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Potential Issue With ethnicolr #46

Closed
wj-mitchell opened this issue Nov 27, 2022 · 3 comments · Fixed by #49
Closed

Potential Issue With ethnicolr #46

wj-mitchell opened this issue Nov 27, 2022 · 3 comments · Fixed by #49

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@wj-mitchell
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wj-mitchell commented Nov 27, 2022 •
edited
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Hello,

I'm trying to use this tool for the first time but running into a bit of an issue in the first cell. I'd uploaded a very basic .bib with a single entry and got an error (below). Then I tried using the example .bib used within /diversityStatement under the assumption that if any file should work, that one should, and got the same error. Looking closer at the error, it seemed like an error exists within the ethnicolr library, so I tried rerunning the initial cell with it commented out (no other changes from the default) which did not yield any error messages. It looked to me like maybe ethnicolr has a dependency on protobuf that needs to be deprecated, but I honestly am not sure. Hopefully, I'm just misunderstanding something but I'd be happy to provide any other details if helpful. Thanks so much for your time.

EDIT: Just wanted to note that taking a look at ethnicolr's page appears to confirm that this is the issue. Before commenting out ethnicolr, I could not progress any further. Since doing so, I've nearly completed the pipeline (of course, up until the point that I need the ethnicolr functions). As such, I'll try deprecating to version 0.9.1 and see if that works.

FOLLOW-UP: It may be due to my own inexperience with Jupyter notebooks, but I wasn't able to get it to work with the remote notebook you all provided. It just did not want to revert to an earlier version. However, when I downloaded the materials and ran Python locally, I was able to get ethnicolr 0.9.1 to work I think as expected, though admittedly, I ran into other issues that I think are unrelated so without the final product, I can't be 100% sure. The issue might resolve itself whenever the ethnicolr developers figure out what they need to do, but just wanted to note that. Sorry for all the updates!

Error

/srv/conda/envs/notebook/lib/python3.7/site-packages/sos_notebook/kernel.py:1334: DeprecationWarning: Kernel._parent_header is deprecated in ipykernel 6. Use .get_parent()
  msg['msg_id'] = self._parent_header['header']['msg_id']
Using TensorFlow backend.
ERROR:root:Internal Python error in the inspect module.
Below is the traceback from this internal error.

ERROR:root:Internal Python error in the inspect module.
Below is the traceback from this internal error.

ERROR:root:Internal Python error in the inspect module.
Below is the traceback from this internal error.

