job

#!/bin/csh

# Job script for Pleiades computer at NASA Ames.
#
# This file must be customized and run from the run directory! For example
#
#   cd run
#   qsub job.p4fe
#
# To avoid having too many output files run
#
#    PostProc.pl -g -r=360 >& PostProc.log &
#
# on the head node (post-processes every 10 minutes).
#

#PBS -S /bin/csh
#PBS -N MV15

# ncpus should be a multiple of 4, mpiprocs=ncpus
# set the number of CPU-s by changing select: nProc = select*mpiprocs
##PBS -l select=6:ncpus=24:model=has
#PBS -l select=1:ncpus=1:model=san
#PBS -l walltime=2:00:00
#PBS -W group_list=s0905


# cd into the run directory
cd $PBS_O_WORKDIR

#### These settings were found useful for large runs 

setenv MPI_MSGS_PER_HOST 100000
setenv MPI_MSGS_PER_PROC 100000
setenv MPI_MSGS_MAX      100000

mpiexec GITM.exe > runlog_`date +%y%m%d%H%M`

exit

# To use automated resubmission remove the 'exit' command above
# Use the #CPUTIMEMAX and #CHECKSTOP commands in PARAM.in
# so the code stops before the wall clock time is exceeded.

# Do not continue unless the job finished successfully
if(! -f GITM.DONE) exit

# Link latest restart files
./Restart.pl

# Provide a PARAM.in.restart file if you wish and uncomment these lines:
# if(! -f PARAM.in.start) cp PARAM.in PARAM.in.start
# if(-f PARAM.in.restart) cp PARAM.in.restart PARAM.in

# Check final time/iteration and resubmit if not done (modify as needed!)
if(! -d RESTART_t008.00h) qsub job.cfe2