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gmdb_list_components_by_gmoids.md

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List growth media components with the given GMO IDs (for pagination)

Show a list of growth media components with the given GMO ID(s).

Parameters

  • gmo_ids GMO ID
    • default: GMO_001010,GMO_001155,GMO_001657
    • examples: GMO_001250,GMO_001010,GMO_001047
  • limit limit
    • default: 10
  • offset offset
    • default: 0

Endpoint

http://togomedium.org/sparql

gmo_id_ary Parse_argument

(gmo_ids) => {
  const gmo_id_ary = gmo_ids.gmo_ids.split(",").map((e, i, array)=>{
    return '\"' + e + '\"'
  }).join(" ");
  return gmo_id_ary;
};

count count results

PREFIX gmo: <http://purl.jp/bio/10/gmo/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX dcterms: <http://purl.org/dc/terms/>

SELECT
  (COUNT(DISTINCT ?gmo_id) AS ?total) ?limit ?offset
FROM <http://togomedium.org/gmo>
WHERE {
  VALUES ?gmo_id { {{gmo_id_ary}} } .
  ?c rdfs:subClassOf+ gmo:GMO_000002 ;
     dcterms:identifier ?gmo_id ;
     skos:prefLabel ?l
   OPTIONAL {
     ?c skos:altLabel ?alt_label
     FILTER(LANG(?alt_label) = "en")
   }
  BIND("{{limit}}" AS ?limit)
  BIND("{{offset}}" AS ?offset)
}

result retrieve GMO component information

PREFIX gmo: <http://purl.jp/bio/10/gmo/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX dcterms: <http://purl.org/dc/terms/>

SELECT
  ?gmo_id
  (SAMPLE(?c) AS ?component)
  (SAMPLE(?l) AS ?label)
  (GROUP_CONCAT(?alt_label; SEPARATOR = ", ") AS ?alt_labels)
FROM <http://togomedium.org/gmo>
WHERE {
  VALUES ?gmo_id { {{gmo_id_ary}} } .
  ?c rdfs:subClassOf+ gmo:GMO_000002 ;
     dcterms:identifier ?gmo_id ;
     skos:prefLabel ?l
   OPTIONAL {
     ?c skos:altLabel ?alt_label
     FILTER(LANG(?alt_label) = "en")
   }
}
GROUP BY ?gmo_id
LIMIT {{limit}}
OFFSET {{offset}}

Output

({
  json({result, count}) {

    let rows = result.results.bindings;
    let count_rows = count.results.bindings[0];
    let components = {};
    components.contents = [];

    components.total = 0;
    components.limit = 0;
    components.offset = 0;

    if (rows.length == 0) {
      return components;
    }
    for (let i = 0; i < rows.length ;i++) {
      if (rows[i].alt_labels && rows[i].alt_labels.value.length > 0) {
        components.contents.push({
          gmo_id: {label: rows[i].gmo_id.value,
                   href: "/component/" + rows[i].gmo_id.value},
          name: rows[i].label.value + "; " + rows[i].alt_labels.value
        });
      } else {
        components.contents.push({
          gmo_id: {label: rows[i].gmo_id.value,
                   href: "/component/" + rows[i].gmo_id.value},
          name: rows[i].label.value
        });
      }
    }

    components.columns = [];
    components.columns.push({key: "gmo_id", label: "GMO ID"});
    components.columns.push({key: "name", label: "Name"});
    components.total = count_rows.total.value ;
    components.limit = count_rows.limit.value ;
    components.offset = count_rows.offset.value ;
    return components;
  }
})