2021-07-29 15:20:13 : Started OrthoFinder version 2.5.4
Command Line: /home/jmaturana/miniconda3/envs/bif2021.1/bin/orthofinder -b /home/jmaturana/Akker/g_akker_faa_outgroup/OrthoFinder/Results_Jul21 -f /home/jmaturana/Akker/glycaniphila_outgroup_faa -M msa -y -t 28 -a 8

WorkingDirectory_Base: /home/jmaturana/Akker/g_akker_faa_outgroup/OrthoFinder/Results_Jul21/../Results_Jul29/WorkingDirectory/

Species used: 
0: DGYMR06203__metabat2_low_PE.047.contigs.faa
1: F157a_European_Toad__metabat2_high_PE.005.contigs.faa
2: GCA_000436395.1_MGS154_genomic.faa
3: GCA_000437075.1_MGS344_genomic.faa
4: GCA_001917295.1_ASM191729v1_genomic.faa
5: GCA_002362435.1_ASM236243v1_genomic.faa
6: GCA_002492685.1_ASM249268v1_genomic.faa
7: GCA_002493465.1_ASM249346v1_genomic.faa
8: GCA_003514565.1_ASM351456v1_genomic.faa
9: GCA_008672035.1_ASM867203v1_genomic.faa
10: GCA_008672205.1_ASM867220v1_genomic.faa
11: GCA_009773845.1_ASM977384v1_genomic.faa
12: GCA_014871965.1_ASM1487196v1_genomic.faa
13: GCA_014871995.1_ASM1487199v1_genomic.faa
14: GCA_014872005.1_ASM1487200v1_genomic.faa
15: GCA_014872035.1_ASM1487203v1_genomic.faa
16: GCA_014872065.1_ASM1487206v1_genomic.faa
17: GCA_014872075.1_ASM1487207v1_genomic.faa
18: GCA_014872105.1_ASM1487210v1_genomic.faa
19: GCA_014872125.1_ASM1487212v1_genomic.faa
20: GCA_014872165.1_ASM1487216v1_genomic.faa
21: GCA_900539575.1_UMGS141_genomic.faa
22: GCA_900539895.1_UMGS181_genomic.faa
23: GCA_900545155.1_UMGS750_genomic.faa
24: GCA_900752515.1_ERS235621_6_genomic.faa
25: GCA_900759685.1_ERS608607_23_genomic.faa
26: GCA_900765745.1_SRS294966_17_genomic.faa
27: GCA_905193715.1_ERR260257-mag-bin.6_genomic.faa
28: GCA_905197035.1_ERR2013654-mag-bin.36_genomic.faa
29: GCA_905200125.1_SRR7721894-mag-bin.53_genomic.faa
30: GCA_905200945.1_ERR414247-mag-bin.14_genomic.faa
31: GCA_905205055.1_SRR413729-mag-bin.10_genomic.faa
32: GCA_905205915.1_ERR1305901-mag-bin.46_genomic.faa
33: GCA_905210405.1_ERR321569-mag-bin.26_genomic.faa
34: GCA_905210615.1_ERR321622-mag-bin.18_genomic.faa
35: GCF_000020225.1_ASM2022v1_genomic.faa
#36: GCF_000172155.1_ASM17215v1_genomic.faa
37: GCF_000723745.2_PRJEB6027_Urmite_genomic.faa
38: GCF_001578645.1_ASM157864v1_genomic.faa
39: GCF_001580195.1_ASM158019v1_genomic.faa
40: GCF_001647615.1_ASM164761v1_genomic.faa
41: GCF_001688765.2_ASM168876v2_genomic.faa
42: GCF_002161325.1_ASM216132v1_genomic.faa
43: GCF_002201495.1_ASM220149v1_genomic.faa
44: GCF_002884915.1_ASM288491v1_genomic.faa
45: GCF_002884975.1_ASM288497v1_genomic.faa
46: GCF_002884995.1_ASM288499v1_genomic.faa
47: GCF_002885015.1_ASM288501v1_genomic.faa
48: GCF_002885025.1_ASM288502v1_genomic.faa
49: GCF_002885055.1_ASM288505v1_genomic.faa
50: GCF_002885075.1_ASM288507v1_genomic.faa
51: GCF_002885095.1_ASM288509v1_genomic.faa
52: GCF_002885155.1_ASM288515v1_genomic.faa
53: GCF_002885165.1_ASM288516v1_genomic.faa
54: GCF_002885195.1_ASM288519v1_genomic.faa
55: GCF_002885215.1_ASM288521v1_genomic.faa
56: GCF_002885235.1_ASM288523v1_genomic.faa
57: GCF_002885255.1_ASM288525v1_genomic.faa
58: GCF_002885265.1_ASM288526v1_genomic.faa
59: GCF_002885295.1_ASM288529v1_genomic.faa
60: GCF_002885315.1_ASM288531v1_genomic.faa
