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Thanks for filing this - I'm not sure if it's possible to fix this, however - it's not watertight to make assumptions about renaming based on the state of the constraints: Fundamentally it's impossible to tell the difference between a new and renamed column when only looking at the schema.
Adding configurability for renaming however is a possible future addition. In the short term, I'll create ticket for this.
AS-IS: when we rename the primary key then drop & create statements are generated
expected behavior: rename the primary key / index / constraint if the type has not been changed
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