-
Notifications
You must be signed in to change notification settings - Fork 0
/
metadata.yaml
208 lines (208 loc) · 7.13 KB
/
metadata.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
'@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.4/context.json
about: []
access:
- schemaKey: AccessRequirements
status: dandi:OpenAccess
assetsSummary:
approach:
- name: electrophysiological approach
schemaKey: ApproachType
- name: behavioral approach
schemaKey: ApproachType
dataStandard:
- identifier: RRID:SCR_015242
name: Neurodata Without Borders (NWB)
schemaKey: StandardsType
measurementTechnique:
- name: surgical technique
schemaKey: MeasurementTechniqueType
- name: spike sorting technique
schemaKey: MeasurementTechniqueType
- name: behavioral technique
schemaKey: MeasurementTechniqueType
- name: analytical technique
schemaKey: MeasurementTechniqueType
- name: signal filtering technique
schemaKey: MeasurementTechniqueType
- name: multi electrode extracellular electrophysiology recording technique
schemaKey: MeasurementTechniqueType
numberOfBytes: 361482309556
numberOfFiles: 24
numberOfSubjects: 23
schemaKey: AssetsSummary
species:
- identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
name: Mus musculus - House mouse
schemaKey: SpeciesType
variableMeasured:
- BehavioralTimeSeries
- Units
- ElectricalSeries
- ElectrodeGroup
- LFP
- ProcessingModule
citation: Claar, Leslie D; Rembado, Irene; Kuyat, Jacqulyn R; Russo, Simone; Marks,
Lydia C; Olsen, Shawn R; Koch, Christof (2023) Simultaneous electroencephalography,
extracellular electrophysiology, and cortical electrical stimulation in head-fixed
mice (Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000458/draft
contributor:
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
email: lesliec@alleninstitute.org
identifier: 0000-0002-4030-9171
includeInCitation: true
name: Claar, Leslie D
roleName:
- dcite:ContactPerson
- dcite:Author
schemaKey: Person
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
email: irene.rembado@alleninstitute.org
includeInCitation: true
name: Rembado, Irene
roleName:
- dcite:Author
- dcite:ContactPerson
schemaKey: Person
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
includeInCitation: true
name: Kuyat, Jacqulyn R
roleName:
- dcite:Author
schemaKey: Person
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
includeInCitation: true
name: Russo, Simone
roleName:
- dcite:Author
schemaKey: Person
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
includeInCitation: true
name: Marks, Lydia C
roleName:
- dcite:Author
schemaKey: Person
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
includeInCitation: true
name: Olsen, Shawn R
roleName:
- dcite:Author
schemaKey: Person
- affiliation:
- identifier: https://ror.org/03cpe7c52
name: Allen Institute
schemaKey: Affiliation
includeInCitation: true
name: Koch, Christof
roleName:
- dcite:Author
schemaKey: Person
- contactPoint: []
includeInCitation: false
name: Tiny Blue Dot Foundation
roleName:
- dcite:Funder
schemaKey: Organization
url: https://www.tinybluedotfoundation.org/
- contactPoint:
- schemaKey: ContactPoint
identifier: https://ror.org/03cpe7c52
includeInCitation: false
name: Allen Institute
roleName:
- dcite:Sponsor
- dcite:Affiliation
schemaKey: Organization
url: https://alleninstitute.org/
dateCreated: '2023-03-16T16:02:14.771820+00:00'
datePublished: '2023-03-17T00:39:49.682458+00:00'
description: "In this set of experiments, we recorded neural signals using an electroencephalography
(EEG) array and Neuropixels probes while directly electrically stimulating the cortex
in awake and anesthetized head-fixed mice. Details of the experiments can be found
in the associated manuscript (Claar, Rembado et al., 2023). Briefly, the recordings
and stimulation commenced while the mouse was awake, free to rest or move on a rotating
disc. After delivering a series of stimuli, anesthesia was induced with isoflurane
(5% via inhalation). Once a surgical level of anesthesia was reached, the mouse
was maintained unconscious (1-1.5% isoflurane) during the delivery of another series
of stimuli. In some subjects another series of stimuli was delivered after the isoflurane
was turned off, this epoch/state is referred to as \u201Crecovery\u201D in the dataset.\n\nEach
session file includes the following data: raw EEG signals from all 30 surface electrodes
and the associated electrode information; raw LFP signals from all electrodes on
all Neuropixels probes (if used) and the associated electrode information; spike
times for all units (spike sorted with Kilosort 2.0) that passed our quality threshold
with associated information (brain region, spike waveform duration, etc.); subject\u2019s
speed computed from the rotation of the disc for the entire session; epochs marking
when isoflurane was induced and when it was maintained; and a trial table containing
information about every stimulus delivered throughout the session.\n\nAll sessions
included an awake and an isoflurane epoch, but not all sessions included a recovery
epoch. Some subjects received visual stimulation trials (visual stimuli presented
on a screen in the subject\u2019s right field of view) interleaved with the electrical
stimulation trials."
ethicsApproval: []
id: DANDI:000458/draft
identifier: DANDI:000458
keywords:
- EEG
- Neuropixels
- electrical stimulation
- brain states
- cortico-thalamic interactions
- extracellular electrophysiology
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://api.dandiarchive.org/api/dandisets/000458/versions/draft/assets/
name: Simultaneous electroencephalography, extracellular electrophysiology, and cortical
electrical stimulation in head-fixed mice
protocol: []
publishedBy:
endDate: '2023-03-17T00:39:49.682458+00:00'
id: urn:uuid:9365f375-532b-46e6-92bb-b6587df796f0
name: DANDI publish
schemaKey: PublishActivity
startDate: '2023-03-17T00:39:49.682458+00:00'
wasAssociatedWith:
- id: urn:uuid:67d2b19b-0f63-4846-891c-894c7cde6086
identifier: RRID:SCR_017571
name: DANDI API
schemaKey: Software
version: 0.1.0
relatedResource:
- identifier: Reviewed preprint (eLife)
name: Cortico-thalamo-cortical interactions modulate electrically evoked EEG responses
in mice
relation: dcite:IsDescribedBy
repository: eLife
schemaKey: Resource
url: https://elifesciences.org/reviewed-preprints/84630
- identifier: Manuscript preprint (bioRxiv)
name: Cortico-thalamo-cortical interactions modulate electrically evoked EEG responses
in mice
relation: dcite:IsDescribedBy
repository: bioRxiv
schemaKey: Resource
url: https://www.biorxiv.org/content/10.1101/2022.07.22.501195v3
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.4
studyTarget: []
url: https://dandiarchive.org/dandiset/000458/draft
version: draft
wasGeneratedBy: []