61: GCF_002885335.1_ASM288533v1_genomic.faa
62: GCF_002885355.1_ASM288535v1_genomic.faa
63: GCF_002885375.1_ASM288537v1_genomic.faa
64: GCF_002885395.1_ASM288539v1_genomic.faa
65: GCF_002885415.1_ASM288541v1_genomic.faa
66: GCF_002885425.1_ASM288542v1_genomic.faa
67: GCF_002885455.1_ASM288545v1_genomic.faa
68: GCF_002885465.1_ASM288546v1_genomic.faa
69: GCF_002885515.1_ASM288551v1_genomic.faa
70: GCF_002885535.1_ASM288553v1_genomic.faa
71: GCF_002885575.1_ASM288557v1_genomic.faa
72: GCF_002885595.1_ASM288559v1_genomic.faa
73: GCF_002885615.1_ASM288561v1_genomic.faa
74: GCF_002885625.1_ASM288562v1_genomic.faa
75: GCF_002885655.1_ASM288565v1_genomic.faa
76: GCF_002885675.1_ASM288567v1_genomic.faa
77: GCF_002885695.1_ASM288569v1_genomic.faa
78: GCF_002885715.1_ASM288571v1_genomic.faa
79: GCF_003716915.1_ASM371691v1_genomic.faa
80: GCF_003716935.1_ASM371693v1_genomic.faa
81: GCF_003716955.1_ASM371695v1_genomic.faa
82: GCF_003716975.1_ASM371697v1_genomic.faa
83: GCF_004015005.1_ASM401500v1_genomic.faa
84: GCF_004015025.1_ASM401502v1_genomic.faa
85: GCF_004015045.1_ASM401504v1_genomic.faa
86: GCF_004015065.1_ASM401506v1_genomic.faa
87: GCF_004015085.1_ASM401508v1_genomic.faa
88: GCF_004015105.1_ASM401510v1_genomic.faa
89: GCF_004015125.1_ASM401512v1_genomic.faa
90: GCF_004015205.1_ASM401520v1_genomic.faa
91: GCF_004015225.1_ASM401522v1_genomic.faa
92: GCF_004015245.1_ASM401524v1_genomic.faa
93: GCF_004015265.1_ASM401526v1_genomic.faa
94: GCF_004015285.1_ASM401528v1_genomic.faa
95: GCF_004015305.1_ASM401530v1_genomic.faa
96: GCF_004015325.1_ASM401532v1_genomic.faa
97: GCF_004015345.1_ASM401534v1_genomic.faa
98: GCF_004104435.1_ASM410443v1_genomic.faa
99: GCF_004168105.1_ASM416810v1_genomic.faa
100: GCF_004319565.1_ASM431956v1_genomic.faa
101: GCF_008000975.1_ASM800097v1_genomic.faa
102: GCF_008422275.1_ASM842227v1_genomic.faa
103: GCF_008422615.1_ASM842261v1_genomic.faa
104: GCF_008422635.1_ASM842263v1_genomic.faa
105: GCF_008422665.1_ASM842266v1_genomic.faa
106: GCF_008422685.1_ASM842268v1_genomic.faa
107: GCF_008422695.1_ASM842269v1_genomic.faa
108: GCF_008422705.1_ASM842270v1_genomic.faa
109: GCF_008422715.1_ASM842271v1_genomic.faa
110: GCF_008422765.1_ASM842276v1_genomic.faa
111: GCF_008422775.1_ASM842277v1_genomic.faa
112: GCF_008422795.1_ASM842279v1_genomic.faa
113: GCF_008422805.1_ASM842280v1_genomic.faa
114: GCF_008422815.1_ASM842281v1_genomic.faa
115: GCF_008422865.1_ASM842286v1_genomic.faa
116: GCF_008422875.1_ASM842287v1_genomic.faa
117: GCF_008422885.1_ASM842288v1_genomic.faa
118: GCF_008422895.1_ASM842289v1_genomic.faa
119: GCF_008422925.1_ASM842292v1_genomic.faa
120: GCF_008422965.1_ASM842296v1_genomic.faa
121: GCF_008422985.1_ASM842298v1_genomic.faa
122: GCF_008422995.1_ASM842299v1_genomic.faa
123: GCF_008423015.1_ASM842301v1_genomic.faa
124: GCF_008423035.1_ASM842303v1_genomic.faa
125: GCF_008423065.1_ASM842306v1_genomic.faa
126: GCF_008423085.1_ASM842308v1_genomic.faa
127: GCF_008423095.1_ASM842309v1_genomic.faa
128: GCF_008423115.1_ASM842311v1_genomic.faa
129: GCF_008423135.1_ASM842313v1_genomic.faa
130: GCF_008423175.1_ASM842317v1_genomic.faa
131: GCF_008423185.1_ASM842318v1_genomic.faa
