{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":358689512,"defaultBranch":"dev","name":"OpenPedCan-analysis","ownerLogin":"d3b-center","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2021-04-16T18:39:55.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25509062?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1723827264.0","currentOid":""},"activityList":{"items":[{"before":"f9e7d0371f7f76dba6ca7712f97b9b6b9160cb36","after":"2ccf42d1b5ac3e6c2a4f4e39b0d8481f822ca2d4","ref":"refs/heads/rjcorb/update-mb-shh-abridged-output","pushedAt":"2024-08-16T16:56:06.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into 602","shortMessageHtmlLink":"Merge branch 'dev' into 602"}},{"before":"770d497ba2bd5bf77a798575336b75b0836f6a77","after":null,"ref":"refs/heads/subtype_integrate","pushedAt":"2024-08-16T16:54:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"}},{"before":"b300e28f52bc84a45a3da4d133f45e6e567a1999","after":"945dfabd21d1bad0a11396bab4a7128f2cdc2d6b","ref":"refs/heads/dev","pushedAt":"2024-08-16T16:54:21.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge pull request #600 from d3b-center/subtype_integrate\n\nUndo cancer_group manual override for select sample_ID as per OPC_566","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2423099052\" data-permission-text=\"Title is private\" data-url=\"https://github.com/d3b-center/OpenPedCan-analysis/issues/600\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/d3b-center/OpenPedCan-analysis/pull/600/hovercard\" href=\"https://github.com/d3b-center/OpenPedCan-analysis/pull/600\">#600</a> from d3b-center/subtype_integrate"}},{"before":"42392d8d618ade3b58fcaca552f15ff6f7c1aaf5","after":null,"ref":"refs/heads/immune-deconv","pushedAt":"2024-08-16T16:53:49.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"}},{"before":"9138cec42f5c21569b55c5114b0fbb9159ff1ac7","after":"b300e28f52bc84a45a3da4d133f45e6e567a1999","ref":"refs/heads/dev","pushedAt":"2024-08-16T16:53:46.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge pull request #605 from d3b-center/immune-deconv\n\nrerun immune-deconv with v15","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2442181217\" data-permission-text=\"Title is private\" data-url=\"https://github.com/d3b-center/OpenPedCan-analysis/issues/605\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/d3b-center/OpenPedCan-analysis/pull/605/hovercard\" href=\"https://github.com/d3b-center/OpenPedCan-analysis/pull/605\">#605</a> from d3b-center/immune-deconv"}},{"before":"d4dcbab1766224319eed3f715b909f2b62ebb840","after":"42392d8d618ade3b58fcaca552f15ff6f7c1aaf5","ref":"refs/heads/immune-deconv","pushedAt":"2024-08-16T16:52:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"rerun, but comment quantiseq out of the bash script","shortMessageHtmlLink":"rerun, but comment quantiseq out of the bash script"}},{"before":"b13c26be8dba9b299176a467f5e9b31ae30bc01b","after":"d4dcbab1766224319eed3f715b909f2b62ebb840","ref":"refs/heads/immune-deconv","pushedAt":"2024-08-16T14:20:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"add immune deconv back to yaml","shortMessageHtmlLink":"add immune deconv back to yaml"}},{"before":"b5e39f6685f0023a1d5cac959af83886a1b3b066","after":"b13c26be8dba9b299176a467f5e9b31ae30bc01b","ref":"refs/heads/immune-deconv","pushedAt":"2024-08-16T14:19:19.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into 605","shortMessageHtmlLink":"Merge branch 'dev' into 605"}},{"before":"ef791b51c66b33664947ff03d5db5ac2504e4f91","after":"770d497ba2bd5bf77a798575336b75b0836f6a77","ref":"refs/heads/subtype_integrate","pushedAt":"2024-08-16T14:16:52.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into 600","shortMessageHtmlLink":"Merge branch 'dev' into 600"}},{"before":"75aaad68d1cf170a3df695460f1dd8554b15a49e","after":null,"ref":"refs/heads/PB_subtyping","pushedAt":"2024-08-16T14:16:07.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"}},{"before":"a939596e27ef56543e4c9caa9255f0bc4d57a69a","after":"9138cec42f5c21569b55c5114b0fbb9159ff1ac7","ref":"refs/heads/dev","pushedAt":"2024-08-16T14:16:04.