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Index error when running DCC #7
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Hi Shobana, would it be possible to get a minimal sample data collection in order to reproduce this error? Cheers, |
Hi, Apologies for my late reply. Sure I can share the dataset. I have attached my out/error log here I am getting this error: IndexError: list index out of range Would this log file suffice or would you like the input fastqs as well? If so I can share it in dropbox to your email id. Thanks, |
I met the error too. |
Hi @hydraphenix, thank you for your input, it is generally a good idea to keep packages updated, I did not notice any errors with newer numpy versions. @ShobanaS88: Cheers, |
@tjakobi |
Thank you @hydraphenix and @tjakobi for the suggestions. I was able to run DCC with the latest commit as you mentioned. Thank you once again! Shobana |
Thanks for your feedback @ShobanaS88! I'll close the issue since the problem could be solved. In case of further problems, don't hesitate to open a new issue. Cheers, |
Hi,
I am getting this below error when running DCC. Could you help resolve this issue?
Traceback (most recent call last):
File "/home/ssekar/tools/circRNA/DCC-0.3.2/DCC/main.py", line 507, in
main()
File "/home/ssekar/tools/circRNA/DCC-0.3.2/DCC/main.py", line 292, in main
filt.intersectLeftandRightRegions(nonrep_left,nonrep_right,indx0,count0)
File "/home/ssekar/tools/circRNA/DCC-0.3.2/DCC/circFilter.py", line 119, in intersectLeftandRightRegions
nonrep = np.concatenate((indx0[position],count0[position]),axis=1)
IndexError: axis 1 out of bounds [0, 1)
Thanks in advance,
Shobana
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