- Set the species and testing in
Code/config.yml
- Run
Code/prep_data_species.R
to organize data, augment, set starting values - Run
Code/run_jags.R
to implement JAGS in parallel on 8 cores - Use
Code/mcmc_check.R
to visualize posteriors and check ESS and$\hat{R}$ - The
mcmc_Analysis.Rmd
file can be used to create figures and tables (refine & turn into supplemental materials?)