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge pull request #601 from d3b-center/PB_subtyping\n\nPreviously missing PB subtypes added","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2423427349\" data-permission-text=\"Title is private\" data-url=\"https://github.com/d3b-center/OpenPedCan-analysis/issues/601\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/d3b-center/OpenPedCan-analysis/pull/601/hovercard\" href=\"https://github.com/d3b-center/OpenPedCan-analysis/pull/601\">#601</a> from d3b-center/PB_subtyping"}},{"before":"638b8f3074274dfa08bc67bd6a9c7a522a90d13d","after":"75aaad68d1cf170a3df695460f1dd8554b15a49e","ref":"refs/heads/PB_subtyping","pushedAt":"2024-08-15T19:37:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"devbyaccident","name":"Chris Blackden","path":"/devbyaccident","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12488263?s=80&v=4"},"commit":{"message":"🧱 Increase size for analysis job","shortMessageHtmlLink":"🧱 Increase size for analysis job"}},{"before":"e710f228aee1d4d147f3998416cd0998a1c40058","after":"ef791b51c66b33664947ff03d5db5ac2504e4f91","ref":"refs/heads/subtype_integrate","pushedAt":"2024-08-15T17:50:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"update pnoc clinical review to capture incorrect patient id assignment","shortMessageHtmlLink":"update pnoc clinical review to capture incorrect patient id assignment"}},{"before":"e681630146971afd224c45ee4ac7fe24b106f373","after":"638b8f3074274dfa08bc67bd6a9c7a522a90d13d","ref":"refs/heads/PB_subtyping","pushedAt":"2024-08-15T17:06:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"fix bug where methyl subtype existed when low conf","shortMessageHtmlLink":"fix bug where methyl subtype existed when low conf"}},{"before":"4caff920cac735b475dfd2f05d7802aa2f56fc19","after":"e681630146971afd224c45ee4ac7fe24b106f373","ref":"refs/heads/PB_subtyping","pushedAt":"2024-08-06T15:19:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sangeetashukla","name":"Sangeeta Shukla","path":"/sangeetashukla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/82055098?s=80&v=4"},"commit":{"message":"Removed additional subtypes per comments on OPC PR601","shortMessageHtmlLink":"Removed additional subtypes per comments on OPC PR601"}},{"before":"c42beddb87faa79a0ef6113dce5fcdefe877c663","after":"f9e7d0371f7f76dba6ca7712f97b9b6b9160cb36","ref":"refs/heads/rjcorb/update-mb-shh-abridged-output","pushedAt":"2024-08-02T15:37:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rjcorb","name":"Ryan Corbett","path":"/rjcorb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16766381?s=80&v=4"},"commit":{"message":"rerun 05 script","shortMessageHtmlLink":"rerun 05 script"}},{"before":"6b09a3ea42cb87c430ce78a445387ba343b735ef","after":"b5e39f6685f0023a1d5cac959af83886a1b3b066","ref":"refs/heads/immune-deconv","pushedAt":"2024-08-02T15:21:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"komalsrathi","name":"Komal Rathi","path":"/komalsrathi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7000615?s=80&v=4"},"commit":{"message":"remove plots","shortMessageHtmlLink":"remove plots"}},{"before":null,"after":"6b09a3ea42cb87c430ce78a445387ba343b735ef","ref":"refs/heads/immune-deconv","pushedAt":"2024-08-01T11:09:23.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"komalsrathi","name":"Komal Rathi","path":"/komalsrathi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7000615?s=80&v=4"},"commit":{"message":"rerun with v15","shortMessageHtmlLink":"rerun with v15"}},{"before":"75d03161bbf84e9146667445bf92f3ad148ff678","after":"758ee1e8f1030cb023bf87d6430e8806dafa6b74","ref":"refs/heads/dna-samples","pushedAt":"2024-07-30T22:46:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"komalsrathi","name":"Komal Rathi","path":"/komalsrathi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7000615?s=80&v=4"},"commit":{"message":"update results","shortMessageHtmlLink":"update results"}},{"before":"ceae5cedfc921f0a3215703e7c13e8659754e1cf","after":"75d03161bbf84e9146667445bf92f3ad148ff678","ref":"refs/heads/dna-samples","pushedAt":"2024-07-30T21:50:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"komalsrathi","name":"Komal Rathi","path":"/komalsrathi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7000615?s=80&v=4"},"commit":{"message":"apply same for WXS preferred","shortMessageHtmlLink":"apply same for WXS preferred"}},{"before":null,"after":"ceae5cedfc921f0a3215703e7c13e8659754e1cf","ref":"refs/heads/dna-samples","pushedAt":"2024-07-30T21:45:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"komalsrathi","name":"Komal Rathi","path":"/komalsrathi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7000615?s=80&v=4"},"commit":{"message":"add