sudo rm /var/lib/apt/lists/lock
sudo apt-get update
sudo apt install git
sudo apt-get install python3-pip
sudo apt-get install python3-pyqtgraph
sudo apt-get install python3-pyqt5
pip3 install --upgrade setuptools pip
pip3 install opencv-python==4.4.0.46 opencv-contrib-python==4.4.0.46
pip3 install qtpy pyserial lxml imutils scipy pandas tifffile scikit-image==0.18.2
pip3 install torch==1.8.1+cu111 torchvision==0.9.1+cu111 torchaudio==0.8.1 -f https://download.pytorch.org/whl/torch_stable.html
pip3 install git+https://github.com/elerac/polanalyser
pip3 install numba
Note that desipte CUDA 11.2 is installed with nvidia-driver-460, the above pytorch installation still works. For up-to-date pytorch release, check https://pytorch.org/get-started/locally/.
If you're using The Imaging Source cameras, follow instructions on https://github.com/TheImagingSource/tiscamera
git clone https://github.com/TheImagingSource/tiscamera.git
cd tiscamera
# only works on Debian based systems like Ubuntu
sudo ./scripts/install-dependencies.sh --compilation --runtime
mkdir build
cd build
# With ARAVIS:
cmake -DBUILD_ARAVIS=ON ..
# Without ARAVIS
cmake -DBUILD_ARAVIS=OFF ..
make
sudo make install
If you're using Daheng cameras, follow instructions in the drivers and libraries/daheng camera folder. If the repo is cloned to the home directory, you can use the following (assuming you have cloned this repo to the home folder and the user name is prakashlab - replace it with your username).
cd '/home/prakashlab/gravitymachine-research/software/drivers and libraries/daheng camera/Galaxy_Linux-x86_Gige-U3_32bits-64bits_1.2.1911.9122'
./Galaxy_camera.run
cd '/home/prakashlab/gravitymachine-research/software/drivers and libraries/daheng camera/Galaxy_Linux_Python_1.0.1905.9081'
cd api
python3 setup.py build
sudo python3 setup.py install
sudo usermod -aG dialout $USER
Reboot the computer for the change to take effect.