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Combine the results #72
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Hi @JunmingH, you would have to combing the different output files, into one set of files with multiple columns for each of the samples. However, the rows will be different, too, since not all circRNAs will be detect in each sample. I would recommend to try to get all sample processed by DCC in one run, possibly with -T 2 or 2 to not create too much CPU and memory load. Cheers, |
Hi @tjakobi Tobias, I was trying to using server to processing the data but still gave me the error, |
Could you please attach the log file of that DCC run? |
samplesheet.txt |
@tjakobi Can you give me some idea for this? |
Hi @JunmingH, I am relatively sure that your command line is not correct, see the following error:
Here the Junctions files should be scanned, not the samplesheet. Can you please provide your complete command line? Cheers, |
@tjakobi Hi Tobias, Attached is~ |
The samplesheet and the command line look okay - however DCC seems to think there is only one input file called samplesheet. Your command line is not the command line that DCC itself prints out, do you have the complete DCC log, i.e. Cheers, |
@tjakobi Sure, |
Hi @JunmingH, from the log file you can see that the actual command line is
While it should be
The @ for the input is missing. Cheers, |
Hi @tjakobi Tobias Thanks for your help! It's working right now! |
Hi I was trying to combine the results together. since there have have issue when I integrate those bam files together. Right now I have CircCoordinates CircRNACount CircSkipJunctions LinearCount Four files for each subjects. I was wondering how could I cimbine each subjects together. using which column to match them?
Thanks!
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