make_sample2Age_table.sh

#!/bin/bash

#------------------------------------------------------------------------------
# TITLE
#
# Link to publication
# TO ADD ONCE AVAILABLE
#
# Script available from:
# https://github.com/darogan/CTR_mzg205_0007
#
#
# Analysis Performed by Russell S. Hamilton
# Centre for Trophoblast Reseach, University of Cambridge, UK
# Copyright Russell S. Hamilton (rsh46@cam.ac.uk)
#
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# WITHOUT ANY WARRANTY; without even the implied warranty of 
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#------------------------------------------------------------------------------



grep "Sample_title" GSE109071_series_matrix.txt | sed 's/Mouse embryo cell //g' | sed 's/"//g' | tr '\t' ', ' | sed 's/.Sample_title//g' | sed 's/^,//g' > sample2age.tab.csv


grep "Sample_characteristics_ch1" GSE109071_series_matrix.txt | grep age | sed 's/age: embryonic day //g' | sed 's/"//g' | tr '\t' ', ' | sed 's/.Sample_characteristics_ch1//g' | sed 's/^,//g' >> sample2age.tab.csv