paper.md

Parameters of the models built in the 3DGB paper

3D models (in PDB format) and animated gifs are avaialble on Zenodo.

Saccharomyces cerevisiae

Genome sequence

Configuration files:

• WT sample
• mcd1 depleted sample

Schizosaccharomyces pombe

Genome sequence

Configuration files for the 8 samples (X minutes after G2 synchronisation):

• 20 min
• 30 min
• 40 min
• 50 min
• 60 min
• 70 min
• 80 min
• 120 min

Neurospora crassa

Genome sequence

Configuration files:

• WT samples:
  • config_n_crassa_nc14.yml (data from Rodriguez et al. 2022)
  • config_n_crassa_WT.yml (data from Galazka et al. 2016)
• hp0 mutant sample