diff --git a/src/delly.cpp b/src/delly.cpp index e562a8b..067be52 100644 --- a/src/delly.cpp +++ b/src/delly.cpp @@ -43,19 +43,19 @@ displayUsage() { std::cerr << "Long-read SV calling:" << std::endl; std::cerr << " lr long-read SV discovery" << std::endl; std::cerr << std::endl; - std::cerr << "Pan-genome based SV calling (work-in-progress):" << std::endl; - std::cerr << " pg pan-genome SV discovery" << std::endl; - std::cerr << std::endl; - std::cerr << "Assembly-based SV calling (work-in-progress):" << std::endl; - std::cerr << " asm assembly SV site discovery" << std::endl; - std::cerr << std::endl; + //std::cerr << "Pan-genome based SV calling (work-in-progress):" << std::endl; + //std::cerr << " pg pan-genome SV discovery" << std::endl; + //std::cerr << std::endl; + //std::cerr << "Assembly-based SV calling (work-in-progress):" << std::endl; + //std::cerr << " asm assembly SV site discovery" << std::endl; + //std::cerr << std::endl; std::cerr << "Copy-number variant calling:" << std::endl; std::cerr << " cnv discover and genotype copy-number variants" << std::endl; std::cerr << " classify classify somatic or germline copy-number variants" << std::endl; - std::cerr << std::endl; - std::cerr << "Multi-sample VCF operations:" << std::endl; - std::cerr << " markdup mark duplicate SV sites based on SV allele and GT concordance" << std::endl; - std::cerr << " compvcf compare multi-sample VCF file to a ground truth VCF file" << std::endl; + //std::cerr << std::endl; + //std::cerr << "Multi-sample VCF operations:" << std::endl; + //std::cerr << " markdup mark duplicate SV sites based on SV allele and GT concordance" << std::endl; + //std::cerr << " compvcf compare multi-sample VCF file to a ground truth VCF file" << std::endl; //std::cerr << "Deprecated:" << std::endl; //std::cerr << " dpe double paired-end signatures" << std::endl; //std::cerr << " chimera ONT chimera flagging" << std::endl; diff --git a/src/version.h b/src/version.h index 093b61c..28437b2 100644 --- a/src/version.h +++ b/src/version.h @@ -5,7 +5,7 @@ namespace torali { - std::string dellyVersionNumber = "1.1.7"; + std::string dellyVersionNumber = "1.1.8"; inline void printTitle(std::string const& title)