132: GCF_008423215.1_ASM842321v1_genomic.faa
133: GCF_008423245.1_ASM842324v1_genomic.faa
134: GCF_008423265.1_ASM842326v1_genomic.faa
135: GCF_008423275.1_ASM842327v1_genomic.faa
136: GCF_008423295.1_ASM842329v1_genomic.faa
137: GCF_008423325.1_ASM842332v1_genomic.faa
138: GCF_008423335.1_ASM842333v1_genomic.faa
139: GCF_008423365.1_ASM842336v1_genomic.faa
140: GCF_008423375.1_ASM842337v1_genomic.faa
141: GCF_008423385.1_ASM842338v1_genomic.faa
142: GCF_008423405.1_ASM842340v1_genomic.faa
143: GCF_008423445.1_ASM842344v1_genomic.faa
144: GCF_008423455.1_ASM842345v1_genomic.faa
145: GCF_009663785.1_ASM966378v1_genomic.faa
146: GCF_009731575.1_ASM973157v1_genomic.faa
147: GCF_010223015.1_ASM1022301v1_genomic.faa
148: GCF_010223075.1_ASM1022307v1_genomic.faa
149: GCF_010223095.1_ASM1022309v1_genomic.faa
150: GCF_010223115.1_ASM1022311v1_genomic.faa
151: GCF_010223135.1_ASM1022313v1_genomic.faa
152: GCF_010223155.1_ASM1022315v1_genomic.faa
153: GCF_010223175.1_ASM1022317v1_genomic.faa
154: GCF_010223195.1_ASM1022319v1_genomic.faa
155: GCF_010223255.1_ASM1022325v1_genomic.faa
156: GCF_010223405.1_ASM1022340v1_genomic.faa
157: GCF_010223575.1_ASM1022357v1_genomic.faa
158: GCF_010229055.1_ASM1022905v1_genomic.faa
159: GCF_010229495.1_ASM1022949v1_genomic.faa
160: GCF_010229695.1_ASM1022969v1_genomic.faa
161: GCF_010229955.1_ASM1022995v1_genomic.faa
162: GCF_010230155.1_ASM1023015v1_genomic.faa
163: GCF_010230375.1_ASM1023037v1_genomic.faa
164: GCF_010230515.1_ASM1023051v1_genomic.faa
165: GCF_010230725.1_ASM1023072v1_genomic.faa
166: GCF_010230935.1_ASM1023093v1_genomic.faa
167: GCF_010231195.1_ASM1023119v1_genomic.faa
168: GCF_010509235.1_ASM1050923v1_genomic.faa
169: GCF_016697425.1_ASM1669742v1_genomic.faa
170: GCF_017504145.1_ASM1750414v1_genomic.faa
171: GCF_017566105.1_ASM1756610v1_genomic.faa
172: GCF_017570425.1_ASM1757042v1_genomic.faa
173: GCF_017570485.1_ASM1757048v1_genomic.faa
174: GCF_017570505.1_ASM1757050v1_genomic.faa
175: GCF_017570525.1_ASM1757052v1_genomic.faa
176: GCF_900184845.1_Chimpanzee_1.fasta_genomic.faa
177: GCF_900184905.1_Siamang.fasta_genomic.faa
178: GCF_900184985.1_Mouse_1_89.fasta_genomic.faa
179: GCF_900185025.1_MG2_JASPER.fasta_genomic.faa
180: MGYG-HGUT-00870.faa
181: MGYG-HGUT-01881.faa
182: MGYG-HGUT-01921.faa
183: MGYG-HGUT-02378.faa
184: MGYG-HGUT-02452.faa
185: MGYG-HGUT-02453.faa
186: MGYG-HGUT-02454.faa
187: MGYG-HGUT-02584.faa
188: MGYG-HGUT-03413.faa
189: MGYG-HGUT-03447.faa
190: MGYG-HGUT-04532.faa
191: R28__metabat2_low_PE.030.contigs.faa
192: X355_Hoffmanns_Two_toed_Sloth__metabat2_high_PE.021.contigs.faa
193: bin3c.174.contigs.faa
194: bin3c.184.contigs.faa
195: bin3c.225.contigs.faa
196: GCF_001683795.1_ASM168379v1_genomic.faa
197: GCF_014651675.1_ASM1465167v1_genomic.faa
198: GCF_900097105.1_WK001_cds_from_genomic.faa

FN_Orthogroups: /home/jmaturana/Akker/g_akker_faa_outgroup/OrthoFinder/Results_Jul21/../Results_Jul29/WorkingDirectory/clusters_OrthoFinder_I1.5.txt_id_pairs.txt
WorkingDirectory_Trees: /home/jmaturana/Akker/g_akker_faa_outgroup/OrthoFinder/Results_Jul21/../Results_Jul29/WorkingDirectory/
2021-07-29 18:57:19 : OrthoFinder run completed