"\n", - " ],\n", - " \"compiler\": \"GCC 11.3.0\",\n", - " \"implementation\": \"CPython\",\n", - " \"packages\": [\n", - " {\n", - " \"name\": \"Babel\",\n", - " \"version\": \"2.12.1\"\n", - " },\n", - " {\n", - " \"name\": \"Cython\",\n", - " \"version\": \"0.29.34\"\n", - " },\n", - " {\n", - " \"name\": \"Jinja2\",\n", - " \"version\": \"3.1.2\"\n", - " },\n", - " {\n", - " \"name\": \"MarkupSafe\",\n", - " \"version\": \"2.1.2\"\n", - " },\n", - " {\n", - " \"name\": \"Pillow\",\n", - " \"version\": \"9.5.0\"\n", - " },\n", - " {\n", - " \"name\": \"PyQt5\",\n", - " \"version\": \"5.15.7\"\n", - " },\n", - " {\n", - " \"name\": \"PyQt5-sip\",\n", - " \"version\": \"12.11.0\"\n", - " },\n", - " {\n", - " \"name\": \"PySocks\",\n", - " \"version\": \"1.7.1\"\n", - " },\n", - " {\n", - " \"name\": \"PyYAML\",\n", - " \"version\": \"6.0\"\n", - " },\n", - " {\n", - " \"name\": \"Pygments\",\n", - " \"version\": \"2.15.1\"\n", - " },\n", - " {\n", - " \"name\": \"QtPy\",\n", - " \"version\": \"2.3.1\"\n", - " },\n", - " {\n", - " \"name\": \"Send2Trash\",\n", - " \"version\": \"1.8.2\"\n", - " },\n", - " {\n", - " \"name\": \"Sphinx\",\n", - " \"version\": \"6.2.1\"\n", - " },\n", - " {\n", - " \"name\": \"accessible-pygments\",\n", - " \"version\": \"0.0.4\"\n", - " },\n", - " {\n", - " \"name\": \"alabaster\",\n", - " \"version\": \"0.7.13\"\n", - " },\n", - " {\n", - " \"name\": \"anyio\",\n", - " \"version\": \"3.6.2\"\n", - " },\n", - " {\n", - " \"name\": \"argon2-cffi\",\n", - " \"version\": \"21.3.0\"\n", - " },\n", - " {\n", - " \"name\": \"argon2-cffi-bindings\",\n", - " \"version\": \"21.2.0\"\n", - " },\n", - " {\n", - " \"name\": \"astropy\",\n", - " \"version\": \"5.2.2\"\n", - " },\n", - " {\n", - " \"name\": \"asttokens\",\n", - " \"version\": \"2.2.1\"\n", - " },\n", - " {\n", - " \"name\": \"async-lru\",\n", - " \"version\": \"2.0.2\"\n", - " },\n", - " {\n", - " \"name\": \"attrs\",\n", - " \"version\": \"23.1.0\"\n", - 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" \"LD_LIBRARY_PATH\": null,\n", - " \"DYLD_LIBRARY_PATH\": null,\n", - " \"USER\": \"aknierim\",\n", - " \"HOME\": \"/home/aknierim\",\n", - " \"SHELL\": \"/bin/zsh\"\n", - " },\n", - " \"arguments\": [\n", - " \"/home/aknierim/.local/conda/envs/cta-dev/lib/python3.9/site-packages/ipykernel_launcher.py\",\n", - " \"-f\",\n", - " \"/home/aknierim/.local/share/jupyter/runtime/kernel-8df72055-1d05-4a90-8466-961002b0e8ef.json\"\n", - " ],\n", - " \"start_time_utc\": \"2023-07-03T15:24:53.322\"\n", - " },\n", - " \"input\": [],\n", - " \"output\": [],\n", - " \"config\": {\n", - " \"MyTool\": {\n", - " \"config_files\": [],\n", - " \"iterations\": 3,\n", - " \"log_config\": {},\n", - " \"log_datefmt\": \"%Y-%m-%d %H:%M:%S\",\n", - " \"log_file\": null,\n", - " \"log_file_level\": \"INFO\",\n", - " \"log_format\": \"%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s\",\n", - " \"log_level\": 10,\n", - " \"logging_config\": {},\n", - " \"overwrite\": false,\n", - " \"provenance_log\": \"/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log\",\n", - " \"quiet\": false,\n", - " \"show_config\": false,\n", - " \"show_config_json\": false,\n", - " \"MyComponent\": {\n", - " \"value\": -1\n", - " },\n", - " \"SecondaryMyComponent\": {\n", - " \"value\": -1\n", - " },\n", - " \"TelescopeWiseComponent\": {\n", - " \"param\": [\n", - " [\n", - " \"type\",\n", - " \"*\",\n", - " 5.0\n", - " ]\n", - " ]\n", - " },\n", - " \"AdvancedComponent\": {\n", - " \"infile\": \"/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst\",\n", - " \"outfile\": \"/home/aknierim/dev/ctapipe/docs/examples/out.csv\",\n", - " \"value1\": -1,\n", - " \"MyComponent\": {\n", - " \"value\": -1\n", - " }\n", - " }\n", - " }\n", - " },\n", - " \"status\": \"completed\",\n", - " \"duration_min\": 0.00818333333336696\n", - " }\n", - "]'\n", - "2023-07-03 17:24:53,683 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (application.exit): Exiting application: mytool\n" - ] - } - ], + "outputs": [], "source": [ "try:\n", " tool.run(\n", @@ -3650,19 +368,9 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "2023-07-03 17:24:53,720 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Starting: mytool\n", - "2023-07-03 17:24:53,931 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486880>, 'type': 'change'}'\n", - "2023-07-03 17:24:54,032 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n" - ] - } - ], + "outputs": [], "source": [ "tool.iterations = 1\n", "tool.log_level = 0\n", @@ -3682,17 +390,9 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "bad value: The 'iterations' trait of a MyTool instance expected an int, not the str 'badval'.\n" - ] - } - ], + "outputs": [], "source": [ "try:\n", " tool.iterations = \"badval\"\n", @@ -3711,17 +411,9 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "2023-07-03 17:24:54,141 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'), 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/Another.txt'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486880>, 'type': 'change'}'\n" - ] - } - ], + "outputs": [], "source": [ "tool.advanced.outfile = \"Another.txt\"" ] @@ -3742,7 +434,7 @@ }, { "cell_type": "code", - "execution_count": 18, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -3751,4382 +443,9 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "2023-07-03 17:24:54,332 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.initialize): ctapipe version 0.19.1.dev27+g062fd966.d20230703\n", - "2023-07-03 17:24:54,334 \u001b[1;33mWARNING\u001b[0m [__main__.mytool.AdvancedComponent] (2562530776.on_outfile_changed): Outfile was changed to '{'name': 'outfile', 'old': traitlets.Undefined, 'new': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/foo.txt'), 'owner': <__main__.AdvancedComponent object at 0x7fa170486e20>, 'type': 'change'}'\n", - "2023-07-03 17:24:54,335 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (tool.run): CONFIG: {'MyTool': {'config_files': [PosixPath('/home/aknierim/dev/ctapipe/docs/examples/Tools.json')], 'iterations': 5, 'log_config': {}, 'log_datefmt': '%Y-%m-%d %H:%M:%S', 'log_file': None, 'log_file_level': 'INFO', 'log_format': '[%(name)s]%(highlevel)s %(message)s', 'log_level': 10, 'logging_config': {}, 'overwrite': False, 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'), 'quiet': False, 'show_config': False, 'show_config_json': False, 'MyComponent': {'value': -1}, 'SecondaryMyComponent': {'value': -1}, 'TelescopeWiseComponent': {'param': [('type', '*', 5.0)]}, 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/something.txt'), 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/foo.txt'), 'value1': -1, 'MyComponent': {'value': -1}}}}\n", - "2023-07-03 17:24:54,336 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): Performing 5 iterations...\n", - "2023-07-03 17:24:54,336 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 0\n", - "2023-07-03 17:24:54,336 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,337 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,437 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 1\n", - "2023-07-03 17:24:54,439 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,441 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,542 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 2\n", - "2023-07-03 17:24:54,543 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,543 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,644 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 3\n", - "2023-07-03 17:24:54,645 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,647 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,748 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (462504653.start): ITERATION 4\n", - "2023-07-03 17:24:54,749 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.MyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,749 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool.SecondaryMyComponent] (2562530776.do_thing): Did thing\n", - "2023-07-03 17:24:54,850 \u001b[1;33mWARNING\u001b[0m [__main__.mytool] (462504653.finish): Shutting down.