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3552, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "/tmp/ipykernel_481/2870756009.py", line 23, in <module>
    from ethnicolr import census_ln, pred_census_ln,pred_wiki_name
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/__init__.py", line 3, in <module>
    from .pred_census_ln import pred_census_ln
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/pred_census_ln.py", line 8, in <module>
    from keras.models import load_model
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/__init__.py", line 3, in <module>
    from . import utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/__init__.py", line 6, in <module>
    from . import conv_utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/conv_utils.py", line 9, in <module>
    from .. import backend as K
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/__init__.py", line 89, in <module>
    from .tensorflow_backend import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py", line 5, in <module>
    import tensorflow as tf
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 99, in <module>
    from tensorflow_core import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 28, in <module>
    from tensorflow.python import pywrap_tensorflow  # pylint: disable=unused-import
  File "<frozen importlib._bootstrap>", line 1019, in _handle_fromlist
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 52, in <module>
    from tensorflow.core.framework.graph_pb2 import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import node_def_pb2 as tensorflow_dot_core_dot_framework_dot_node__def__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/node_def_pb2.py", line 16, in <module>
    from tensorflow.core.framework import attr_value_pb2 as tensorflow_dot_core_dot_framework_dot_attr__value__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/attr_value_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_pb2.py", line 16, in <module>
    from tensorflow.core.framework import resource_handle_pb2 as tensorflow_dot_core_dot_framework_dot_resource__handle__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/resource_handle_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1101, in get_records
    return _fixed_getinnerframes(etb, number_of_lines_of_context, tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 248, in wrapped
    return f(*args, **kwargs)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 281, in _fixed_getinnerframes
    records = fix_frame_records_filenames(inspect.getinnerframes(etb, context))
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 1502, in getinnerframes
    frameinfo = (tb.tb_frame,) + getframeinfo(tb, context)
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 1460, in getframeinfo
    filename = getsourcefile(frame) or getfile(frame)
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 696, in getsourcefile
    if getattr(getmodule(object, filename), '__loader__', None) is not None:
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 733, in getmodule
    if ismodule(module) and hasattr(module, '__file__'):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 953, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 33, in <module>
    from tensorflow._api.v1 import audio
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/_api/v1/audio/__init__.py", line 10, in <module>
    from tensorflow.python.ops.gen_audio_ops import decode_wav
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/ops/gen_audio_ops.py", line 11, in <module>
    from tensorflow.python.eager import context as _context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/eager/context.py", line 29, in <module>
    from tensorflow.core.protobuf import config_pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/protobuf/config_pb2.py", line 16, in <module>
    from tensorflow.core.framework import cost_graph_pb2 as tensorflow_dot_core_dot_framework_dot_cost__graph__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/cost_graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates
Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3552, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "/tmp/ipykernel_481/2870756009.py", line 23, in <module>
    from ethnicolr import census_ln, pred_census_ln,pred_wiki_name
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/__init__.py", line 3, in <module>
    from .pred_census_ln import pred_census_ln
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/pred_census_ln.py", line 8, in <module>
    from keras.models import load_model
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/__init__.py", line 3, in <module>
    from . import utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/__init__.py", line 6, in <module>
    from . import conv_utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/conv_utils.py", line 9, in <module>
    from .. import backend as K
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/__init__.py", line 89, in <module>
    from .tensorflow_backend import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py", line 5, in <module>
    import tensorflow as tf
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 99, in <module>
    from tensorflow_core import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 28, in <module>
    from tensorflow.python import pywrap_tensorflow  # pylint: disable=unused-import
  File "<frozen importlib._bootstrap>", line 1019, in _handle_fromlist
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 52, in <module>
    from tensorflow.core.framework.graph_pb2 import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import node_def_pb2 as tensorflow_dot_core_dot_framework_dot_node__def__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/node_def_pb2.py", line 16, in <module>
    from tensorflow.core.framework import attr_value_pb2 as tensorflow_dot_core_dot_framework_dot_attr__value__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/attr_value_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_pb2.py", line 16, in <module>
    from tensorflow.core.framework import resource_handle_pb2 as tensorflow_dot_core_dot_framework_dot_resource__handle__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/resource_handle_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3472, in run_ast_nodes
    if (await self.run_code(code, result,  async_=asy)):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3569, in run_code
    self.showtraceback(running_compiled_code=True)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2101, in showtraceback
    value, tb, tb_offset=tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1368, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1268, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1125, in structured_traceback
    tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1082, in format_exception_as_a_whole
    last_unique, recursion_repeat = find_recursion(orig_etype, evalue, records)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 382, in find_recursion
    return len(records), 0
TypeError: object of type 'NoneType' has no len()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1101, in get_records
    return _fixed_getinnerframes(etb, number_of_lines_of_context, tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 248, in wrapped
    return f(*args, **kwargs)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 281, in _fixed_getinnerframes
    records = fix_frame_records_filenames(inspect.getinnerframes(etb, context))
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 1502, in getinnerframes
    frameinfo = (tb.tb_frame,) + getframeinfo(tb, context)
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 1460, in getframeinfo
    filename = getsourcefile(frame) or getfile(frame)
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 696, in getsourcefile
    if getattr(getmodule(object, filename), '__loader__', None) is not None:
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 733, in getmodule
    if ismodule(module) and hasattr(module, '__file__'):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 953, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 33, in <module>
    from tensorflow._api.v1 import audio
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/_api/v1/audio/__init__.py", line 10, in <module>
    from tensorflow.python.ops.gen_audio_ops import decode_wav
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/ops/gen_audio_ops.py", line 11, in <module>
    from tensorflow.python.eager import context as _context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/eager/context.py", line 29, in <module>
    from tensorflow.core.protobuf import config_pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/protobuf/config_pb2.py", line 16, in <module>
    from tensorflow.core.framework import cost_graph_pb2 as tensorflow_dot_core_dot_framework_dot_cost__graph__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/cost_graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates
Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3552, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "/tmp/ipykernel_481/2870756009.py", line 23, in <module>
    from ethnicolr import census_ln, pred_census_ln,pred_wiki_name
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/__init__.py", line 3, in <module>
