diff --git a/src/coreclr/build-runtime.cmd b/src/coreclr/build-runtime.cmd
index ec6887c78d84c..7e85e50f9de4d 100644
--- a/src/coreclr/build-runtime.cmd
+++ b/src/coreclr/build-runtime.cmd
@@ -428,6 +428,10 @@ if %__BuildNative% EQU 1 (
         goto ExitWithCode
     )
 
+    @REM Temporarily disabling PGO until updated files with new linker flag are available.
+    @REM https://github.com/dotnet/runtime/pull/89311
+    GOTO :SkipNativeBuild
+
     if %__EnforcePgo% EQU 1 (
         set PgoCheckCmd="!PYTHON!" "!__ProjectDir!\scripts\pgocheck.py" "!__BinDir!\coreclr.dll" "!__BinDir!\clrjit.dll"
         echo !PgoCheckCmd!
diff --git a/src/coreclr/pgosupport.cmake b/src/coreclr/pgosupport.cmake
index 719ac14ad990b..a0a2b2ab305dd 100644
--- a/src/coreclr/pgosupport.cmake
+++ b/src/coreclr/pgosupport.cmake
@@ -59,9 +59,11 @@ function(add_pgo TargetName)
             message("Cannot use PGO optimization built with Ninja from MSBuild. Re-run build with Ninja to apply PGO information")
         else(NOT EXISTS ${ProfilePath})
             if(CLR_CMAKE_HOST_WIN32)
-                set_property(TARGET ${TargetName} APPEND_STRING PROPERTY LINK_FLAGS_RELEASE        " /LTCG /USEPROFILE:PGD=\"${ProfilePath}\"")
-                set_property(TARGET ${TargetName} APPEND_STRING PROPERTY LINK_FLAGS_RELWITHDEBINFO " /LTCG /USEPROFILE:PGD=\"${ProfilePath}\"")
-                add_compile_definitions(WITH_NATIVE_PGO)
+                # Temporarily disabling PGO until updated files with new linker flag are available.
+                # https://github.com/dotnet/runtime/pull/89311
+                # set_property(TARGET ${TargetName} APPEND_STRING PROPERTY LINK_FLAGS_RELEASE        " /LTCG /USEPROFILE:PGD=\"${ProfilePath}\"")
+                # set_property(TARGET ${TargetName} APPEND_STRING PROPERTY LINK_FLAGS_RELWITHDEBINFO " /LTCG /USEPROFILE:PGD=\"${ProfilePath}\"")
+                # add_compile_definitions(WITH_NATIVE_PGO)
             else(CLR_CMAKE_HOST_WIN32)
                 if(UPPERCASE_CMAKE_BUILD_TYPE STREQUAL RELEASE OR UPPERCASE_CMAKE_BUILD_TYPE STREQUAL RELWITHDEBINFO)
                     if((CMAKE_CXX_COMPILER_ID MATCHES "Clang") AND (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 16))