\n", - "2023-07-03 17:24:54,852 \u001b[1;32mINFO\u001b[0m [__main__.mytool] (tool.run): Finished: mytool\n", - 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" \"log_format\": \"[%(name)s]%(highlevel)s %(message)s\",\n", - " \"log_level\": 10,\n", - " \"logging_config\": {},\n", - " \"overwrite\": false,\n", - " \"provenance_log\": \"/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log\",\n", - " \"quiet\": false,\n", - " \"show_config\": false,\n", - " \"show_config_json\": false,\n", - " \"MyComponent\": {\n", - " \"value\": -1\n", - " },\n", - " \"SecondaryMyComponent\": {\n", - " \"value\": -1\n", - " },\n", - " \"TelescopeWiseComponent\": {\n", - " \"param\": [\n", - " [\n", - " \"type\",\n", - " \"*\",\n", - " 5.0\n", - " ]\n", - " ]\n", - " },\n", - " \"AdvancedComponent\": {\n", - " \"infile\": \"/home/aknierim/dev/ctapipe/docs/examples/something.txt\",\n", - " \"outfile\": \"/home/aknierim/dev/ctapipe/docs/examples/foo.txt\",\n", - " \"value1\": -1,\n", - " \"MyComponent\": {\n", - " \"value\": -1\n", - " }\n", - " }\n", - " }\n", - " },\n", - " \"status\": \"completed\",\n", - " \"duration_min\": 0.01166666666650329\n", - " }\n", - "]'\n", - "2023-07-03 17:24:54,902 \u001b[1;34mDEBUG\u001b[0m [__main__.mytool] (application.exit): Exiting application: mytool\n" - ] - } - ], + "outputs": [], "source": [ "try:\n", " tool2.run(argv=[\"--config\", \"Tools.json\"])\n", @@ -8136,61 +455,34 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "/home/aknierim/dev/ctapipe/docs/examples/something.txt\n" - ] - } - ], + "outputs": [], "source": [ "print(tool2.advanced.infile)" ] }, { "cell_type": "code", - "execution_count": 21, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "{'MyTool': {'config_files': ['Tools.json'], 'log_level': 'DEBUG'}, 'AdvancedComponent': {'infile': 'something.txt', 'outfile': 'foo.txt'}}\n" - ] - } - ], + "outputs": [], "source": [ "print(tool2.config)" ] }, { "cell_type": "code", - "execution_count": 22, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "True" - ] - }, - "execution_count": 22, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool2.is_setup" ] }, { "cell_type": "code", - "execution_count": 23, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -8199,27 +491,16 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "False" - ] - }, - "execution_count": 24, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool3.is_setup" ] }, { "cell_type": "code", - "execution_count": 25, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -8228,283 +509,27 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "False" - ] - }, - "execution_count": 26, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool3.is_setup" ] }, { "cell_type": "code", - "execution_count": 27, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "MyTool\n", - "

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overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
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config_files[] (default: traitlets.Undefined)
iterations1Number of times to run (default: 5)
log_config{} (default: traitlets.Undefined)
log_datefmt%Y-%m-%d %H:%M:%SThe date format used by logging formatters for %(asctime)s (default: %Y-%m-%d %H:%M:%S)
log_fileNoneFilename for the log (default: None)
log_file_levelINFOLogging Level for File Logging (default: INFO)
log_format%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)sThe Logging format template (default: [%(name)s]%(highlevel)s %(message)s)
log_level0Set the log level by value or name. (default: 30)
logging_config{}\n", - " Configure additional log handlers.\n", - "\n", - " The default stderr logs handler is configured by the\n", - " log_level, log_datefmt and log_format settings.\n", - "\n", - " This configuration can be used to configure additional handlers\n", - " (e.g. to output the log to a file) or for finer control over the\n", - " default handlers.\n", - "\n", - " If provided this should be a logging configuration dictionary, for\n", - " more information see:\n", - " https://docs.python.org/3/library/logging.config.html#logging-config-dictschema\n", - "\n", - " This dictionary is merged with the base logging configuration which\n", - " defines the following:\n", - "\n", - " * A logging formatter intended for interactive use called\n", - " ``console``.\n", - " * A logging handler that writes to stderr called\n", - " ``console`` which uses the formatter ``console``.\n", - " * A logger with the name of this application set to ``DEBUG``\n", - " level.\n", - "\n", - " This example adds a new handler that writes to a file:\n", - "\n", - " .. code-block:: python\n", - "\n", - " c.Application.logging_config = {\n", - " 'handlers': {\n", - " 'file': {\n", - " 'class': 'logging.FileHandler',\n", - " 'level': 'DEBUG',\n", - " 'filename': '',\n", - " }\n", - " },\n", - " 'loggers': {\n", - " '': {\n", - " 'level': 'DEBUG',\n", - " # NOTE: if you don't list the default \"console\"\n", - " # handler here then it will be disabled\n", - " 'handlers': ['console', 'file'],\n", - " },\n", - " }\n", - " }\n", - "\n", - " (default: traitlets.Undefined)
overwriteFalse (default: False)
provenance_log/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log (default: traitlets.Undefined)
quietFalse (default: False)
show_configFalseInstead of starting the Application, dump configuration to stdout (default: False)
show_config_jsonFalseInstead of starting the Application, dump configuration to stdout (as JSON) (default: False)
\n", - "

Components:\n", - "MyTool, MyComponent, AdvancedComponent, SecondaryMyComponent, TelescopeWiseComponent\n", - "

\n", - "" - ], - "text/plain": [ - "<__main__.MyTool at 0x7fa170490cd0>" - ] - }, - "execution_count": 28, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool.setup()\n", "tool" @@ -8512,41 +537,9 @@ }, { "cell_type": "code", - "execution_count": 29, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
\n", - "SecondaryMyComponent\n", - "

\n", - "

A second component

\n", - "
\n", - "

\n", - "\n", - " \n", - " \n", - " \n", - " \n", - " \n", - " \n", - "\n", - "\n", - "\n", - " \n", - "
value-1Value to use (default: -1)
\n", - "
" - ], - "text/plain": [ - "<__main__.SecondaryMyComponent at 0x7fa1704f4a00>" - ] - }, - "execution_count": 29, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool.comp2" ] @@ -8560,84 +553,18 @@ }, { "cell_type": "code", - "execution_count": 30, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "{'MyTool': {'config_files': [],\n", - " 'iterations': 1,\n", - " 'log_config': {},\n", - " 'log_datefmt': '%Y-%m-%d %H:%M:%S',\n", - " 'log_file': None,\n", - " 'log_file_level': 'INFO',\n", - " 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s',\n", - " 'log_level': 0,\n", - " 'logging_config': {},\n", - " 'overwrite': False,\n", - " 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'),\n", - " 'quiet': False,\n", - " 'show_config': False,\n", - " 'show_config_json': False,\n", - " 'MyComponent': {'value': -1},\n", - " 'SecondaryMyComponent': {'value': -1},\n", - " 'TelescopeWiseComponent': {'param': TelescopePatternList([('type',\n", - " '*',\n", - " 5.0)])},\n", - " 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'),\n", - " 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'),\n", - " 'value1': -1,\n", - " 'MyComponent': {'value': -1}}}}" - ] - }, - "execution_count": 30, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool.get_current_config()" ] }, { "cell_type": "code", - "execution_count": 31, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "{'MyTool': {'config_files': [],\n", - " 'iterations': 12,\n", - " 'log_config': {},\n", - " 'log_datefmt': '%Y-%m-%d %H:%M:%S',\n", - " 'log_file': None,\n", - " 'log_file_level': 'INFO',\n", - " 'log_format': '%(asctime)s : %(levelname)s [%(name)s %(funcName)s] %(message)s',\n", - " 'log_level': 0,\n", - " 'logging_config': {},\n", - " 'overwrite': False,\n", - " 'provenance_log': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/mytool.provenance.log'),\n", - " 'quiet': False,\n", - " 'show_config': False,\n", - " 'show_config_json': False,\n", - " 'MyComponent': {'value': -1},\n", - " 'SecondaryMyComponent': {'value': -1},\n", - " 'TelescopeWiseComponent': {'param': TelescopePatternList([('type',\n", - " '*',\n", - " 5.0)])},\n", - " 'AdvancedComponent': {'infile': PosixPath('/home/aknierim/.cache/ctapipe/cccta-dataserver.in2p3.fr/data/ctapipe-test-data/v1.1.0/gamma_prod5.simtel.zst'),\n", - " 'outfile': PosixPath('/home/aknierim/dev/ctapipe/docs/examples/out.csv'),\n", - " 'value1': -1,\n", - " 'MyComponent': {'value': -1}}}}" - ] - }, - "execution_count": 31, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "tool.iterations = 12\n", "tool.get_current_config()" @@ -8652,244 +579,9 @@ }, { "cell_type": "code", - "execution_count": 32, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "# Configuration file for mytool.\n", - "\n", - "c = get_config() #noqa\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# Application(SingletonConfigurable) configuration\n", - "#------------------------------------------------------------------------------\n", - "## This is an application.\n", - "\n", - "## The date format used by logging formatters for %(asctime)s\n", - "# Default: '%Y-%m-%d %H:%M:%S'\n", - "# c.Application.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", - "\n", - "## The Logging format template\n", - "# Default: '[%(name)s]%(highlevel)s %(message)s'\n", - "# c.Application.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", - "\n", - "## Set the log level by value or name.\n", - "# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - "# Default: 30\n", - "# c.Application.log_level = 30\n", - "\n", - "## Configure additional log handlers.\n", - "# \n", - "# The default stderr logs handler is configured by the log_level, log_datefmt\n", - "# and log_format settings.\n", - "# \n", - "# This configuration can be used to configure additional handlers (e.g. to\n", - "# output the log to a file) or for finer control over the default handlers.\n", - "# \n", - "# If provided this should be a logging configuration dictionary, for more\n", - "# information see:\n", - "# https://docs.python.org/3/library/logging.config.html#logging-config-\n", - "# dictschema\n", - "# \n", - "# This dictionary is merged with the base logging configuration which defines\n", - "# the following:\n", - "# \n", - "# * A logging formatter intended for interactive use called\n", - "# ``console``.\n", - "# * A logging handler that writes to stderr called\n", - "# ``console`` which uses the formatter ``console``.\n", - "# * A logger with the name of this application set to ``DEBUG``\n", - "# level.\n", - "# \n", - "# This example adds a new handler that writes to a file:\n", - "# \n", - "# .. code-block:: python\n", - "# \n", - "# c.Application.logging_config = {\n", - "# 'handlers': {\n", - "# 'file': {\n", - "# 'class': 'logging.FileHandler',\n", - "# 'level': 'DEBUG',\n", - "# 'filename': '',\n", - "# }\n", - "# },\n", - "# 'loggers': {\n", - "# '': {\n", - "# 'level': 'DEBUG',\n", - "# # NOTE: if you don't list the default \"console\"\n", - "# # handler here then it will be disabled\n", - "# 'handlers': ['console', 'file'],\n", - "# },\n", - "# }\n", - "# }\n", - "# Default: {}\n", - "# c.Application.logging_config = {}\n", - "\n", - "## Instead of starting the Application, dump configuration to stdout\n", - "# Default: False\n", - "# c.Application.show_config = False\n", - "\n", - "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", - "# Default: False\n", - "# c.Application.show_config_json = False\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# Tool(Application) configuration\n", - "#------------------------------------------------------------------------------\n", - "## This is an application.\n", - "\n", - "# Default: []\n", - "# c.Tool.config_files = []\n", - "\n", - "# Default: {}\n", - "# c.Tool.log_config = {}\n", - "\n", - "## The date format used by logging formatters for %(asctime)s\n", - "# See also: Application.log_datefmt\n", - "# c.Tool.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", - "\n", - "## Filename for the log\n", - "# Default: None\n", - "# c.Tool.log_file = None\n", - "\n", - "## Logging Level for File Logging\n", - "# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']\n", - "# Default: 'INFO'\n", - "# c.Tool.log_file_level = 'INFO'\n", - "\n", - "## The Logging format template\n", - "# See also: Application.log_format\n", - "# c.Tool.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", - "\n", - "## Set the log level by value or name.\n", - "# See also: Application.log_level\n", - "# c.Tool.log_level = 30\n", - "\n", - "## \n", - "# See also: Application.logging_config\n", - "# c.Tool.logging_config = {}\n", - "\n", - "# Default: False\n", - "# c.Tool.overwrite = False\n", - "\n", - "# Default: traitlets.Undefined\n", - "# c.Tool.provenance_log = traitlets.Undefined\n", - "\n", - "# Default: False\n", - "# c.Tool.quiet = False\n", - "\n", - "## Instead of starting the Application, dump configuration to stdout\n", - "# See also: Application.show_config\n", - "# c.Tool.show_config = False\n", - "\n", - "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", - "# See also: Application.show_config_json\n", - "# c.Tool.show_config_json = False\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# MyTool(Tool) configuration\n", - "#------------------------------------------------------------------------------\n", - "# See also: Tool.config_files\n", - "# c.MyTool.config_files = []\n", - "\n", - "## Number of times to run\n", - "# Default: 5\n", - "# c.MyTool.iterations = 5\n", - "\n", - "# See also: Tool.log_config\n", - "# c.MyTool.log_config = {}\n", - "\n", - "## The date format used by logging formatters for %(asctime)s\n", - "# See also: Application.log_datefmt\n", - "# c.MyTool.log_datefmt = '%Y-%m-%d %H:%M:%S'\n", - "\n", - "## Filename for the log\n", - "# See also: Tool.log_file\n", - "# c.MyTool.log_file = None\n", - "\n", - "## Logging Level for File Logging\n", - "# See also: Tool.log_file_level\n", - "# c.MyTool.log_file_level = 'INFO'\n", - "\n", - "## The Logging format template\n", - "# See also: Application.log_format\n", - "# c.MyTool.log_format = '[%(name)s]%(highlevel)s %(message)s'\n", - "\n", - "## Set the log level by value or name.