diff --git a/.github/workflows/build_publish.yml b/.github/workflows/build_publish.yml new file mode 100644 index 0000000..728b212 --- /dev/null +++ b/.github/workflows/build_publish.yml @@ -0,0 +1,68 @@ +name: Build and upload to PyPI + +on: + release: + types: [ published ] + pull_request: + branches: [ master ] + +jobs: + build_dist: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: '3.9' + + - name: Install poetry + shell: bash + run: | + curl -sSL -o get-poetry.py https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py + python get-poetry.py -y + # https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-commands-for-github-actions#adding-a-system-path + echo "$HOME/.poetry/bin" >> $GITHUB_PATH + + - name: Configure poetry + shell: bash + run: | + poetry --version + poetry config virtualenvs.in-project true + + - name: Set up cache + uses: actions/cache@v2.1.6 + id: cache + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }} + + - name: Install dependencies + run: | + poetry install --no-interaction + + - name: Build package + run: poetry build --no-interaction + + - name: Save artifacts + uses: actions/upload-artifact@v3 + with: + name: blocklib-dist + path: ./dist + + upload_pypi: + needs: [build_dist] + runs-on: ubuntu-latest + + # upload to PyPI only on release + if: github.event.release && github.event.action == 'published' + steps: + - uses: actions/download-artifact@v3 + with: + name: blocklib-dist + path: dist + + - uses: pypa/gh-action-pypi-publish@v1.4.2 + with: + user: __token__ + password: ${{ secrets.PYPI_API_TOKEN }} \ No newline at end of file diff --git a/.github/workflows/python-test.yml b/.github/workflows/python-test.yml index d59977d..f84ff91 100644 --- a/.github/workflows/python-test.yml +++ b/.github/workflows/python-test.yml @@ -1,15 +1,15 @@ # This workflow will install Python dependencies, run tests and lint with a variety of Python versions # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions -name: Python Unit Tests +name: Testing # Ref: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#on # Triggers the workflow on push pushed to any branch in a repository on: push jobs: - pytest: - name: ${{ matrix.os }} / ${{ matrix.python-version }} + unittests: + name: Unit tests / ${{ matrix.os }} / ${{ matrix.python-version }} runs-on: ${{ matrix.os }} # Ref: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobsjob_idcontinue-on-error continue-on-error: ${{ matrix.experimental }} @@ -22,6 +22,7 @@ jobs: - "3.7" - "3.8" - "3.9" + - "3.10" # How to add an experimental job: # - "3.10.0-alpha.6" # include: @@ -31,14 +32,12 @@ jobs: steps: - uses: actions/checkout@v3 + - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v3 with: python-version: ${{ matrix.python-version }} - - name: Get full Python version - id: full-python-version - shell: bash - run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") + - name: Install poetry shell: bash run: | @@ -64,4 +63,57 @@ jobs: poetry install --no-interaction - name: Test with pytest run: | - poetry run pytest -q tests + poetry run pytest --cov=blocklib --cov-report=xml:coverage.xml -q tests + + - name: Upload coverage to Codecov + uses: codecov/codecov-action@v2 + with: + env_vars: OS,PYTHON + fail_ci_if_error: false + files: ./coverage.xml + flags: unittests + name: codecov-blocklib + + notebooktests: + name: Notebook tests / ${{ matrix.python }} / ${{ matrix.os }} + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ macos-latest, ubuntu-latest ] + python: [ "3.10" ] + + steps: + - uses: actions/checkout@v3 + - name: Set up Python ${{ matrix.python }} + uses: actions/setup-python@v3 + with: + python-version: ${{ matrix.python }} + + - name: Install poetry + shell: bash + run: | + curl -sSL -o get-poetry.py https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py + python get-poetry.py -y + # https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-commands-for-github-actions#adding-a-system-path + echo "$HOME/.poetry/bin" >> $GITHUB_PATH + + - name: Configure poetry + shell: bash + run: | + poetry --version + poetry config virtualenvs.in-project true + + - name: Set up cache + uses: actions/cache@v2.1.6 + id: cache + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }} + + - name: Install dependencies + run: | + poetry install -E docs --no-interaction + + - name: Test notebooks + shell: bash + run: poetry run pytest --nbval docs/tutorial \ No newline at end of file diff --git