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pom.xml
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pom.xml
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<!--
~ Copyright 2017 OICR
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>swagger-java-zenodo-client</artifactId>
<packaging>jar</packaging>
<name>swagger-java-zenodo-client</name>
<groupId>io.dockstore</groupId>
<version>2.1.4-SNAPSHOT</version>
<properties>
<github.url>scm:git:git@github.com:dockstore/swagger-java-zenodo-client.git</github.url>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<dockstore-core.version>1.16.0-alpha.13</dockstore-core.version>
<maven-failsafe.version>2.21.0</maven-failsafe.version>
<maven-surefire.version>3.4.0</maven-surefire.version>
<javadocExecutable>${java.home}/bin/javadoc</javadocExecutable>
<jersey-version>3.0.11</jersey-version>
</properties>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>io.dockstore</groupId>
<artifactId>bom-internal</artifactId>
<type>pom</type>
<version>${dockstore-core.version}</version>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<repositories>
<repository>
<id>artifacts.oicr.on.ca</id>
<name>artifacts.oicr.on.ca</name>
<url>https://artifacts.oicr.on.ca/artifactory/collab-release</url>
</repository>
<repository>
<id>apache-releases</id>
<name>Apache Releases repository</name>
<url>https://repository.apache.org/content/repositories/releases/</url>
</repository>
</repositories>
<scm>
<connection>${github.url}</connection>
<developerConnection>${github.url}</developerConnection>
<url>${github.url}</url>
<tag>swagger-java-bitbucket-client-2.0.0</tag>
</scm>
<licenses>
<license>
<name>Apache Software License, Version 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0</url>
</license>
</licenses>
<distributionManagement>
<repository>
<id>central</id>
<name>artifacts.oicr.on.ca-releases</name>
<url>https://artifacts.oicr.on.ca/artifactory/collab-release</url>
</repository>
</distributionManagement>
<build>
<pluginManagement>
<plugins>
<!-- https://github.com/jacoco/jacoco/pull/760 -->
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.5</version>
</plugin>
<plugin>
<groupId>com.googlecode.maven-download-plugin</groupId>
<artifactId>download-maven-plugin</artifactId>
<version>1.4.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-scm-publish-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<release>17</release>
<showDeprecation>true</showDeprecation>
<forceJavacCompilerUse>true</forceJavacCompilerUse>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.1.1</version>
<configuration>
<archive>
<manifest>
<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
</manifest>
</archive>
<!-- exclude logback.xml -->
<excludes>
<exclude>**/logback.xml</exclude>
</excludes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<version>3.1.1</version>
<dependencies>
<dependency>
<groupId>com.puppycrawl.tools</groupId>
<artifactId>checkstyle</artifactId>
<!-- codacy currently using 8.34 -->
<version>8.34</version>
</dependency>
</dependencies>
<configuration>
<configLocation>checkstyle.xml</configLocation>
<suppressionsLocation>checkstyle-suppressions.xml</suppressionsLocation>
<includeTestSourceDirectory>true</includeTestSourceDirectory>
<includeTestResources>true</includeTestResources>
<includeResources>true</includeResources>
</configuration>
</plugin>
<plugin>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.3.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.2.1</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-clean-plugin</artifactId>
<version>3.1.0</version>
<configuration>
<filesets>
<fileset>
<directory>datastore</directory>
</fileset>
<fileset>
<directory>cromwell-executions</directory>
</fileset>
<fileset>
<directory>cromwell-input</directory>
</fileset>
<fileset>
<directory>cromwell-workflow-logs</directory>
</fileset>
<fileset>
<directory>.</directory>
<includes>
<include>Cromwell.stderr.txt</include>
<include>Cromwell.stdout.txt</include>
</includes>
</fileset>
</filesets>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.8.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-install-plugin</artifactId>
<version>2.5.2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<version>3.7.1</version>
</plugin>