    from .pred_census_ln import pred_census_ln
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/pred_census_ln.py", line 8, in <module>
    from keras.models import load_model
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/__init__.py", line 3, in <module>
    from . import utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/__init__.py", line 6, in <module>
    from . import conv_utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/conv_utils.py", line 9, in <module>
    from .. import backend as K
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/__init__.py", line 89, in <module>
    from .tensorflow_backend import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py", line 5, in <module>
    import tensorflow as tf
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 99, in <module>
    from tensorflow_core import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 28, in <module>
    from tensorflow.python import pywrap_tensorflow  # pylint: disable=unused-import
  File "<frozen importlib._bootstrap>", line 1019, in _handle_fromlist
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 52, in <module>
    from tensorflow.core.framework.graph_pb2 import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import node_def_pb2 as tensorflow_dot_core_dot_framework_dot_node__def__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/node_def_pb2.py", line 16, in <module>
    from tensorflow.core.framework import attr_value_pb2 as tensorflow_dot_core_dot_framework_dot_attr__value__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/attr_value_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_pb2.py", line 16, in <module>
    from tensorflow.core.framework import resource_handle_pb2 as tensorflow_dot_core_dot_framework_dot_resource__handle__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/resource_handle_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3472, in run_ast_nodes
    if (await self.run_code(code, result,  async_=asy)):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3569, in run_code
    self.showtraceback(running_compiled_code=True)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2101, in showtraceback
    value, tb, tb_offset=tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1368, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1268, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1125, in structured_traceback
    tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1082, in format_exception_as_a_whole
    last_unique, recursion_repeat = find_recursion(orig_etype, evalue, records)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 382, in find_recursion
    return len(records), 0
TypeError: object of type 'NoneType' has no len()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3029, in _run_cell
    return runner(coro)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/async_helpers.py", line 78, in _pseudo_sync_runner
    coro.send(None)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3257, in run_cell_async
    interactivity=interactivity, compiler=compiler, result=result)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3491, in run_ast_nodes
    self.showtraceback()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2101, in showtraceback
    value, tb, tb_offset=tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1368, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1268, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1143, in structured_traceback
    chained_exceptions_tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1082, in format_exception_as_a_whole
    last_unique, recursion_repeat = find_recursion(orig_etype, evalue, records)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 382, in find_recursion
    return len(records), 0
TypeError: object of type 'NoneType' has no len()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1101, in get_records
    return _fixed_getinnerframes(etb, number_of_lines_of_context, tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 248, in wrapped
    return f(*args, **kwargs)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 281, in _fixed_getinnerframes
    records = fix_frame_records_filenames(inspect.getinnerframes(etb, context))
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 1502, in getinnerframes
    frameinfo = (tb.tb_frame,) + getframeinfo(tb, context)
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 1460, in getframeinfo
    filename = getsourcefile(frame) or getfile(frame)
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 696, in getsourcefile
    if getattr(getmodule(object, filename), '__loader__', None) is not None:
  File "/srv/conda/envs/notebook/lib/python3.7/inspect.py", line 733, in getmodule
    if ismodule(module) and hasattr(module, '__file__'):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 953, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 33, in <module>
    from tensorflow._api.v1 import audio
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/_api/v1/audio/__init__.py", line 10, in <module>
    from tensorflow.python.ops.gen_audio_ops import decode_wav
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/ops/gen_audio_ops.py", line 11, in <module>
    from tensorflow.python.eager import context as _context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/eager/context.py", line 29, in <module>
    from tensorflow.core.protobuf import config_pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/protobuf/config_pb2.py", line 16, in <module>
    from tensorflow.core.framework import cost_graph_pb2 as tensorflow_dot_core_dot_framework_dot_cost__graph__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/cost_graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates
[IPKernelApp] ERROR | Exception in message handler:
Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3552, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "/tmp/ipykernel_481/2870756009.py", line 23, in <module>
    from ethnicolr import census_ln, pred_census_ln,pred_wiki_name
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/__init__.py", line 3, in <module>
    from .pred_census_ln import pred_census_ln
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ethnicolr/pred_census_ln.py", line 8, in <module>
    from keras.models import load_model
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/__init__.py", line 3, in <module>
    from . import utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/__init__.py", line 6, in <module>
    from . import conv_utils
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/utils/conv_utils.py", line 9, in <module>
    from .. import backend as K
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/__init__.py", line 89, in <module>
    from .tensorflow_backend import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py", line 5, in <module>
    import tensorflow as tf
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 99, in <module>
    from tensorflow_core import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/__init__.py", line 28, in <module>
    from tensorflow.python import pywrap_tensorflow  # pylint: disable=unused-import
  File "<frozen importlib._bootstrap>", line 1019, in _handle_fromlist
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 50, in __getattr__
    module = self._load()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow/__init__.py", line 44, in _load
    module = _importlib.import_module(self.__name__)
  File "/srv/conda/envs/notebook/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/python/__init__.py", line 52, in <module>
    from tensorflow.core.framework.graph_pb2 import *
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/graph_pb2.py", line 16, in <module>
    from tensorflow.core.framework import node_def_pb2 as tensorflow_dot_core_dot_framework_dot_node__def__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/node_def_pb2.py", line 16, in <module>
    from tensorflow.core.framework import attr_value_pb2 as tensorflow_dot_core_dot_framework_dot_attr__value__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/attr_value_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_pb2.py", line 16, in <module>
    from tensorflow.core.framework import resource_handle_pb2 as tensorflow_dot_core_dot_framework_dot_resource__handle__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/resource_handle_pb2.py", line 16, in <module>
    from tensorflow.core.framework import tensor_shape_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__shape__pb2
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/tensorflow_core/core/framework/tensor_shape_pb2.py", line 42, in <module>
    serialized_options=None, file=DESCRIPTOR),
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/google/protobuf/descriptor.py", line 560, in __new__
    _message.Message._CheckCalledFromGeneratedFile()
TypeError: Descriptors cannot not be created directly.
If this call came from a _pb2.py file, your generated code is out of date and must be regenerated with protoc >= 3.19.0.
If you cannot immediately regenerate your protos, some other possible workarounds are:
 1. Downgrade the protobuf package to 3.20.x or lower.
 2. Set PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python (but this will use pure-Python parsing and will be much slower).

