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Question on deconvolution using RCTD #219

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wzdrgi opened this issue Nov 1, 2024 · 0 comments
Open

Question on deconvolution using RCTD #219

wzdrgi opened this issue Nov 1, 2024 · 0 comments

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@wzdrgi
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wzdrgi commented Nov 1, 2024

RCTD is a very wonderful piece of work and I have recently used RCTD to deconvolve my spatial transcriptomic data, but the inputs to the reference dataset have also raised a question for me. It is very difficult for the spatial transcriptomic data to appear identical to the reference dataset in terms of cell types, so I am curious to know how RCTD manages cell types that are present in the spatial data but absent in the reference dataset. Looking forward to your reply!

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