\n", - "# See also: Application.log_level\n", - "# c.MyTool.log_level = 30\n", - "\n", - "## \n", - "# See also: Application.logging_config\n", - "# c.MyTool.logging_config = {}\n", - "\n", - "# See also: Tool.overwrite\n", - "# c.MyTool.overwrite = False\n", - "\n", - "# See also: Tool.provenance_log\n", - "# c.MyTool.provenance_log = traitlets.Undefined\n", - "\n", - "# See also: Tool.quiet\n", - "# c.MyTool.quiet = False\n", - "\n", - "## Instead of starting the Application, dump configuration to stdout\n", - "# See also: Application.show_config\n", - "# c.MyTool.show_config = False\n", - "\n", - "## Instead of starting the Application, dump configuration to stdout (as JSON)\n", - "# See also: Application.show_config_json\n", - "# c.MyTool.show_config_json = False\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# MyComponent(Component) configuration\n", - "#------------------------------------------------------------------------------\n", - "## A Component that does stuff\n", - "\n", - "## Value to use\n", - "# Default: -1\n", - "# c.MyComponent.value = -1\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# AdvancedComponent(Component) configuration\n", - "#------------------------------------------------------------------------------\n", - "## An advanced technique\n", - "\n", - "## input file name\n", - "# Default: traitlets.Undefined\n", - "# c.AdvancedComponent.infile = traitlets.Undefined\n", - "\n", - "## output file name\n", - "# Default: traitlets.Undefined\n", - "# c.AdvancedComponent.outfile = traitlets.Undefined\n", - "\n", - "## Value to use\n", - "# Default: -1\n", - "# c.AdvancedComponent.value1 = -1\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# SecondaryMyComponent(MyComponent) configuration\n", - "#------------------------------------------------------------------------------\n", - "## A second component\n", - "\n", - "## Value to use\n", - "# See also: MyComponent.value\n", - "# c.SecondaryMyComponent.value = -1\n", - "\n", - "#------------------------------------------------------------------------------\n", - "# TelescopeWiseComponent(TelescopeComponent) configuration\n", - "#------------------------------------------------------------------------------\n", - "## a component that contains parameters that are per-telescope configurable\n", - "\n", - "## Something configurable with telescope patterns.\n", - "# Default: [('type', '*', 5.0)]\n", - "# c.TelescopeWiseComponent.param = [('type', '*', 5.0)]\n", - "\n" - ] - } - ], + "outputs": [], "source": [ "print(tool.generate_config_file())" ] From 4f5f051c1c7137442a35c3496dc0b9c1abaf4013 Mon Sep 17 00:00:00 2001 From: Maximilian Linhoff Date: Mon, 17 Jul 2023 13:05:15 +0200 Subject: [PATCH 27/37] Fix add_css_file call in docs/conf.py --- docs/conf.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 6c41637ed84..8b0c35f29be 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -68,11 +68,11 @@ def setup(app): + app.add_css_file("ctapipe.css") + # fix trait aliases generating doc warnings from ctapipe.core import traits - app.add_css_file("_static/ctapipe.css") - aliases = [ "flag", "observe", From 63b9e63ced2aaa5e01ddc2edb9bc92dc7f9859f0 Mon Sep 17 00:00:00 2001 From: Maximilian Linhoff Date: Mon, 17 Jul 2023 13:05:45 +0200 Subject: [PATCH 28/37] Fix Tool repr_html and add html escaping --- ctapipe/core/component.py | 15 +++++++++------ ctapipe/core/tool.py | 10 +++++++--- 2 files changed, 16 insertions(+), 9 deletions(-) diff --git a/ctapipe/core/component.py b/ctapipe/core/component.py index cbfc05b2584..b3b5b91a733 100644 --- a/ctapipe/core/component.py +++ b/ctapipe/core/component.py @@ -1,4 +1,5 @@ """ Class to handle configuration for algorithms """ +import html import warnings import weakref from abc import ABCMeta @@ -235,7 +236,7 @@ def _repr_html_(self): lines = [ '
', f"{name}", - f"

{docstring}

", + docstring, "", " ", " ", @@ -246,21 +247,23 @@ def _repr_html_(self): ] for key, val in self.get_current_config()[name].items(): htmlval = ( - str(val).replace("/", "/").replace("_", "_") + html.escape(str(val)).replace("/", "/").replace("_", "_") ) # allow breaking at boundary # traits of the current component if key in traits: - thehelp = f"{traits[key].help} (default: {traits[key].default_value})" + thehelp = html.escape( + f"{traits[key].help} (default: {traits[key].default_value})" + ) lines.append(f"") if val != traits[key].default_value: lines.append( - f"" + f'' ) else: - lines.append(f"") + lines.append(f'') lines.append( - f"" + f'' ) lines.append(" ") lines.append("
{key}{htmlval}{htmlval}{htmlval}{htmlval}{thehelp}
{thehelp}
") diff --git a/ctapipe/core/tool.py b/ctapipe/core/tool.py index 5f6744d2c95..5d28c1585a3 100644 --- a/ctapipe/core/tool.py +++ b/ctapipe/core/tool.py @@ -1,4 +1,5 @@ """Classes to handle configurable command-line user interfaces.""" +import html import logging import logging.config import os @@ -495,8 +496,9 @@ def _repr_html_(self): or "Undocumented" ) lines = [ + '
', f"{name}", - f"

{docstring}

", + docstring, "", " ", " ", @@ -507,12 +509,14 @@ def _repr_html_(self): ] for key, val in self.get_current_config()[name].items(): htmlval = ( - str(val).replace("/", "/").replace("_", "_") + html.escape(str(val)).replace("/", "/").replace("_", "_") ) # allow breaking at boundary # traits of the current component if key in traits: - thehelp = f"{traits[key].help} (default: {traits[key].default_value})" + thehelp = html.escape( + f"{traits[key].help} (default: {traits[key].default_value})" + ) lines.append(f"") if val != traits[key].default_value: lines.append( From beb5fadd56f43a708c6f05ba0f2cda321864b590 Mon Sep 17 00:00:00 2001 From: Maximilian Linhoff Date: Mon, 17 Jul 2023 13:09:22 +0200 Subject: [PATCH 29/37] Simplify __init__.py --- ctapipe/calib/camera/__init__.py | 10 ++++------ ctapipe/instrument/camera/__init__.py | 16 ++++++++-------- 2 files changed, 12 insertions(+), 14 deletions(-) diff --git a/ctapipe/calib/camera/__init__.py b/ctapipe/calib/camera/__init__.py index b71a6d469c8..b5b41267892 100644 --- a/ctapipe/calib/camera/__init__.py +++ b/ctapipe/calib/camera/__init__.py @@ -6,9 +6,7 @@ from .calibrator import CameraCalibrator # noqa: F401 from .gainselection import GainSelector # noqa: F401 -# __all__ = [ -# "CameraCalibrator", -# "GainSelector", -# ] - -__all__ = [] +__all__ = [ + # "CameraCalibrator", + # "GainSelector", +] diff --git a/ctapipe/instrument/camera/__init__.py b/ctapipe/instrument/camera/__init__.py index 43a0644f6f9..e64c4e0db10 100644 --- a/ctapipe/instrument/camera/__init__.py +++ b/ctapipe/instrument/camera/__init__.py @@ -2,11 +2,11 @@ from .geometry import CameraGeometry, PixelShape, UnknownPixelShapeWarning # noqa: F401 from .readout import CameraReadout # noqa: F401 -# __all__ = [ -# "CameraDescription", -# "CameraGeometry", -# "PixelShape", -# "UnknownPixelShapeWarning", -# "CameraReadout", -# ] -__all__ = [] +# commented out due to sphinx issue with classes being defined in 3 places +__all__ = [ + # "CameraDescription", + # "CameraGeometry", + # "PixelShape", + # "UnknownPixelShapeWarning", + # "CameraReadout", +] From 02798cb1a13305af15f449cc7f43545b79c6eb44 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Mon, 17 Jul 2023 14:55:52 +0200 Subject: [PATCH 30/37] Remove version switcher from navbar * Remove version switcher since it needs to be updated by hand every time a new version is released * Remove now-obsolete ``docs/_static/switcher.json`` * Remove ``jinja2`` dependency from ``environment.yml`` --- docs/_static/switcher.json | 72 -------------------------------------- docs/conf.py | 32 +---------------- environment.yml | 1 - 3 files changed, 1 insertion(+), 104 deletions(-) delete mode 100644 docs/_static/switcher.json diff --git a/docs/_static/switcher.json b/docs/_static/switcher.json deleted file mode 100644 index 59a6b3a5637..00000000000 --- a/docs/_static/switcher.json +++ /dev/null @@ -1,72 +0,0 @@ -[ - { - "name": "dev", - "version": "latest", - "url": "https://ctapipe.readthedocs.io/en/latest/" - }, - { - "name": "v0.19.2 (stable)", - "version": "stable", - "url": "https://ctapipe.readthedocs.io/en/stable/" - }, - { - "name": "v0.19.3", - "version": "v0.19.3", - "url": "https://ctapipe.readthedocs.io/en/v0.19.3/" - }, - { - "name": "v0.19.2", - "version": "v0.19.2", - "url": "https://ctapipe.readthedocs.io/en/v0.19.2/" - }, - { - "name": "v0.19.1", - "version": "v0.19.1", - "url": "https://ctapipe.readthedocs.io/en/v0.19.1/" - }, - { - "name": "v0.19.0", - "version": "v0.19.0", - "url": "https://ctapipe.readthedocs.io/en/v0.19.0/" - }, - { - "name": "v0.18.1", - "version": "v0.18.1", - "url": "https://ctapipe.readthedocs.io/en/v0.18.1/" - }, - { - "name": "v0.18.0", - "version": "v0.18.0", - "url": "https://ctapipe.readthedocs.io/en/v0.18.0/" - }, - { - "name": "v0.17.0", - "version": "v0.17.0", - "url": "https://ctapipe.readthedocs.io/en/v0.17.0/" - }, - { - "name": "v0.16.0", - "version": "v0.16.0", - "url": "https://ctapipe.readthedocs.io/en/v0.16.0/" - }, - { - "name": "v0.15.0", - "version": "v0.15.0", - "url": "https://ctapipe.readthedocs.io/en/v0.15.0/" - }, - { - "name": "v0.14.0", - "version": "v0.14.0", - "url": "https://ctapipe.readthedocs.io/en/v0.14.0/" - }, - { - "name": "v0.12.0-rtd", - "version": "v0.12.0-rtd", - "url": "https://ctapipe.readthedocs.io/en/v0.12.0-rtd/" - }, - { - "name": "v0.11.0-rtd", - "version": "v0.11.0-rtd", - "url": "https://ctapipe.readthedocs.io/en/v0.11.0-rtd/" - } -] diff --git a/docs/conf.py b/docs/conf.py index 8b0c35f29be..013d99135dc 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -190,32 +190,8 @@ def setup(app): todo_include_todos = True -# -- Version switcher ----------------------------------------------------- - -# Define the json_url for our version switcher. -json_url = "https://ctapipe.readthedocs.io/en/latest/_static/switcher.json" - -# Define the version we use for matching in the version switcher. -version_match = os.environ.get("READTHEDOCS_VERSION") -# If READTHEDOCS_VERSION doesn't exist, we're not on RTD -# If it is an integer, we're in a PR build and the version isn't correct. -if not version_match or version_match.isdigit(): - # For local development, infer the version to match from the package. - release = ctapipe.__version__ - if "dev" in release or "rc" in release: - version_match = "latest" - # We want to keep the relative reference if we are in dev mode - # but we want the whole url if we are effectively in a released version - json_url = "_static/switcher.json" - else: - version_match = release - - # -- Options for HTML output ---------------------------------------------- -# on_rtd is whether we are on readthedocs.org -on_rtd = os.environ.get("READTHEDOCS", None) == "True" - html_theme = "pydata_sphinx_theme" @@ -224,7 +200,6 @@ def setup(app): # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. -# html_theme_options = { "logo": { "image_light": "ctapipe_logo.webp", @@ -233,11 +208,7 @@ def setup(app): }, "github_url": "https://github.com/cta-observatory/ctapipe", "header_links_before_dropdown": 6, - "navbar_start": ["navbar-logo", "version-switcher"], - "switcher": { - "version_match": version_match, - "json_url": json_url, - }, + "navbar_start": ["navbar-logo"], "use_edit_page_button": True, "icon_links": [ { @@ -253,7 +224,6 @@ def setup(app): # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". -# html_static_path = ['_static'] html_static_path = ["_static"] html_context = { "default_mode": "light", diff --git a/environment.yml b/environment.yml index bbc3bad0b47..99abfdd296c 100644 --- a/environment.yml +++ b/environment.yml @@ -48,5 +48,4 @@ dependencies: - zlib - zstandard - eventio>=1.9.1 - - jinja2 - ffmpeg # for making movies in the documentation From a089c49abcb60e6ed9f76a79c306ea69dc3eec0f Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Mon, 17 Jul 2023 15:48:56 +0200 Subject: [PATCH 31/37] Add sidebar to all pages --- docs/conf.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/docs/conf.py b/docs/conf.py index 013d99135dc..8c36fd896ae 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -220,6 +220,10 @@ def setup(app): ], } +html_sidebars = { + "**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"] +} + # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, From 61547d2747afb2513a5e0180a79406cf534f843c Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Mon, 17 Jul 2023 16:00:28 +0200 Subject: [PATCH 32/37] Fix for failed CI/lint --- docs/conf.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 8c36fd896ae..c6121f5717b 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -220,9 +220,7 @@ def setup(app): ], } -html_sidebars = { - "**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"] -} +html_sidebars = {"**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"]} # Add any paths that contain custom static files (such as style sheets) here, From 22d20622ead385fea7d7c08e582f6b91e1f8b42c Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 18 Jul 2023 17:52:05 +0200 Subject: [PATCH 33/37] Move content of caution admonition to announcement banner * Move content of caution admonition block to announcement banner, as this results in a cleaner main page * Remove ``html_sidebars`` for testing purposes --- docs/conf.py | 9 ++++++--- docs/index.rst | 6 ------ 2 files changed, 6 insertions(+), 9 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index c6121f5717b..5110db2d486 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -210,6 +210,7 @@ def setup(app): "header_links_before_dropdown": 6, "navbar_start": ["navbar-logo"], "use_edit_page_button": True, + "icon_links_label": "Quick Links", "icon_links": [ { "name": "CTA Observatory", @@ -218,11 +219,13 @@ def setup(app): "icon": "https://www.cta-observatory.org/wp-content/themes/ctao/favicon.ico", }, ], + "announcement": """ +

ctapipe is not stable yet, so expect large and rapid + changes to structure and functionality as we explore various + design choices before the 1.0 release.

+ """, } -html_sidebars = {"**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"]} - - # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". diff --git a/docs/index.rst b/docs/index.rst index 6485c01d5b3..84dec76af64 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -40,12 +40,6 @@ Prototype CTA Pipeline Framework (``ctapipe``) ``ctapipe`` is a framework for prototyping the low-level data processing algorithms for the Cherenkov Telescope Array. -.. CAUTION:: - This is not yet stable code, so expect large and rapid changes to - structure and functionality as we explore various design choices before - the 1.0 release. - - .. _ctapipe_docs: .. toctree:: From 2a6b6edb72df2c7bfb9ff519421ba714624d7baf Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 18 Jul 2023 18:34:37 +0200 Subject: [PATCH 34/37] Add sphinx conf path to .readthedocs.yml --- .readthedocs.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.readthedocs.yml b/.readthedocs.yml index 98b2982554b..ca08d556fa9 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -8,6 +8,9 @@ build: tools: python: "3.8" +sphinx: + configuration: docs/conf.py + python: install: - method: pip From 854a84e6aa38d875f98de8e0bd99c172cb5d3f9b Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Tue, 18 Jul 2023 18:51:17 +0200 Subject: [PATCH 35/37] Add sidebars again At least we have a version switcher for now --- .readthedocs.yml | 3 --- docs/conf.py | 2 ++ 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/.readthedocs.yml b/.readthedocs.yml index ca08d556fa9..98b2982554b 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -8,9 +8,6 @@ build: tools: python: "3.8" -sphinx: - configuration: docs/conf.py - python: install: - method: pip diff --git a/docs/conf.py b/docs/conf.py index 5110db2d486..3c493c6920d 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -226,6 +226,8 @@ def setup(app): """, } +html_sidebars = {"**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"]} + # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". From c782ba0303356013abd88680ccdf386b502234f1 Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Wed, 19 Jul 2023 14:17:23 +0200 Subject: [PATCH 36/37] Add navbar version switcher --- docs/_static/switcher.json | 72 ++++++++++++++++++++++++++++++++++++++ docs/conf.py | 28 +++++++++++++-- 2 files changed, 97 insertions(+), 3 deletions(-) create mode 100644 docs/_static/switcher.json diff --git a/docs/_static/switcher.json b/docs/_static/switcher.json new file mode 100644 index 00000000000..59a6b3a5637 --- /dev/null +++ b/docs/_static/switcher.json @@ -0,0 +1,72 @@ +[ + { + "name": "dev", + "version": "latest", + "url": "https://ctapipe.readthedocs.io/en/latest/" + }, + { + "name": "v0.19.2 (stable)", + "version": "stable", + "url": "https://ctapipe.readthedocs.io/en/stable/" + }, + { + "name": "v0.19.3", + "version": "v0.19.3", + "url": "https://ctapipe.readthedocs.io/en/v0.19.3/" + }, + { + "name": "v0.19.2", + "version": "v0.19.2", + "url": "https://ctapipe.readthedocs.io/en/v0.19.2/" + }, + { + "name": "v0.19.1", + "version": "v0.19.1", + "url": "https://ctapipe.readthedocs.io/en/v0.19.1/" + }, + { + "name": "v0.19.0", + "version": "v0.19.0", + "url": "https://ctapipe.readthedocs.io/en/v0.19.0/" + }, + { + "name": "v0.18.1", + "version": "v0.18.1", + "url": "https://ctapipe.readthedocs.io/en/v0.18.1/" + }, + { + "name": "v0.18.0", + "version": "v0.18.0", + "url": "https://ctapipe.readthedocs.io/en/v0.18.0/" + }, + { + "name": "v0.17.0", + "version": "v0.17.0", + "url": "https://ctapipe.readthedocs.io/en/v0.17.0/" + }, + { + "name": "v0.16.0", + "version": "v0.16.0", + "url": "https://ctapipe.readthedocs.io/en/v0.16.0/" + }, + { + "name": "v0.15.0", + "version": "v0.15.0", + "url": "https://ctapipe.readthedocs.io/en/v0.15.0/" + }, + { + "name": "v0.14.0", + "version": "v0.14.0", + "url": "https://ctapipe.readthedocs.io/en/v0.14.0/" + }, + { + "name": "v0.12.0-rtd", + "version": "v0.12.0-rtd", + "url": "https://ctapipe.readthedocs.io/en/v0.12.0-rtd/" + }, + { + "name": "v0.11.0-rtd", + "version": "v0.11.0-rtd", + "url": "https://ctapipe.readthedocs.io/en/v0.11.0-rtd/" + } +] diff --git a/docs/conf.py b/docs/conf.py index 3c493c6920d..4c228dc4886 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -190,6 +190,26 @@ def setup(app): todo_include_todos = True +# -- Version switcher ----------------------------------------------------- + +# Define the json_url for our version switcher. +json_url = "https://ctapipe.readthedocs.io/en/latest/_static/switcher.json" + +# Define the version we use for matching in the version switcher. +version_match = os.environ.get("READTHEDOCS_VERSION") +# If READTHEDOCS_VERSION doesn't exist, we're not on RTD +# If it is an integer, we're in a PR build and the version isn't correct. +if not version_match or version_match.isdigit(): + # For local development, infer the version to match from the package. + if "dev" in release or "rc" in release: + version_match = "latest" + # We want to keep the relative reference if we are in dev mode + # but we want the whole url if we are effectively in a released version + json_url = "_static/switcher.json" + else: + version_match = release + + # -- Options for HTML output ---------------------------------------------- html_theme = "pydata_sphinx_theme" @@ -208,7 +228,11 @@ def setup(app): }, "github_url": "https://github.com/cta-observatory/ctapipe", "header_links_before_dropdown": 6, - "navbar_start": ["navbar-logo"], + "navbar_start": ["navbar-logo", "version-switcher"], + "switcher": { + "version_match": version_match, + "json_url": json_url, + }, "use_edit_page_button": True, "icon_links_label": "Quick Links", "icon_links": [ @@ -226,8 +250,6 @@ def setup(app): """, } -html_sidebars = {"**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"]} - # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". From 05cc382a78bf7717e175deb0904928aee4b4ba1f Mon Sep 17 00:00:00 2001 From: Anno Knierim Date: Wed, 19 Jul 2023 15:41:28 +0200 Subject: [PATCH 37/37] Fix versions in switcher.json * Stable is now called stable (without version tag) * Add colors to stable and dev versions in switcher --- docs/_static/ctapipe.css | 22 +++++++++++++++++++++- docs/_static/switcher.json | 2 +- 2 files changed, 22 insertions(+), 2 deletions(-) diff --git a/docs/_static/ctapipe.css b/docs/_static/ctapipe.css index 243e4af60cd..30483b997f2 100644 --- a/docs/_static/ctapipe.css +++ b/docs/_static/ctapipe.css @@ -12,6 +12,27 @@ } } +.version-switcher__container a[data-version-name*="stable"] { + background-color: #E9F6EC; + color: #28A745; +} + +.version-switcher__container a[data-version-name*="dev"] { + background-color: #FDF4EB; + color: #EE9040; +} + +html[data-theme="dark"] .version-switcher__container a[data-version-name*="stable"] { + background-color: #222924; + color: #28A745; +} + +html[data-theme="dark"] .version-switcher__container a[data-version-name*="dev"] { + background-color: #332A21; + color: #EE9040; +} + + /* sphinx-design */ .sd-card { border-radius: 5px; @@ -44,4 +65,3 @@ html[data-theme="dark"] .sd-shadow-sm { --sd-color-shadow: #6e6e6e; } - diff --git a/docs/_static/switcher.json b/docs/_static/switcher.json index 59a6b3a5637..f2c980b19f7 100644 --- a/docs/_static/switcher.json +++ b/docs/_static/switcher.json @@ -5,7 +5,7 @@ "url": "https://ctapipe.readthedocs.io/en/latest/" }, { - "name": "v0.19.2 (stable)", + "name": "stable", "version": "stable", "url": "https://ctapipe.readthedocs.io/en/stable/" },
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version switcher --- docs/_static/switcher.json | 72 + docs/conf.py | 103 +- docs/ctapipe_api/calib/index.rst | 1 + docs/ctapipe_api/calib/index_camera.rst | 3 +- docs/examples/Tools.ipynb | 8434 ++++++++++++++++++++++- docs/getting_started/index.rst | 12 +- docs/index.rst | 155 +- docs/versions.json | 12 + 8 files changed, 8690 insertions(+), 102 deletions(-) create mode 100644 docs/_static/switcher.json create mode 100644 docs/versions.json diff --git a/docs/_static/switcher.json b/docs/_static/switcher.json new file mode 100644 index 00000000000..59a6b3a5637 --- /dev/null +++ b/docs/_static/switcher.json @@ -0,0 +1,72 @@ +[ + { + "name": "dev", + "version": "latest", + "url": "https://ctapipe.readthedocs.io/en/latest/" + }, + { + "name": "v0.19.2 (stable)", + "version": "stable", + "url": "https://ctapipe.readthedocs.io/en/stable/" + }, + { + "name": "v0.19.3", + "version": "v0.19.3", + "url": "https://ctapipe.readthedocs.io/en/v0.19.3/" + }, + { + "name": "v0.19.2", + "version": "v0.19.2", + "url": "https://ctapipe.readthedocs.io/en/v0.19.2/" + }, + { + "name": "v0.19.1", + "version": "v0.19.1", + "url": "https://ctapipe.readthedocs.io/en/v0.19.1/" + }, + { + "name": "v0.19.0", + "version": "v0.19.0", + "url": "https://ctapipe.readthedocs.io/en/v0.19.0/" + }, + { + "name": "v0.18.1", + "version": "v0.18.1", + "url": "https://ctapipe.readthedocs.io/en/v0.18.1/" + }, + { + "name": "v0.18.0", + "version": "v0.18.0", + "url": "https://ctapipe.readthedocs.io/en/v0.18.0/" + }, + { + "name": "v0.17.0", + "version": "v0.17.0", + "url": "https://ctapipe.readthedocs.io/en/v0.17.0/" + }, + { + "name": "v0.16.0", + "version": "v0.16.0", + "url": "https://ctapipe.readthedocs.io/en/v0.16.0/" + }, + { + "name": "v0.15.0", + "version": "v0.15.0", + "url": "https://ctapipe.readthedocs.io/en/v0.15.0/" + }, + { + "name": "v0.14.0", + "version": "v0.14.0", + "url": "https://ctapipe.readthedocs.io/en/v0.14.0/" + }, + { + "name": "v0.12.0-rtd", + "version": "v0.12.0-rtd", + "url": "https://ctapipe.readthedocs.io/en/v0.12.0-rtd/" + }, + { + "name": "v0.11.0-rtd", + "version": "v0.11.0-rtd", + "url": "https://ctapipe.readthedocs.io/en/v0.11.0-rtd/" + } +] diff --git a/docs/conf.py b/docs/conf.py index f2cb9a72486..cc5843d1020 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -29,6 +29,7 @@ # Get configuration information from setup.cfg from configparser import ConfigParser +import pydata_sphinx_theme import