ERROR in DCC running: chimeric.out.juntcion probably corrupt

[fenguita]

Hi

I am trying to run DCC over a pre-aligned bunch of samples. When the script starts I got an annoying error complaining about the features present in my chimeric.out.junction files:

WARNING: File /Chimeric.out.junction, line 67891 does not contain all features.
WARNING: Chimeric.out.junction is probably corrupt.

When I looked at the chimeric.out.junction file, the line that the software indicates is the last line of the file. What are the features that DCC is looking at?... Please let me know what I am doing wrong.

Best

[tjakobi]

Hi @fenguita,

could you either paste the specified line plus a few extra lines around or even better upload the whole file here?

Cheers,
Tobias