a/.github/workflows/typechecking.yml b/.github/workflows/typechecking.yml new file mode 100644 index 0000000..ffb6609 --- /dev/null +++ b/.github/workflows/typechecking.yml @@ -0,0 +1,31 @@ +name: Typechecking + +on: + push: + branches: [ master ] + pull_request: + branches: [ master ] + + +jobs: + typechecking: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - uses: actions/setup-python@v3 + with: + python-version: 3.x + - name: mypy (pinned) + run: | + pip install --upgrade pip + pip install -U mypy==0.931 + pip install -U pydantic + pip install -U types-setuptools + mypy blocklib --ignore-missing-imports --no-implicit-optional --disallow-untyped-calls + - name: mypy (latest) + run: | + pip install --upgrade pip + pip install -U mypy + pip install -U pydantic + pip install -U types-setuptools + mypy blocklib --ignore-missing-imports --no-implicit-optional --disallow-untyped-calls diff --git a/azure-pipelines.yml b/azure-pipelines.yml deleted file mode 100644 index 1bad87c..0000000 --- a/azure-pipelines.yml +++ /dev/null @@ -1,134 +0,0 @@ -trigger: - branches: - include: - - '*' - tags: - include: - - v* - -stages: -- stage: static_checks - displayName: Static Checks - dependsOn: [] - jobs: - - job: typechecking - displayName: 'Typechecking' - pool: - vmImage: 'ubuntu-18.04' - steps: - - task: UsePythonVersion@0 - inputs: - versionSpec: '3.8' - - script: | - python -m pip install -U mypy==0.812 pydantic - mypy blocklib --ignore-missing-imports --no-implicit-optional --disallow-untyped-calls - displayName: 'mypy (pinned)' - - - script: | - python -m pip install types-pkg_resources - python -m pip install -U mypy - mypy blocklib --ignore-missing-imports --no-implicit-optional --disallow-untyped-calls - displayName: 'mypy (latest)' - continueOnError: True - - - job: tag_check - displayName: "Check for Git tags" - pool: - vmImage: 'ubuntu-18.04' - steps: - # In this step, if this build is triggered by a tag, it will add the tag 'doRelease' to the current build. This tag - # is used to trigger the release pipeline. - - script: echo "##vso[build.addbuildtag]doRelease" - condition: startsWith(variables['Build.SourceBranch'], 'refs/tags/') - -- stage: test_and_build - displayName: 'Test and build' - dependsOn: [] - jobs: - - job: testnbuild - displayName: Linux - strategy: - matrix: - python37: - PYTHON_VERSION: '3.7' - python38: - PYTHON_VERSION: '3.8' - python39: - PYTHON_VERSION: '3.9' - - pool: - vmImage: 'ubuntu-18.04' - steps: - - task: UsePythonVersion@0 - inputs: - versionSpec: $(PYTHON_VERSION) - - script: | - pip install -U pip - pip install -U poetry - poetry install - displayName: 'Install requirements' - - script: | - poetry run pytest --cov=blocklib --junitxml=testResults.xml --cov-report=xml:coverage.xml - displayName: 'Tests' - - # Test tutorial jupyter notebooks - - script: - poetry install -E docs -vv - - script: - poetry run pytest --nbval docs/tutorial - displayName: 'Notebook test' - - # Send report to codecov - - bash: | - report_name="ubuntu18-04_$(PYTHON_VERSION)" - poetry run codecov --token $(CODECOV_TOKEN) \ - --file coverage.xml \ - -n ${report_name} - displayName: 'Send coverage to codecov' - condition: succeededOrFailed() - -- stage: package - displayName: Build Wheel Packages - dependsOn: ['test_and_build'] - jobs: - - job: linux - pool: {vmImage: 'Ubuntu-18.04'} - strategy: - matrix: - Python36: - python.version: '3.6' - Python37: - python.version: '3.7' - Python38: - python.version: '3.8' - Python39: - python.version: '3.9' - - steps: - - task: UsePythonVersion@0 - inputs: - versionSpec: '$(python.version)' - displayName: 'Use Python $(python.version)' - - # artifact creation - - script: | - pip install -U pip - pip install -U poetry - poetry -V - displayName: 'Install requirements' - - - script: - poetry build -vv --no-interaction - displayName: 'Artifact creation' - - # copy artifact - - task: CopyFiles@2 - inputs: - targetFolder: $(Build.ArtifactStagingDirectory) - - # publish artifact - - task: PublishBuildArtifacts@1 - inputs: - PathtoPublish: '$(Build.ArtifactStagingDirectory)' - ArtifactName: 'dist' - publishLocation: 'Container' \ No newline at end of file diff --git a/codecov.yml b/codecov.yml index a61a38c..a3c173e 100644 --- a/codecov.yml +++ b/codecov.yml @@ -16,4 +16,4 @@ comment: # prevent premature reporting codecov: notify: - after_n_builds: 2 + after_n_builds: 6 diff --git a/docs/devops.rst b/docs/devops.rst index d9de900..816b319 