More information: https://developers.google.com/protocol-buffers/docs/news/2022-05-06#python-updates

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3472, in run_ast_nodes
    if (await self.run_code(code, result,  async_=asy)):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3569, in run_code
    self.showtraceback(running_compiled_code=True)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2101, in showtraceback
    value, tb, tb_offset=tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1368, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1268, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1125, in structured_traceback
    tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1082, in format_exception_as_a_whole
    last_unique, recursion_repeat = find_recursion(orig_etype, evalue, records)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 382, in find_recursion
    return len(records), 0
TypeError: object of type 'NoneType' has no len()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3029, in _run_cell
    return runner(coro)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/async_helpers.py", line 78, in _pseudo_sync_runner
    coro.send(None)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3257, in run_cell_async
    interactivity=interactivity, compiler=compiler, result=result)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3491, in run_ast_nodes
    self.showtraceback()
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2101, in showtraceback
    value, tb, tb_offset=tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1368, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1268, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1143, in structured_traceback
    chained_exceptions_tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1082, in format_exception_as_a_whole
    last_unique, recursion_repeat = find_recursion(orig_etype, evalue, records)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 382, in find_recursion
    return len(records), 0
TypeError: object of type 'NoneType' has no len()

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2098, in showtraceback
    stb = value._render_traceback_()
AttributeError: 'TypeError' object has no attribute '_render_traceback_'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ipykernel/kernelbase.py", line 406, in dispatch_shell
    await result
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ipykernel/kernelbase.py", line 730, in execute_request
    reply_content = await reply_content
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ipykernel/ipkernel.py", line 387, in do_execute
    cell_id=cell_id,
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/ipykernel/zmqshell.py", line 528, in run_cell
    return super().run_cell(*args, **kwargs)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2975, in run_cell
    raw_cell, store_history, silent, shell_futures, cell_id
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 3036, in _run_cell
    self.showtraceback(running_compiled_code=True)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/interactiveshell.py", line 2101, in showtraceback
    value, tb, tb_offset=tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1368, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1268, in structured_traceback
    self, etype, value, tb, tb_offset, number_of_lines_of_context
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1143, in structured_traceback
    chained_exceptions_tb_offset)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 1082, in format_exception_as_a_whole
    last_unique, recursion_repeat = find_recursion(orig_etype, evalue, records)
  File "/srv/conda/envs/notebook/lib/python3.7/site-packages/IPython/core/ultratb.py", line 382, in find_recursion
    return len(records), 0
TypeError: object of type 'NoneType' has no len()
@dalejn
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dalejn commented Nov 28, 2022

Hi, thanks for checking out our tool and for digging into this bug! I agree, I think it's a protobuf problem due to a recent update from their end, which gets called by ethnicolr. I'll try forcing a downgrade for protobuf as that thread suggests, but it'll take a while for the Binder to rebuild. Hoping to have this resolved by tomorrow and will reply with an update.

@dalejn dalejn linked a pull request Nov 29, 2022 that will close this issue
Refactor #49
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@dalejn
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dalejn commented Nov 29, 2022

Should be resolved now. Thanks again!

@dalejn dalejn closed this as completed Nov 29, 2022
@wj-mitchell
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No worries! Thank you!

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Refactor dalejn/cleanBib
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@dalejn @wj-mitchell