UPD/FIX various

dieterich-lab · Aug 9, 2024 · 00cea3d · 00cea3d
1 parent d297d0e
commit 00cea3d
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Showing 6 changed files with 26 additions and 4 deletions.
diff --git a/client/src/components/modification/MicroRNASiteTable.vue b/client/src/components/modification/MicroRNASiteTable.vue
@@ -95,7 +95,11 @@ function load(event) {
     <Column field="source" header="Source"></Column>
     <Column field="start" header="Start"></Column>
     <Column field="end" header="End"></Column>
-    <Column field="score" header="Score"></Column>
+    <Column field="score">
+      <template #header>
+        <span v-tooltip.top="'context++ score percentile'">Score</span>
+      </template>
+    </Column>
     <Column field="strand" header="Strand"></Column>
   </DataTable>
 </template>
diff --git a/client/src/components/modification/RBPSiteTable.vue b/client/src/components/modification/RBPSiteTable.vue
@@ -98,7 +98,11 @@ function load(event) {
     <Column field="source" header="Source"></Column>
     <Column field="start" header="Start"></Column>
     <Column field="end" header="End"></Column>
-    <Column field="score" header="Score"></Column>
+    <Column field="score">
+      <template #header>
+        <span v-tooltip.top="'MSS score'">Score</span>
+      </template>
+    </Column>
     <Column field="strand" header="Strand"></Column>
   </DataTable>
 </template>
diff --git a/client/src/components/ui/DatasetSelectionMulti.vue b/client/src/components/ui/DatasetSelectionMulti.vue
@@ -51,7 +51,16 @@ function getEmptyMessage() {
     :selectionLimit="selectLimit"
     :emptyMessage="getEmptyMessage()"
     filter
-    :filterFields="['dataset_id', 'dataset_title', 'dataset_info']"
+    :filterFields="[
+      'dataset_id',
+      'dataset_title',
+      'project_title',
+      'project_id',
+      'rna',
+      'modomics_sname',
+      'cto',
+      'tech'
+    ]"
     optionValue="dataset_id"
     optionLabel="dataset_id"
     :placeholder="placeholder"

diff --git a/client/src/views/SearchView.vue b/client/src/views/SearchView.vue
@@ -406,7 +406,7 @@ onMounted(() => {
           ref="dt"
           :exportFilename="getFileName()"
           lazy
-          paginator
+          :paginator="true"
           :totalRecords="totalRecords"
           :loading="loading"
           :first="first"
@@ -416,6 +416,8 @@ onMounted(() => {
           removableSort
           sortMode="multiple"
           stripedRows
+          paginatorTemplate="FirstPageLink PrevPageLink CurrentPageReport NextPageLink LastPageLink"
+          currentPageReportTemplate="Showing {first} to {last} of {totalRecords} records"
         >
           <template #header>
             <div style="text-align: right">
@@ -427,6 +429,7 @@ onMounted(() => {
                 raised
                 @click="onExport($event)"
                 :disabled="disabled"
+                v-tooltip.top="'Export current view'"
               />
             </div>
           </template>

diff --git a/server/src/scimodom/services/exporter.py b/server/src/scimodom/services/exporter.py
@@ -109,6 +109,7 @@ def _generate_header(self, dataset: Dataset):
         yield f"#bioinformatics_workflow={_or_default(dataset.bioinformatics_workflow, '')}\n"
         yield f"#experiment={_or_default(dataset.experiment, '')}\n"
         yield f"#external_source={_or_default(dataset.external_source, '')}\n"
+        yield f"#internal_source=EUFID:{dataset.id} SMID:{dataset.project_id}\n"
         yield "#chrom\tchromStart\tchromEnd\tname\tscore\tstrand\tthickStart\tthickEnd\titemRgb\tcoverage\tfrequency\n"
 
     def _generate_records(self, dataset: Dataset):

diff --git a/server/tests/unit/services/test_exporter.py b/server/tests/unit/services/test_exporter.py
@@ -23,6 +23,7 @@ def test_exporter(Session, dataset):  # noqa
 #bioinformatics_workflow=wf1
 #experiment=experiment 1
 #external_source=ext. source 1
+#internal_source=EUFID:d1 SMID:12345678
 #chrom\tchromStart\tchromEnd\tname\tscore\tstrand\tthickStart\tthickEnd\titemRgb\tcoverage\tfrequency
 17\t100001\t100002\tm6A\t1000\t+\t100001\t100002\t128,128,0\t43\t100
 Y\t200001\t200002\tm5C\t900\t-\t200001\t200002\t0,0,128\t44\t99