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metadata.yaml
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'@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.3/context.json
about: []
access:
- schemaKey: AccessRequirements
status: dandi:OpenAccess
acknowledgement: We thank the Allen Institute founder, Paul G. Allen, for his vision,
encouragement, and support.
assetsSummary:
approach:
- name: optogenetic approach
schemaKey: ApproachType
- name: electrophysiological approach
schemaKey: ApproachType
dataStandard:
- identifier: RRID:SCR_015242
name: Neurodata Without Borders (NWB)
schemaKey: StandardsType
measurementTechnique:
- name: analytical technique
schemaKey: MeasurementTechniqueType
- name: spike sorting technique
schemaKey: MeasurementTechniqueType
- name: multi electrode extracellular electrophysiology recording technique
schemaKey: MeasurementTechniqueType
- name: signal filtering technique
schemaKey: MeasurementTechniqueType
numberOfBytes: 640663457342
numberOfFiles: 98
numberOfSubjects: 14
schemaKey: AssetsSummary
species:
- identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
name: Mus musculus - House mouse
schemaKey: SpeciesType
variableMeasured:
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- LFP
citation: Westerberg, Jake ; Durand, Severine; Cabasco, Hannah; Belski, Hannah; Loeffler,
Henry; Bawany, Ahad; Peene, R. Carter; Han, Warren; Nguyen, Katrina; Ha, Vivian;
Johnson, Tye; Grasso, Conor; Hardcastle, Ben; Young, Ahrial; Swapp, Jackie ; Gillis,
Ryan; Ouellette, Ben; Caldejon, Shiella; Williford, Ali; Groblewski, A. Peter; Olsen,
Shawn; Kiselycznyk, Carly; Lecoq, Jerome; Maier, Alex; Bastos, Andre (2024) Allen
Institute Openscope - Global/Local Oddball project (Version 0.240503.0152) [Data
set]. DANDI archive. https://doi.org/10.48324/dandi.000253/0.240503.0152
contributor:
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includeInCitation: false
name: National Institutes of Health (NIH)
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- awardNumber: LT0001/2023-L (J.W.)
contactPoint: []
identifier: https://ror.org/02ebx7v45
includeInCitation: false
name: International Human Frontier Science Program Organization
roleName: []
schemaKey: Organization
- contactPoint: []
identifier: https://ror.org/02vm5rt34
includeInCitation: false
name: Vanderbilt University
roleName: []
schemaKey: Organization
- contactPoint: []
identifier: https://ror.org/05csn2x06
includeInCitation: false
name: ' Netherlands Institute for Neuroscience'
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email: j.westerberg@nin.knaw.nl
identifier: 0000-0001-5331-8707
includeInCitation: true
name: 'Westerberg, Jake '
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schemaKey: Person
- email: severined@alleninstitute.org
identifier: 0000-0001-7788-0200
includeInCitation: true
name: Durand, Severine
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schemaKey: Person
- email: hannah.cabasco@alleninstitute.org
identifier: 0009-0001-7899-2463
includeInCitation: true
name: Cabasco, Hannah
roleName:
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schemaKey: Person
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identifier: 0009-0001-5422-5964
includeInCitation: true
name: Belski, Hannah
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- identifier: 0009-0007-3935-6863
includeInCitation: true
name: Loeffler, Henry
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- email: ahad.bawany@alleninstitute.org
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includeInCitation: true
name: Bawany, Ahad
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schemaKey: Person
- email: carter.peene@alleninstitute.org
identifier: 0009-0000-6660-2264
includeInCitation: true
name: Peene, R. Carter
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identifier: 0009-0006-0104-0380
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name: Han, Warren
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- email: katrina.nguyen@alleninstitute.org
identifier: 0009-0009-8547-9703
includeInCitation: true
name: Nguyen, Katrina
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name: Ha, Vivian
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email: alex.maier@vanderbilt.Edu
identifier: 0000-0002-7250-502X
includeInCitation: true
name: Maier, Alex
roleName:
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email: andre.bastos@vanderbilt.edu
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name: Bastos, Andre
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dateCreated: '2022-06-10T22:31:41.258881+00:00'
datePublished: '2024-05-03T01:52:37.551923+00:00'
description: "This dataset was collected for the Global Local Oddball project, as
part of the Allen Institute's OpenScope project. \nThe brain rapidly adapts to unchanging
environments and is most excited by surprising events. A leading model to explain
this phenomenon is predictive coding. Predictive coding proposes that the brain
compares incoming sensory information against a prediction signal. This prediction
is based on an internal model that is generated in higher-order cortex. This model
reflects the brain\u2019s assumptions about the statistics of the environment. If
an incoming sensory signal matches the prediction, the two signals cancel. Expected
sensory data thus are \u201Cexplained away\u201D and leave the brain unexcited.
In other words, predictive coding is subtractive. Whenever the sensory signal does
not match the prediction, subtraction results in a larger value, called the prediction
error. This error signal initiates excitation in the lower-order cortex that propagates
feedforward up the cortical hierarchy (i.e., V1, RL, LM, AL, PM, and AM). Prediction
errors then instigate updates to the internal model to improve future predictions.
Associated prediction update signals flow back down the hierarchy. Consistent with
this model, optogenetic silencing of top-down inputs from frontal to visual cortex
largely eliminates prediction error signals. However, the precise circuit mechanisms
that generate these signals are largely unknown. Specifically, by recording from
multiple neuropixels across the visual cortical hierarchy, we aimed to uncover what
information is carried by layer 2 and 3 spikes that feed forward vs. by layer 5
and 6 spikes that feed back, using recently established analytic tools.\n"
doi: 10.48324/dandi.000253/0.240503.0152
ethicsApproval:
- contactPoint:
schemaKey: ContactPoint
identifier: "\u200BAllen Institute Institutional Animal Care and Use Committee (IACUC),
protocol 2117"
schemaKey: EthicsApproval
id: DANDI:000253/0.240503.0152
identifier: DANDI:000253
keywords:
- 'neocortex '
- predictive coding
- optogenetics
- neuropixels
- mouse
- 'inhibitory '
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://dandiarchive.s3.amazonaws.com/dandisets/000253/0.240503.0152/assets.yaml
name: Allen Institute Openscope - Global/Local Oddball project
protocol: []
publishedBy:
endDate: '2024-05-03T01:52:37.551923+00:00'
id: urn:uuid:dcd802cd-e067-42ad-9a30-22756dca102f
name: DANDI publish
schemaKey: PublishActivity
startDate: '2024-05-03T01:52:37.551923+00:00'
wasAssociatedWith:
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identifier: RRID:SCR_017571
name: DANDI API
schemaKey: Software
version: 0.1.0
relatedResource:
- identifier: OpenScope DataBook
name: OpenScope DataBook
relation: dcite:IsSupplementedBy
schemaKey: Resource
url: https://alleninstitute.github.io/openscope_databook/intro.html
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name: OpenScope DataPortal
relation: dcite:IsSupplementedBy
schemaKey: Resource
url: https://openscopedatafront.firebaseapp.com/about
- identifier: '10.1038/s41586-020-03171-x '
name: 'Survey of spiking in the mouse visual system reveals functional hierarchy '
relation: dcite:IsSupplementTo
schemaKey: Resource
url: https://pubmed.ncbi.nlm.nih.gov/33473216/
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.3
studyTarget: []
url: https://dandiarchive.org/dandiset/000253/0.240503.0152
version: 0.240503.0152
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