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metadata.yaml
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'@context': https://raw.githubusercontent.com/dandi/schema/master/releases/0.6.4/context.json
about: []
access:
- schemaKey: AccessRequirements
status: dandi:OpenAccess
assetsSummary:
approach:
- name: microscopy approach; cell population imaging
schemaKey: ApproachType
- name: behavioral approach
schemaKey: ApproachType
dataStandard:
- identifier: RRID:SCR_015242
name: Neurodata Without Borders (NWB)
schemaKey: StandardsType
measurementTechnique:
- name: surgical technique
schemaKey: MeasurementTechniqueType
- name: two-photon microscopy technique
schemaKey: MeasurementTechniqueType
- name: analytical technique
schemaKey: MeasurementTechniqueType
- name: behavioral technique
schemaKey: MeasurementTechniqueType
numberOfBytes: 62484268521319
numberOfFiles: 3036
numberOfSubjects: 271
schemaKey: AssetsSummary
species:
- identifier: http://purl.obolibrary.org/obo/NCBITaxon_10090
name: Mus musculus - House mouse
schemaKey: SpeciesType
variableMeasured:
- OpticalChannel
- TwoPhotonSeries
- ImagingPlane
- PlaneSegmentation
- ProcessingModule
- BehavioralTimeSeries
- SpatialSeries
- CompassDirection
- PupilTracking
- EyeTracking
citation: Allen Institute (2024) Allen Institute - Visual Coding - Optical Physiology
(Version draft) [Data set]. DANDI archive. https://dandiarchive.org/dandiset/000728/draft
contributor:
- affiliation: []
email: cody.c.baker.phd@gmail.com
includeInCitation: false
name: Baker, Cody
roleName:
- dcite:DataCurator
schemaKey: Person
- email: info@alleninstitute.org
identifier: https://ror.org/03cpe7c52
includeInCitation: true
name: Allen Institute
roleName:
- dcite:Funder
- dcite:ContactPerson
schemaKey: Organization
url: https://alleninstitute.org/
dateCreated: '2023-12-11T05:09:39.457563+00:00'
datePublished: '2024-08-27T18:09:04.150074+00:00'
description: 'From the Allen Institute Brain Observatory, the Visual Coding (optical
physiology) dataset is a large-scale, standardized survey of physiological activity
across the mouse visual cortex, hippocampus, and thalamus. This two-photon imaging
dataset features visually evoked calcium responses from GCaMP6-expressing neurons
in a range of cortical layers, visual areas, and Cre lines. We hope that experimentalists
and modelers will use these comprehensive, open datasets as a testbed for theories
of visual information processing.
Full documentation of the Visual Coding Ophys dataset and tutorials can be found
here: https://observatory.brain-map.org/visualcoding/
The Visual Coding Ecephys (NeuroPixels) dataset can be found here: https://dandiarchive.org/dandiset/000021
'
ethicsApproval: []
id: DANDI:000728/draft
identifier: DANDI:000728
keywords: []
license:
- spdx:CC-BY-4.0
manifestLocation:
- https://api.dandiarchive.org/api/dandisets/000728/versions/draft/assets/
name: Allen Institute - Visual Coding - Optical Physiology
protocol: []
publishedBy:
endDate: '2024-08-27T18:09:04.150074+00:00'
id: urn:uuid:b5178ec3-dce6-42cf-8f89-e02f9c6869a7
name: DANDI publish
schemaKey: PublishActivity
startDate: '2024-08-27T18:09:04.150074+00:00'
wasAssociatedWith:
- id: urn:uuid:8ee522b3-6cdf-4ebc-8d7c-7b200e3adf87
identifier: RRID:SCR_017571
name: DANDI API
schemaKey: Software
version: 0.1.0
relatedResource:
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name: Example Notebook
relation: dcite:IsSupplementTo
repository: dandi/example-notebooks
resourceType: dcite:ComputationalNotebook
schemaKey: Resource
url: https://github.com/dandi/example-notebooks/tree/master/000728/AllenInstitute
- identifier: 3c42c5225c156b59e20d549d4889be7e7ebb8209
name: Conversion Software
relation: dcite:IsSourceOf
repository: catalystneuro/visual-coding-to-nwb-v2
resourceType: dcite:Software
schemaKey: Resource
url: https://github.com/catalystneuro/visual-coding-to-nwb-v2
repository: https://dandiarchive.org
schemaKey: Dandiset
schemaVersion: 0.6.4
studyTarget: []
url: https://dandiarchive.org/dandiset/000728/draft
version: draft
wasGeneratedBy: []