Remove factor of 2 error in cosym target weights #1635
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@@ Coverage Diff @@
## main #1635 +/- ##
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Coverage 66.63% 66.63%
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Files 616 616
Lines 68950 68949 -1
Branches 9600 9601 +1
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+ Hits 45944 45945 +1
+ Misses 21070 21068 -2
Partials 1936 1936 |
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Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636)
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Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636)
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Features -------- - ``dials.cosym``: Significantly faster via improved computation of functional, gradients and curvatures (#1639) - ``dials.integrate``: Added parameter ``valid_foreground_threshold=``, to require a minimum fraction of valid pixels before profile fitting is attempted (#1640) Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636) - ``dials.integrate``: Reject reflections with a high number of invalid pixels, which were being integrated since 3.4.0. This restores better merging statistics, and prevents many reflections being incorrect profiled as zero-intensity. (#1640)
DiamondLightSource-build-server
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Features -------- - ``dials.cosym``: Significantly faster via improved computation of functional, gradients and curvatures (#1639) - ``dials.integrate``: Added parameter ``valid_foreground_threshold=``, to require a minimum fraction of valid pixels before profile fitting is attempted (#1640) Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636) - ``dials.integrate``: Reject reflections with a high number of invalid pixels, which were being integrated since 3.4.0. This restores better merging statistics, and prevents many reflections being incorrect profiled as zero-intensity. (#1640)
DiamondLightSource-build-server
added a commit
that referenced
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Apr 1, 2021
Features -------- - ``dials.cosym``: Significantly faster via improved computation of functional, gradients and curvatures (#1639) - ``dials.integrate``: Added parameter ``valid_foreground_threshold=``, to require a minimum fraction of valid pixels before profile fitting is attempted (#1640) Bugfixes -------- - ``dials.cosym``: Cache cases where Rij is undefined, rather than recalculating each time. This can have significant performance benefits when handling large numbers of sparse data sets. (#1634) - ``dials.cosym``: Fix factor of 2 error when calculating target weights (#1635) - ``dials.cosym``: Fix broken ``engine=scipy`` option (#1636) - ``dials.integrate``: Reject reflections with a high number of invalid pixels, which were being integrated since 3.4.0. This restores better merging statistics, and prevents many reflections being incorrect profiled as zero-intensity. (#1640) - Fix rare crash in symmetry calculations when no resolution limit could be calculated (#1641)
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Introduced in 96fb05d and partially fixed (for rij_matrix only) in f01e5c9.
Calculated standard_error weights using numpy operations instead of inside tight Python loop.