ctapipe setup_cfg = ConfigParser() @@ -36,6 +37,7 @@ setup_metadata = dict(setup_cfg.items("metadata")) setup_options = dict(setup_cfg.items("options")) + # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. @@ -52,10 +54,13 @@ "nbsphinx", "matplotlib.sphinxext.plot_directive", "numpydoc", + "sphinx_design", "IPython.sphinxext.ipython_console_highlighting", ] + numpydoc_show_class_members = False +# numpydoc_class_members_toctree = False nbsphinx_timeout = 200 # allow max 2 minutes to build each notebook @@ -67,6 +72,8 @@ def setup(app): # fix trait aliases generating doc warnings from ctapipe.core import traits + app.add_css_file("_static/ctapipe.css") + aliases = [ "flag", "observe", @@ -119,7 +126,8 @@ def setup(app): ("py:class", "astropy.coordinates.baseframe.BaseCoordinateFrame"), ("py:class", "astropy.table.table.Table"), ("py:class", "eventio.simtel.simtelfile.SimTelFile"), - ("py:class", "ctapipe.compat.StrEnum"), + ("py:obj", "ctapipe.calib.CameraCalibrator"), # temporary fix to ignore warning + ("py:obj", "ctapipe.calib.GainSelector"), # temporary fix to ignore warning ] # The suffix(es) of source filenames. @@ -182,32 +190,86 @@ def setup(app): # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True + +# -- Version switcher ----------------------------------------------------- + +# Define the json_url for our version switcher. +json_url = "https://ctapipe.readthedocs.io/en/latest/_static/switcher.json" + +# Define the version we use for matching in the version switcher. +version_match = os.environ.get("READTHEDOCS_VERSION") +# If READTHEDOCS_VERSION doesn't exist, we're not on RTD +# If it is an integer, we're in a PR build and the version isn't correct. +if not version_match or version_match.isdigit(): + # For local development, infer the version to match from the package. + release = ctapipe.__version__ + if "dev" in release or "rc" in release: + version_match = "latest" + # We want to keep the relative reference if we are in dev mode + # but we want the whole url if we are effectively in a released version + json_url = "_static/switcher.json" + else: + version_match = release + + # -- Options for HTML output ---------------------------------------------- -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = "default" +# on_rtd is whether we are on readthedocs.org +on_rtd = os.environ.get("READTHEDOCS", None) == "True" + +html_theme = "pydata_sphinx_theme" +# html_theme_path = [pydata_sphinx_theme.__path__] + + +html_favicon = "_static/favicon.ico" # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # -# html_theme_options = {} +html_theme_options = { + "logo": { + "image_light": "ctapipe_logo.webp", + "image_dark": "ctapipe_logo_dark.webp", + "alt_text": "ctapipe", + }, + "github_url": "https://github.com/cta-observatory/ctapipe", + "header_links_before_dropdown": 6, + "navbar_start": ["navbar-logo", "version-switcher"], + "switcher": { + "version_match": version_match, + "json_url": json_url, + }, + "use_edit_page_button": True, + "icon_links": [ + { + "name": "CTA Observatory", + "url": "https://www.cta-observatory.org/", + "type": "url", + "icon": "https://www.cta-observatory.org/wp-content/themes/ctao/favicon.ico" + }, + ], +} + +html_sidebars = { + "**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"], +} + # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". # html_static_path = ['_static'] html_static_path = ["_static"] - html_context = { - "css_files": ["_static/theme_overrides.css"] # override wide tables in RTD theme + "default_mode": "light", + "github_user": "cta-observatory", + "github_repo": "ctapipe", + "github_version": "main", + "doc_path": "docs", } - -html_favicon = "_static/favicon.ico" -# -- Options for HTMLHelp output ------------------------------------------ - +html_css_files = ["ctapipe.css"] +html_file_suffix = ".html" # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". @@ -216,6 +278,7 @@ def setup(app): # Output file base name for HTML help builder. htmlhelp_basename = project + "doc" + # -- Options for LaTeX output --------------------------------------------- latex_elements = { @@ -277,19 +340,3 @@ def setup(app): "iminuit": ("https://iminuit.readthedocs.io/en/latest/", None), "traitlets": ("https://traitlets.readthedocs.io/en/stable/", None), } - -# on_rtd is whether we are on readthedocs.org -on_rtd = os.environ.get("READTHEDOCS", None) == "True" - -if not on_rtd: # only import and set the theme if we're building docs locally - try: - import sphinx_rtd_theme - except ImportError: - raise ImportError( - "It looks like you don't have the sphinx_rtd_theme " - "package installed. This documentation " - "uses the Read The Docs theme, so you must install this " - "first. For example, pip install sphinx_rtd_theme" - ) - html_theme = "sphinx_rtd_theme" - html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] diff --git a/docs/ctapipe_api/calib/index.rst b/docs/ctapipe_api/calib/index.rst index c4decc21eef..28a105b5f61 100644 --- a/docs/ctapipe_api/calib/index.rst +++ b/docs/ctapipe_api/calib/index.rst @@ -46,3 +46,4 @@ Reference/API .. automodapi:: ctapipe.calib :no-inheritance-diagram: + :noindex: diff --git a/docs/ctapipe_api/calib/index_camera.rst b/docs/ctapipe_api/calib/index_camera.rst index d5cea730106..897acf55a82 100644 --- a/docs/ctapipe_api/calib/index_camera.rst +++ b/docs/ctapipe_api/calib/index_camera.rst @@ -19,7 +19,7 @@ CTA Cameras (MC, prototypes and final camera calibration algorithms). CameraCalibrator **************** -The primary class in this module is the `CameraCalibrator`. This class handles +The primary class in this module is the :class:`.CameraCalibrator`. This class handles two data level transition stages for the event: * R1 -> DL0 (:ref:`image_reducers`) @@ -38,6 +38,7 @@ Reference/API ************* .. automodapi:: ctapipe.calib.camera + :no-main-docstr: ------------------------------ diff --git a/docs/examples/Tools.ipynb b/docs/examples/Tools.ipynb index 6b541cc8495..7f9322406da 100644 --- a/docs/examples/Tools.ipynb +++ b/docs/examples/Tools.ipynb @@ -9,7 +9,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 1, "metadata": {}, "outputs": [], "source": [ @@ -33,7 +33,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 2, "metadata": {}, "outputs": [], "source": [ @@ -58,7 +58,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 3, "metadata": {}, "outputs": [], "source": [ @@ -113,18 +113,95 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 4, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "

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version switcher --- docs/_static/switcher.json | 72 + docs/conf.py | 102 +- docs/ctapipe_api/calib/index.rst | 1 + docs/ctapipe_api/calib/index_camera.rst | 3 +- docs/examples/Tools.ipynb | 8434 ++++++++++++++++++++++- docs/getting_started/index.rst | 12 +- docs/index.rst | 155 +- docs/versions.json | 12 + 8 files changed, 8690 insertions(+), 101 deletions(-) create mode 100644 docs/_static/switcher.json create mode 100644 docs/versions.json diff --git a/docs/_static/switcher.json b/docs/_static/switcher.json new file mode 100644 index 00000000000..59a6b3a5637 --- /dev/null +++ b/docs/_static/switcher.json @@ -0,0 +1,72 @@ +[ + { + "name": "dev", + "version": "latest", + "url": "https://ctapipe.readthedocs.io/en/latest/" + }, + { + "name": "v0.19.2 (stable)", + "version": "stable", + "url": "https://ctapipe.readthedocs.io/en/stable/" + }, + { + "name": "v0.19.3", + "version": "v0.19.3", + "url": "https://ctapipe.readthedocs.io/en/v0.19.3/" + }, + { + "name": "v0.19.2", + "version": "v0.19.2", + "url": "https://ctapipe.readthedocs.io/en/v0.19.2/" + }, + { + "name": "v0.19.1", + "version": "v0.19.1", + "url": "https://ctapipe.readthedocs.io/en/v0.19.1/" + }, + { + "name": "v0.19.0", + "version": "v0.19.0", + "url": "https://ctapipe.readthedocs.io/en/v0.19.0/" + }, + { + "name": "v0.18.1", + "version": "v0.18.1", + "url": "https://ctapipe.readthedocs.io/en/v0.18.1/" + }, + { + "name": "v0.18.0", + "version": "v0.18.0", + "url": "https://ctapipe.readthedocs.io/en/v0.18.0/" + }, + { + "name": "v0.17.0", + "version": "v0.17.0", + "url": "https://ctapipe.readthedocs.io/en/v0.17.0/" + }, + { + "name": "v0.16.0", + "version": "v0.16.0", + "url": "https://ctapipe.readthedocs.io/en/v0.16.0/" + }, + { + "name": "v0.15.0", + "version": "v0.15.0", + "url": "https://ctapipe.readthedocs.io/en/v0.15.0/" + }, + { + "name": "v0.14.0", + "version": "v0.14.0", + "url": "https://ctapipe.readthedocs.io/en/v0.14.0/" + }, + { + "name": "v0.12.0-rtd", + "version": "v0.12.0-rtd", + "url": "https://ctapipe.readthedocs.io/en/v0.12.0-rtd/" + }, + { + "name": "v0.11.0-rtd", + "version": "v0.11.0-rtd", + "url": "https://ctapipe.readthedocs.io/en/v0.11.0-rtd/" + } +] diff --git a/docs/conf.py b/docs/conf.py index b848261c4d8..cc5843d1020 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -29,6 +29,7 @@ # Get configuration information from setup.cfg from configparser import ConfigParser +import pydata_sphinx_theme import ctapipe setup_cfg = ConfigParser() @@ -36,6 +37,7 @@ setup_metadata = dict(setup_cfg.items("metadata")) setup_options = dict(setup_cfg.items("options")) + # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. @@ -52,10 +54,13 @@ "nbsphinx", "matplotlib.sphinxext.plot_directive", "numpydoc", + "sphinx_design", "IPython.sphinxext.ipython_console_highlighting", ] + numpydoc_show_class_members = False +# numpydoc_class_members_toctree = False nbsphinx_timeout = 200 # allow max 2 minutes to build each notebook @@ -67,6 +72,8 @@ def setup(app): # fix trait aliases generating doc warnings from ctapipe.core import traits + app.add_css_file("_static/ctapipe.css") + aliases = [ "flag", "observe", @@ -119,6 +126,8 @@ def setup(app): ("py:class", "astropy.coordinates.baseframe.BaseCoordinateFrame"), ("py:class", "astropy.table.table.Table"), ("py:class", "eventio.simtel.simtelfile.SimTelFile"), + ("py:obj", "ctapipe.calib.CameraCalibrator"), # temporary fix to ignore warning + ("py:obj", "ctapipe.calib.GainSelector"), # temporary fix to ignore warning ] # The suffix(es) of source filenames. @@ -181,32 +190,86 @@ def setup(app): # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True + +# -- Version switcher ----------------------------------------------------- + +# Define the json_url for our version switcher. +json_url = "https://ctapipe.readthedocs.io/en/latest/_static/switcher.json" + +# Define the version we use for matching in the version switcher. +version_match = os.environ.get("READTHEDOCS_VERSION") +# If READTHEDOCS_VERSION doesn't exist, we're not on RTD +# If it is an integer, we're in a PR build and the version isn't correct. +if not version_match or version_match.isdigit(): + # For local development, infer the version to match from the package. + release = ctapipe.__version__ + if "dev" in release or "rc" in release: + version_match = "latest" + # We want to keep the relative reference if we are in dev mode + # but we want the whole url if we are effectively in a released version + json_url = "_static/switcher.json" + else: + version_match = release + + # -- Options for HTML output ---------------------------------------------- -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = "default" +# on_rtd is whether we are on readthedocs.org +on_rtd = os.environ.get("READTHEDOCS", None) == "True" + +html_theme = "pydata_sphinx_theme" +# html_theme_path = [pydata_sphinx_theme.__path__] + + +html_favicon = "_static/favicon.ico" # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # -# html_theme_options = {} +html_theme_options = { + "logo": { + "image_light": "ctapipe_logo.webp", + "image_dark": "ctapipe_logo_dark.webp", + "alt_text": "ctapipe", + }, + "github_url": "https://github.com/cta-observatory/ctapipe", + "header_links_before_dropdown": 6, + "navbar_start": ["navbar-logo", "version-switcher"], + "switcher": { + "version_match": version_match, + "json_url": json_url, + }, + "use_edit_page_button": True, + "icon_links": [ + { + "name": "CTA Observatory", + "url": "https://www.cta-observatory.org/", + "type": "url", + "icon": "https://www.cta-observatory.org/wp-content/themes/ctao/favicon.ico" + }, + ], +} + +html_sidebars = { + "**": ["sidebar-nav-bs.html", "sidebar-ethical-ads.html"], +} + # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". # html_static_path = ['_static'] html_static_path = ["_static"] - html_context = { - "css_files": ["_static/theme_overrides.css"] # override wide tables in RTD theme + "default_mode": "light", + "github_user": "cta-observatory", + "github_repo": "ctapipe", + "github_version": "main", + "doc_path": "docs", } - -html_favicon = "_static/favicon.ico" -# -- Options for HTMLHelp output ------------------------------------------ - +html_css_files = ["ctapipe.css"] +html_file_suffix = ".html" # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". @@ -215,6 +278,7 @@ def setup(app): # Output file base name for HTML help builder. htmlhelp_basename = project + "doc" + # -- Options for LaTeX output --------------------------------------------- latex_elements = { @@ -276,19 +340,3 @@ def setup(app): "iminuit": ("https://iminuit.readthedocs.io/en/latest/", None), "traitlets": ("https://traitlets.readthedocs.io/en/stable/", None), } - -# on_rtd is whether we are on readthedocs.org -on_rtd = os.environ.get("READTHEDOCS", None) == "True" - -if not on_rtd: # only import and set the theme if we're building docs locally - try: - import sphinx_rtd_theme - except ImportError: - raise ImportError( - "It looks like you don't have the sphinx_rtd_theme " - "package installed. This documentation " - "uses the Read The Docs theme, so you must install this " - "first. For example, pip install sphinx_rtd_theme" - ) - html_theme = "sphinx_rtd_theme" - html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] diff --git a/docs/ctapipe_api/calib/index.rst b/docs/ctapipe_api/calib/index.rst index c4decc21eef..28a105b5f61 100644 --- a/docs/ctapipe_api/calib/index.rst +++ b/docs/ctapipe_api/calib/index.rst @@ -46,3 +46,4 @@ Reference/API .. automodapi:: ctapipe.calib :no-inheritance-diagram: + :noindex: diff --git a/docs/ctapipe_api/calib/index_camera.rst b/docs/ctapipe_api/calib/index_camera.rst index d5cea730106..897acf55a82 100644 --- a/docs/ctapipe_api/calib/index_camera.rst +++ b/docs/ctapipe_api/calib/index_camera.rst @@ -19,7 +19,7 @@ CTA Cameras (MC, prototypes and final camera calibration algorithms). CameraCalibrator **************** -The primary class in this module is the `CameraCalibrator`. This class handles +The primary class in this module is the :class:`.CameraCalibrator`. This class handles two data level transition stages for the event: * R1 -> DL0 (:ref:`image_reducers`) @@ -38,6 +38,7 @@ Reference/API ************* .. automodapi:: ctapipe.calib.camera + :no-main-docstr: ------------------------------ diff --git a/docs/examples/Tools.ipynb b/docs/examples/Tools.ipynb index 6b541cc8495..7f9322406da 100644 --- a/docs/examples/Tools.ipynb +++ b/docs/examples/Tools.ipynb @@ -9,7 +9,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 1, "metadata": {}, "outputs": [], "source": [ @@ -33,7 +33,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 2, "metadata": {}, "outputs": [], "source": [ @@ -58,7 +58,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 3, "metadata": {}, "outputs": [], "source": [ @@ -113,18 +113,95 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 4, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "