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WARNING: ignoring environment value of R_HOME #38

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grabear opened this issue Oct 19, 2018 · 1 comment

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Priority: Low Status: Review Needed Type: Bug Type: Discussion Type: Maintenance

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grabear commented Oct 19, 2018

After creating and activating an environment, you can install packages. But after installing a package you get errors:

install.packages('edgeR')
WARNING: ignoring environment value of R_HOME

Determine the reason for this error and report anything on this issue.

grabear added Type: Discussion Type: Maintenance Type: Bug Status: Review Needed Priority: Low labels

grabear assigned BrunoGrandePhD, santina, hyounesy, ksbystrom, grabear, sdhutchins, bitttyyyy and ZhiYuh

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santina commented Oct 21, 2018 •

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Possibly due to the environment variable set up in .Renviron file and that installation is not getting into the right directory.

As pointed out in this thread

if test -n "${R_HOME}" && \ 
   test "${R_HOME}" != "${R_HOME_DIR}"; then 
  echo "WARNING: ignoring environment value of R_HOME" 
fi

Things to try:

Set R_HOME_DIR in the .Renviron to see if that helps
Confirm the package does indeed get installed to the right directory in the environment.

BrunoGrandePhD removed their assignment

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