index.Rmd

---
title: "Indications"
author: "Daniel Himmelstein, Leo Brueggeman, Sergio Baranzini"
date: "February 16, 2015"
output:
  html_document:
    theme: cosmo
    highlight: pygments
    includes:
      in_header: include/in_header.html
      before_body: include/before_body.html
      after_body: include/after_body.html
csl: cite-styles/plos-mod.csl
bibliography: references.bib
---

```{r global_options, include=FALSE}
knitr::opts_chunk$set(
  fig.width = 10,
  fig.path = 'figures/',
  warning = FALSE,
  message = FALSE,
  fig.retina = 2
)
```

```{r, include=FALSE}
# Set up citation management
library(knitcitations)
knitcitations::cleanbib()
knitcitations::cite_options(citation_format = 'pandoc', cite.style = 'authoryear', hyperlink = 'to.bib', super = TRUE)
```

Here, we parse and analyze several indications resources:

+ [LabeledIn](labeledin) -- a manually curated resource `r knitcitations::citep('10.1016/j.jbi.2014.08.004')`.
+ [MEDI](medi) -- a resource that combines extracts indications from four resources RxNORM, MedlinePlus, SIDER 2, and Wikipedia `r knitcitations::citep('10.1136/amiajnl-2012-001431')`.

# References
```{r, include=FALSE}
knitcitations::write.bibtex(file = 'references.bib')
```