Metastatic samples where no other DNA sample is available","shortMessageHtmlLink":"add Metastatic samples where no other DNA sample is available"}},{"before":null,"after":"c42beddb87faa79a0ef6113dce5fcdefe877c663","ref":"refs/heads/rjcorb/update-mb-shh-abridged-output","pushedAt":"2024-07-24T13:51:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"rjcorb","name":"Ryan Corbett","path":"/rjcorb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16766381?s=80&v=4"},"commit":{"message":"rm redundant columns from abridged output","shortMessageHtmlLink":"rm redundant columns from abridged output"}},{"before":"44188b30b090dc993b30d7eb3e4a9552d7aec4eb","after":"a939596e27ef56543e4c9caa9255f0bc4d57a69a","ref":"refs/heads/dev","pushedAt":"2024-07-23T19:29:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"add biorxiv citation","shortMessageHtmlLink":"add biorxiv citation"}},{"before":null,"after":"4caff920cac735b475dfd2f05d7802aa2f56fc19","ref":"refs/heads/PB_subtyping","pushedAt":"2024-07-22T17:35:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"sangeetashukla","name":"Sangeeta Shukla","path":"/sangeetashukla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/82055098?s=80&v=4"},"commit":{"message":"Previously missing PB subtypes added","shortMessageHtmlLink":"Previously missing PB subtypes added"}},{"before":null,"after":"e710f228aee1d4d147f3998416cd0998a1c40058","ref":"refs/heads/subtype_integrate","pushedAt":"2024-07-19T16:54:35.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"sangeetashukla","name":"Sangeeta Shukla","path":"/sangeetashukla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/82055098?s=80&v=4"},"commit":{"message":"Undo cancer_group manual override for select sample_ID as per OPC_566","shortMessageHtmlLink":"Undo cancer_group manual override for select sample_ID as per OPC_566"}},{"before":"34e19feeff834baaf017fe4882acdb80ef7ede57","after":null,"ref":"refs/heads/rokita/consensus-w-freec-wxs","pushedAt":"2024-07-10T00:57:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"}},{"before":"fc87ad125aaae6d43f17e2baf94551c9a0444bde","after":"44188b30b090dc993b30d7eb3e4a9552d7aec4eb","ref":"refs/heads/dev","pushedAt":"2024-07-10T00:57:52.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge pull request #591 from d3b-center/rokita/consensus-w-freec-wxs\n\nCNV consensus w freec wxs","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2393848646\" data-permission-text=\"Title is private\" data-url=\"https://github.com/d3b-center/OpenPedCan-analysis/issues/591\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/d3b-center/OpenPedCan-analysis/pull/591/hovercard\" href=\"https://github.com/d3b-center/OpenPedCan-analysis/pull/591\">#591</a> from d3b-center/rokita/consensus-w-freec-wxs"}},{"before":"0b8d7fac16a44bf3fd5b0e45678a1593ee084ec6","after":null,"ref":"refs/heads/rokita/count-contrib-july9","pushedAt":"2024-07-09T19:56:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"}},{"before":"df7fe7590edf465994a6d7fff2cf774b057e834f","after":"fc87ad125aaae6d43f17e2baf94551c9a0444bde","ref":"refs/heads/dev","pushedAt":"2024-07-09T19:56:14.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"},"commit":{"message":"Merge pull request #595 from d3b-center/rokita/count-contrib-july9\n\nrerun author contributions for biorxiv submission - as of July 9","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2399030961\" data-permission-text=\"Title is private\" data-url=\"https://github.com/d3b-center/OpenPedCan-analysis/issues/595\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/d3b-center/OpenPedCan-analysis/pull/595/hovercard\" href=\"https://github.com/d3b-center/OpenPedCan-analysis/pull/595\">#595</a> from d3b-center/rokita/count-contrib-july9"}},{"before":"ab98712bee254979e4d3f05ef9b757f998f8889b","after":null,"ref":"refs/heads/rokita/rerun-tables","pushedAt":"2024-07-09T19:55:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jharenza","name":"Jo Lynne Rokita","path":"/jharenza","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/207034?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0xNlQxNjo1NjowNi4wMDAwMDBazwAAAAScVuKl","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0xNlQxNjo1NjowNi4wMDAwMDBazwAAAAScVuKl","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNy0wOVQxOTo1NTo1NC4wMDAwMDBazwAAAAR7DJ3i"}},"title":"Activity · d3b-center/OpenPedCan-analysis"}