<!-- fix at 2.7 until a solution to symbolic links not being copied is ready -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.7</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven-surefire.version}</version>
<configuration>
<reportFormat>plain</reportFormat>
<excludedGroups>${excludeGroups}</excludedGroups>
<skipTests>${skipTests}</skipTests>
<!-- enforce that tests should be independent -->
<runOrder>random</runOrder>
<!-- re-run flaky tests once -->
<rerunFailingTestsCount>1</rerunFailingTestsCount>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>${maven-failsafe.version}</version>
<configuration>
<reportFormat>plain</reportFormat>
<excludedGroups>${excludeGroups}</excludedGroups>
<!-- enforce that tests should be independent -->
<runOrder>random</runOrder>
<!-- re-run flaky tests once -->
<rerunFailingTestsCount>1</rerunFailingTestsCount>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.3</version>
</plugin>
<plugin>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs-maven-plugin</artifactId>
<version>4.5.3.0</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>3.2.1</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<transformers>
<!-- Akka used by Cromwell expects a consistant reference.conf file. Also order matters, so keep it first in the list of transformers -->
<transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
<resource>reference.conf</resource>
</transformer>
</transformers>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<version>3.0.0-M3</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>net.alchim31.maven</groupId>
<artifactId>scala-maven-plugin</artifactId>
<version>4.4.1</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>io.swagger</groupId>
<artifactId>swagger-codegen-maven-plugin</artifactId>
<version>2.4.21</version>
</plugin>
<!-- https://mvnrepository.com/artifact/io.swagger.codegen.v3/swagger-codegen-maven-plugin -->
<plugin>
<groupId>io.swagger.codegen.v3</groupId>
<artifactId>swagger-codegen-maven-plugin</artifactId>
<version>3.0.36</version>
</plugin>
<!-- https://mvnrepository.com/artifact/org.codehaus.mojo/versions-maven-plugin -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.7</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
<version>2.0.0</version>
</plugin>
<plugin>
<artifactId>exec-maven-plugin</artifactId>
<version>1.6.0</version>
<groupId>org.codehaus.mojo</groupId>
<executions>
<execution>
<id>Install git-secrets</id>
<phase>initialize</phase>
<goals>
<goal>exec</goal>
</goals>
<configuration>
<executable>bash</executable>
<commandlineArgs>${project.parent.basedir}/scripts/install-git-hooks.sh</commandlineArgs>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>flatten-maven-plugin</artifactId>
<version>1.2.2</version>
<configuration>
<outputDirectory>${project.basedir}/generated/src/main/resources/</outputDirectory>
<updatePomFile>false</updatePomFile>
<!-- snyk is picky about filenames -->
<flattenedPomFilename>pom.xml</flattenedPomFilename>
</configuration>
<executions>
<!-- enable flattening -->
<execution>
<id>flatten</id>
<phase>validate</phase>
<goals>
<goal>flatten</goal>
</goals>
</execution>
<!-- ensure proper cleanup -->
<execution>
<id>flatten.clean</id>
<phase>clean</phase>
<goals>
<goal>clean</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>io.swagger</groupId>
<artifactId>swagger-codegen-maven-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>generate</goal>
</goals>
<configuration>
<inputSpec>${project.basedir}/src/main/resources/zenodo-1.0.0-swagger-2.0.yaml</inputSpec>
<language>java</language>
<configOptions>
<sourceFolder>src/gen/java/main</sourceFolder>
<dateLibrary>legacy</dateLibrary>
<java8>true</java8>
<invokerPackage>io.swagger.zenodo.client</invokerPackage>
<modelPackage>io.swagger.zenodo.client.model</modelPackage>
<apiPackage>io.swagger.zenodo.client.api</apiPackage>
<hideGenerationTimestamp>true</hideGenerationTimestamp>
<useRuntimeException>true</useRuntimeException>
</configOptions>
<generateModelTests>false</generateModelTests>
<generateApiTests>false</generateApiTests>
<generateModelDocumentation>false</generateModelDocumentation>
<generateApiDocumentation>false</generateApiDocumentation>
<withXml>true</withXml>
<library>jersey2</library>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.google.code.maven-replacer-plugin</groupId>
<artifactId>replacer</artifactId>
<version>1.5.3</version>
<executions>