100644 --- a/docs/devops.rst +++ b/docs/devops.rst @@ -1,41 +1,39 @@ Devops =========== -Azure Pipeline +GitHub Actions -------------- -``blocklib`` is automatically built and tested using Azure Pipeline -as part of the `Anonlink `_ project. +``blocklib`` is automatically built and tested using `GitHub actions `_. -The continuous integration pipeline is `here `_, -and the release pipeline is `here `_ +There are currently three workflows: -Build Pipeline +Testing ~~~~~~~~~~~~~~ -The build pipeline is defined in the script ``azure-pipelines.yml``. +The testing workflow is defined in the script ``.github/workflows/python-test.yml``. -There are three top level stages in the build pipeline: +It consists of two jobs -- *Static Checks* - run typechecking with mypy. -- *Test and build* - tests the library using ``pytest`` with different versions of ``Python``. -- *Build Wheel Packages* - packages blocklib into wheels and saves the build artifacts. +- *Unit tests* - tests the library using ``pytest`` with different combinations of python versions and operating systems. +- *Notebook tests* - tests the tutorial notebooks using ``pytest``. -The *Test and build* job does: +Type Checking +~~~~~~~~~~~~~~ - - install the requirements, - - run tests on Ubuntu 18.04 OS, for ``Python 3.6``, ``Python 3.7``, ``Python 3.8`` and ``Python 3.9`` - - publish the test results, - - publish the code coverage, - - package and publish the artifacts. +The type checking workflow is defined in the script ``.github/workflows/typechecking.yml``. +It runs typechecking with mypy. -Release Pipeline -~~~~~~~~~~~~~~~~ +Build and Publish +~~~~~~~~~~~~~~~~~~ -The release pipeline publishes the built wheels and source code to `PyPi `_ -as ``blocklib``. +The build and publish workflow is defined in the script ``.github/workflows/build_publish.yml``. -.. Note:: +It consists of two jobs: - The release pipeline requires manual intervention by a Data61 team member. +- *Build distribution Packages* - packages blocklib into wheels and saves the build artifacts. +- *Publish to PyPI* - uploads the built artifacts to PyPI. + +.. Note:: + The *Publish to PyPI* job is only triggered on a GitHub release. diff --git a/poetry.lock b/poetry.lock index ce13aff..18b99c4 100644 --- a/poetry.lock +++ b/poetry.lock @@ -6,14 +6,6 @@ category = "main" optional = true python-versions = "*" -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" -optional = false -python-versions = "*" - [[package]] name = "appnope" version = "0.1.2" @@ -24,21 +16,37 @@ python-versions = "*" [[package]] name = "argon2-cffi" -version = "20.1.0" +version = "21.3.0" description = "The secure Argon2 password hashing algorithm." category = "main" optional = true -python-versions = "*" +python-versions = ">=3.6" [package.dependencies] -cffi = ">=1.0.0" -six = "*" +argon2-cffi-bindings = "*" +dataclasses = {version = "*", markers = "python_version < \"3.7\""} +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] -docs = ["sphinx"] +dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] +docs = ["sphinx", "sphinx-notfound-page", "furo"] tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] +[[package]] +name = "argon2-cffi-bindings" +version = "21.2.0" +description = "Low-level CFFI bindings for Argon2" +category = "main" +optional = true +python-versions = ">=3.6" + +[package.dependencies] +cffi = ">=1.0.1" + +[package.extras] +dev = ["pytest", "cogapp", "pre-commit", "wheel"] +tests = ["pytest"] + [[package]] name = "async-generator" version = "1.10" @@ -57,17 +65,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "attrs" -version = "20.3.0" +version = "21.4.0" description = "Classes Without Boilerplate" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] -docs = ["furo", "sphinx", "zope.interface"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "babel" @@ -89,43 +97,20 @@ optional = true python-versions = "*" [[package]] -name = "bitarray-hardbyte" -version = "1.6.2" +name = "bitarray" +version = "2.4.0" description = "efficient arrays of booleans -- C extension" category = "main" optional = false python-versions = "*" -[[package]] -name = "black" -version = "20.8b1" -description = "The uncompromising code formatter." -category = "dev" -optional = false -python-versions = ">=3.6" - -[package.dependencies] -appdirs = "*" -click = ">=7.1.2" -dataclasses = {version = ">=0.6", markers = "python_version < \"3.7\""} -mypy-extensions = ">=0.4.3" -pathspec = ">=0.6,<1" -regex = ">=2020.1.8" -toml = ">=0.10.1" -typed-ast = ">=1.4.0" -typing-extensions = ">=3.7.4" - -[package.extras] -colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.3.2)", "aiohttp-cors"] - [[package]] name = "bleach" -version = "3.3.0" +version = "4.1.0" description = "An easy safelist-based HTML-sanitizing tool." category = "main" optional = true -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" [package.dependencies] packaging = "*" @@ -134,15 +119,15 @@ webencodings = "*" [[package]] name = "certifi" -version = "2020.12.5" +version = "2021.10.8" description = "Python package for providing Mozilla's CA Bundle." category = "main" -optional = false +optional = true python-versions = "*" [[package]] name = "cffi" -version = "1.14.5" +version = "1.15.0" description = "Foreign Function Interface for Python calling C code." category = "main" optional = true @@ -152,32 +137,15 @@ python-versions = "*" pycparser = "*" [[package]] -name = "chardet" -version = "4.0.0" -description = "Universal encoding detector for Python 2 and 3" +name = "charset-normalizer" +version = "2.0.12" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" - -[[package]] -name = "click" -version = "7.1.2" -description = "Composable command line interface toolkit" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" - -[[package]] -name = "codecov" -version = "2.1.12" -description = "Hosted coverage reports for GitHub, Bitbucket and Gitlab" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +optional = true +python-versions = ">=3.5.0" -[package.dependencies] -coverage = "*" -requests = ">=2.7.9" +[package.extras] +unicode_backport = ["unicodedata2"] [[package]] name = "colorama" @@ -189,14 +157,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "5.5" +version = "6.2" description = "Code coverage measurement for Python" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" +python-versions = ">=3.6" [package.extras] -toml = ["toml"] +toml = ["tomli"] [[package]] name = "dataclasses" @@ -208,11 +176,11 @@ python-versions = ">=3.6, <3.7" [[package]] name = "decorator" -version = "4.4.2" +version = "5.1.1" description = "Decorators for Humans" category = "main" optional = true -python-versions = ">=2.6, !=3.0.*, !=3.1.*" +python-versions = ">=3.5" [[package]] name = "defusedxml" @@ -232,37 +200,23 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "entrypoints" -version = "0.3" +version = "0.4" description = "Discover and load entry points from installed packages." category = "main" optional = true -python-versions = ">=2.7" - -[[package]] -name = "flake8" -version = "4.0.1" -description = "the modular source code checker: pep8 pyflakes and co" -category = "dev" -optional = false python-versions = ">=3.6" -[package.dependencies] -importlib-metadata = {version = "<4.3", markers = "python_version < \"3.8\""} -mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.8.0,<2.9.0" -pyflakes = ">=2.4.0,<2.5.0" - [[package]] name = "idna" -version = "2.10" +version = "3.3" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +optional = true +python-versions = ">=3.5" [[package]] name = "imagesize" -version = "1.2.0" +version = "1.3.0" description = "Getting image size from png/jpeg/jpeg2000/gif file" category = "main" optional = true @@ -270,7 +224,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "3.7.3" +version = "4.8.3" description = "Read metadata from Python packages" category = "main" optional = false @@ -282,7 +236,23 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=3.5,!=3.7.3)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pytest-cov", "pytest-enabler", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +perf = ["ipython"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] + +[[package]] +name = "importlib-resources" +version = "5.4.0" +description = "Read resources from Python packages" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} + +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] [[package]] name = "iniconfig" @@ -294,7 +264,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "5.5.0" +version = "5.5.6" description = "IPython Kernel for Jupyter" category = "main" optional = true @@ -303,6 +273,7 @@ python-versions = ">=3.5" [package.dependencies] appnope = {version = "*", markers = "platform_system == \"Darwin\""} ipython = ">=5.0.0" +ipython-genutils = "*" jupyter-client = "*" tornado = ">=4.2" traitlets = ">=4.1.0" @@ -366,17 +337,17 @@ testing = ["Django (<3.1)", "colorama", "docopt", "pytest (>=3.9.0,<5.0.0)"] [[package]] name = "jinja2" -version = "2.11.3" +version = "3.0.3" description = "A very fast and expressive template engine." category = "main" optional = true -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" [package.dependencies] -MarkupSafe = ">=0.23" +MarkupSafe = ">=2.0" [package.extras] -i18n = ["Babel (>=0.8)"] +i18n = ["Babel (>=2.7)"] [[package]] name = "jsonschema" @@ -398,33 +369,35 @@ format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator [[package]] name = "jupyter-client" -version = "6.1.12" +version = "7.1.2" description = "Jupyter protocol implementation and client libraries" category = "main" optional = true -python-versions = ">=3.5" +python-versions = ">=3.6.1" [package.dependencies] +entrypoints = "*" jupyter-core = ">=4.6.0" +nest-asyncio = ">=1.5" python-dateutil = ">=2.1" pyzmq = ">=13" tornado = ">=4.1" traitlets = "*" [package.extras] -doc = ["sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["async-generator", "ipykernel", "ipython", "mock", "pytest-asyncio", "pytest-timeout", "pytest", "jedi (<0.18)"] +doc = ["myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-commit", "pytest", "pytest-asyncio", "pytest-cov", "pytest-timeout", "jedi (<0.18)"] [[package]] name = "jupyter-core" -version = "4.7.1" +version = "4.9.2" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = true python-versions = ">=3.6" [package.dependencies] -pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\""} +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} traitlets = "*" [[package]] @@ -440,19 +413,11 @@ pygments = ">=2.4.1,<3" [[package]] name = "markupsafe" -version = "1.1.1" +version = "2.0.1" description = "Safely add untrusted strings to HTML/XML markup." category = "main" optional = true -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" - -[[package]] -name = "mccabe" -version = "0.6.1" -description = "McCabe checker, plugin for flake8" -category = "dev" -optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "metaphone" @@ -498,23 +463,23 @@ python-versions = "*" [[package]] name = "nbclient" -version = "0.5.3" +version = "0.5.9" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "main" optional = true python-versions = ">=3.6.1" [package.dependencies] -async-generator = "*" +async-generator = {version = "*", markers = "python_version < \"3.7\""} jupyter-client = ">=6.1.5" nbformat = ">=5.0" nest-asyncio = "*" traitlets = ">=4.2" [package.extras] -dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] [[package]] name = "nbconvert" @@ -548,7 +513,7 @@ webpdf = ["pyppeteer (==0.2.2)"] [[package]] name = "nbformat" -version = "5.1.2" +version = "5.1.3" description = "The Jupyter Notebook format" category = "main" optional = true @@ -598,7 +563,7 @@ six = "*" [[package]] name = "nest-asyncio" -version = "1.5.1" +version = "1.5.4" description = "Patch asyncio to allow nested event loops" category = "main" optional = true @@ -606,7 +571,7 @@ python-versions = ">=3.5" [[package]] name = "notebook" -version = "6.4.4" +version = "6.4.10" description = "A web-based notebook environment for interactive computing" category = "main" optional = true @@ -619,11 +584,12 @@ ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" -nbconvert = "*" +nbconvert = ">=5" nbformat = "*" +nest-asyncio = ">=1.5" prometheus-client = "*" pyzmq = ">=17" -Send2Trash = ">=1.5.0" +Send2Trash = ">=1.8.0" terminado = ">=0.8.3" tornado = ">=6.1" traitlets = ">=4.2.1" @@ -643,14 +609,14 @@ python-versions = ">=3.7" [[package]] name = "packaging" -version = "20.9" +version = "21.3" description = "Core utilities for Python packages" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.dependencies] -pyparsing = ">=2.0.2" +pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" @@ -670,7 +636,7 @@ test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"] [[package]] name = "pandocfilters" -version = "1.4.3" +version = "1.5.0" description = "Utilities for writing pandoc filters in python" category = "main" optional = true @@ -687,14 +653,6 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] testing = ["docopt", "pytest (>=3.0.7)"] -[[package]] -name = "pathspec" -version = "0.8.1" -description = "Utility library for gitignore style pattern matching of file paths." -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" - [[package]] name = "pexpect" version = "4.8.0" @@ -716,32 +674,33 @@ python-versions = "*" [[package]] name = "pluggy" -version = "0.13.1" +version = "1.0.0" description = "plugin and hook calling mechanisms for python" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.dependencies] importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] name = "prometheus-client" -version = "0.9.0" +version = "0.13.1" description = "Python client for the Prometheus monitoring system." category = "main" optional = true -python-versions = "*" +python-versions = ">=3.6" [package.extras] twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.17" +version = "3.0.19" description = "Library for building powerful interactive command lines in Python" category = "main" optional = true @@ -760,23 +719,15 @@ python-versions = "*" [[package]] name = "py" -version = "1.10.0" +version = "1.11.0" description = "library with cross-python path, ini-parsing, io, code, log facilities" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - -[[package]] -name = "pycodestyle" -version = "2.8.0" -description = "Python style guide checker" -category = "dev" -optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pycparser" -version = "2.20" +version = "2.21" description = "C parser in Python" category = "main" optional = true @@ -784,7 +735,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pydantic" -version = "1.8.2" +version = "1.9.0" description = "Data validation and settings management using python 3.6 type hinting" category = "main" optional = false @@ -798,17 +749,9 @@ typing-extensions = ">=3.7.4.3" dotenv = ["python-dotenv (>=0.10.4)"] email = ["email-validator (>=1.0.3)"] -[[package]] -name = "pyflakes" -version = "2.4.0" -description = "passive checker of Python programs" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - [[package]] name = "pygments" -version = "2.8.1" +version = "2.11.2" description = "Pygments is a syntax highlighting package written in Python." category = "main" optional = true @@ -816,19 +759,22 @@ python-versions = ">=3.5" [[package]] name = "pyparsing" -version = "2.4.7" +version = "3.0.7" description = "Python parsing module" category = "main" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = ">=3.6" + +[package.extras] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" -version = "0.17.3" +version = "0.18.0" description = "Persistent/Functional/Immutable data structures" category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" [[package]] name = "pytest" @@ -852,20 +798,9 @@ tomli = ">=1.0.0" [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] -[[package]] -name = "pytest-azurepipelines" -version = "0.8.0" -description = "Formatting PyTest output for Azure Pipelines UI" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - -[package.dependencies] -pytest = ">=3.5.0" - [[package]] name = "pytest-cov" -version = "2.11.1" +version = "2.12.1" description = "Pytest plugin for measuring coverage." category = "dev" optional = false @@ -874,13 +809,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.dependencies] coverage = ">=5.2.1" pytest = ">=4.6" +toml = "*" [package.extras] -testing = ["fields", "hunter", "process-tests (==2.0.2)", "six", "pytest-xdist", "virtualenv"] +testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] [[package]] name = "python-dateutil" -version = "2.8.1" +version = "2.8.2" description = "Extensions to the standard Python datetime module" category = "main" optional = true @@ -891,7 +827,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2021.1" +version = "2022.1" description = "World timezone definitions, modern and historical" category = "main" optional = true @@ -899,7 +835,7 @@ python-versions = "*" [[package]] name = "pywin32" -version = "301" +version = "303" description = "Python for Window Extensions" category = "main" optional = true @@ -907,15 +843,15 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "0.5.7" -description = "Python bindings for the winpty library" +version = "2.0.3" +description = "Pseudo terminal support for Windows from Python." category = "main" optional = true -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "pyzmq" -version = "22.0.3" +version = "22.3.0" description = "Python bindings for 0MQ" category = "main" optional = true @@ -925,43 +861,40 @@ python-versions = ">=3.6" cffi = {version = "*", markers = "implementation_name == \"pypy\""} py = {version = "*", markers = "implementation_name == \"pypy\""} -[[package]] -name = "regex" -version = "2021.3.17" -description = "Alternative regular expression module, to replace re." -category = "dev" -optional = false -python-versions = "*" - [[package]] name = "requests" -version = "2.25.1" +version = "2.27.1" description = "Python HTTP for Humans." category = "main" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +optional = true +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" [package.dependencies] certifi = ">=2017.4.17" -chardet = ">=3.0.2,<5" -idna = ">=2.5,<3" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} urllib3 = ">=1.21.1,<1.27" [package.extras] -security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "send2trash" -version = "1.5.0" +version = "1.8.0" description = "Send file to trash natively under Mac OS X, Windows and Linux." category = "main" optional = true python-versions = "*" +[package.extras] +nativelib = ["pyobjc-framework-cocoa", "pywin32"] +objc = ["pyobjc-framework-cocoa"] +win32 = ["pywin32"] + [[package]] name = "six" -version = "1.15.0" +version = "1.16.0" description = "Python 2 and 3 compatibility utilities" category = "main" optional = false @@ -969,7 +902,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "snowballstemmer" -version = "2.1.0" +version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." category = "main" optional = true @@ -977,7 +910,7 @@ python-versions = "*" [[package]] name = "sphinx" -version = "3.5.2" +version = "3.5.4" description = "Python documentation generator" category = "main" optional = true @@ -987,7 +920,7 @@ python-versions = ">=3.5" alabaster = ">=0.7,<0.8" babel = ">=1.3" colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} -docutils = ">=0.12" +docutils = ">=0.12,<0.17" imagesize = "*" Jinja2 = ">=2.3" packaging = "*" @@ -1032,11 +965,11 @@ test = ["pytest"] [[package]] name = "sphinxcontrib-htmlhelp" -version = "1.0.3" +version = "2.0.0" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" category = "main" optional = true -python-versions = ">=3.5" +python-versions = ">=3.6" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] @@ -1067,7 +1000,7 @@ test = ["pytest"] [[package]] name = "sphinxcontrib-serializinghtml" -version = "1.1.4" +version = "1.1.5" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." category = "main" optional = true @@ -1079,27 +1012,30 @@ test = ["pytest"] [[package]] name = "terminado" -version = "0.9.3" +version = "0.13.0" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." category = "main" optional = true -python-versions = ">=3.6" +python-versions = "*" [package.dependencies] ptyprocess = {version = "*", markers = "os_name != \"nt\""} -pywinpty = {version = ">=0.5", markers = "os_name == \"nt\""} +pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} tornado = ">=4" +[package.extras] +test = ["pytest"] + [[package]] name = "testpath" -version = "0.4.4" +version = "0.6.0" description = "Test utilities for code working with files and commands" category = "main" optional = true -python-versions = "*" +python-versions = ">= 3.5" [package.extras] -test = ["pathlib2"] +test = ["pytest"] [[package]] name = "toml" @@ -1127,12 +1063,16 @@ python-versions = ">= 3.5" [[package]] name = "tqdm" -version = "4.59.0" +version = "4.63.0" description = "Fast, Extensible Progress Meter" category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +[package.dependencies] +colorama = {version = "*", markers = "platform_system == \"Windows\""} +importlib-resources = {version = "*", markers = "python_version < \"3.7\""} + [package.extras] dev = ["py-make (>=0.1.0)", "twine", "wheel"] notebook = ["ipywidgets (>=6)"] @@ -1156,7 +1096,7 @@ test = ["pytest", "mock"] [[package]] name = "typed-ast" -version = "1.4.2" +version = "1.4.3" description = "a fork of Python 2 and 3 ast modules with type comment support" category = "dev" optional = false @@ -1164,7 +1104,7 @@ python-versions = "*" [[package]] name = "typing-extensions" -version = "3.7.4.3" +version = "3.10.0.2" description = "Backported and Experimental Type Hints for Python 3.5+" category = "main" optional = false @@ -1172,14 +1112,14 @@ python-versions = "*" [[package]] name = "urllib3" -version = "1.26.5" +version = "1.26.9" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "main" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] -brotli = ["brotlipy (>=0.6.0)"] +brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] @@ -1201,7 +1141,7 @@ 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