<execution>
<id>replace1</id>
<phase>generate-sources</phase>
<goals>
<goal>replace</goal>
</goals>
</execution>
<!-- not sure why swagger-codegen-maven-plugin runs in two phases -->
<execution>
<id>replace2</id>
<phase>compile</phase>
<goals>
<goal>replace</goal>
</goals>
</execution>
</executions>
<configuration>
<includes>
<include>${pom.basedir}/target/generated-sources/swagger/src/gen/java/**/*.java</include>
<include>${pom.basedir}/target/generated-sources/swagger/src/main/java/**/*.java</include>
</includes>
<regex>false</regex>
<replacements>
<!-- for these jakarta replacements, we can do better after https://github.com/swagger-api/swagger-codegen/issues/11797 -->
<replacement>
<token>javax.annotation</token>
<value>jakarta.annotation</value>
</replacement>
<replacement>
<token>@javax.annotation</token>
<value>@jakarta.annotation</value>
</replacement>
<replacement>
<token>javax.validation</token>
<value>jakarta.validation</value>
</replacement>
<replacement>
<token>javax.ws</token>
<value>jakarta.ws</value>
</replacement>
<replacement>
<token>javax.servlet</token>
<value>jakarta.servlet</value>
</replacement>
<replacement>
<token>javax.xml.bind</token>
<value>jakarta.xml.bind</value>
</replacement>
<replacement>
<token>javax.xml.bind</token>
<value>jakarta.xml.bind</value>
</replacement>
</replacements>
</configuration>
</plugin>
<!-- auto-generated java classes should not fail the build on style -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<configuration>
<skip>true</skip>
<enableFilesSummary>true</enableFilesSummary>
<enableRulesSummary>true</enableRulesSummary>
<failOnViolation>false</failOnViolation>
<failsOnError>false</failsOnError>
</configuration>
<executions>
<execution>
<phase>
compile
</phase>
<goals>
<goal>check</goal>
</goals>
<configuration>
<consoleOutput>true</consoleOutput>
</configuration>
</execution>
</executions>
</plugin>
<!-- auto-generated java classes should not fail the build on bugs -->
<plugin>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs-maven-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
<configuration>
<failOnError>false</failOnError>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<systemProperties>
<property>
<name>loggerPath</name>
<value>conf/log4j.properties</value>
</property>
</systemProperties>
<argLine>-Xms512m -Xmx1500m</argLine>
<parallel>methods</parallel>
<forkMode>pertest</forkMode>
</configuration>
</plugin>
<plugin>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}/lib</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<!-- attach test jar -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
<configuration>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>test</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>${basedir}/target/generated-sources</source>
</sources>
</configuration>
</execution>
<execution>
<id>add_sources</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>src/main/java</source>
</sources>
</configuration>
</execution>
<execution>
<id>add_test_sources</id>
<phase>generate-test-sources</phase>
<goals>
<goal>add-test-source</goal>
</goals>
<configuration>
<sources>
<source>src/test/java</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>flatten-maven-plugin</artifactId>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>io.swagger</groupId>
<artifactId>swagger-annotations</artifactId>
</dependency>
<!-- HTTP client: jersey-client -->
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-client</artifactId>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-multipart</artifactId>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.media</groupId>
<artifactId>jersey-media-json-jackson</artifactId>
<exclusions>
<exclusion>
<groupId>com.fasterxml.jackson.jaxrs</groupId>
<artifactId>jackson-jaxrs-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- JSON processing: jackson -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<exclusions>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<exclusions>
<exclusion>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-jsr310</artifactId>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
<artifactId>jersey-common</artifactId>
</dependency>
<dependency>
<groupId>jakarta.ws.rs</groupId>
<artifactId>jakarta.ws.rs-api</artifactId>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
</project>