Skip to content

Issues: dpryan79/MethylDackel

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

41 Open 72 Closed
41 Open 72 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Confused by --nOT and --nOB and the examples provided in the issues section
#163 opened Oct 29, 2024 by Flope
2
Does MethylDackel support BSBolt alignment format?
#162 opened Sep 25, 2024 by cemselb
1
[help] Can I use MethylDackel for diploid reference genome please?
#161 opened Sep 17, 2024 by lizhe-gis
1
Can MethylDackel extract per-base methylation metrics for TAPS?
#159 opened Jun 4, 2024 by SEvisual
Alignment trimming for Soft Clip reads?
#158 opened May 12, 2024 by iiiir
Different CpG calls when using different regions of inclusion for Methyldackel extract
#157 opened Apr 3, 2024 by MoniDR
Question about minimum coverage
#154 opened Jan 8, 2024 by desmodus1984
Issue running MethylDackel extract in parallel mode using minConversionEfficiency
#152 opened Dec 1, 2023 by blue-moon22
How to index genome file for MethylDackel?
#150 opened Aug 28, 2023 by harshraj1919
1
Mixed up reads within bam file
#149 opened Aug 11, 2023 by jsikora93
Could not repeat a CpG extraction with the same reference file and its index
#148 opened Jul 8, 2023 by sttongjai
2
Positions in cytosine_report did not match the regions in providing bed file
#146 opened Jun 29, 2023 by huichanghuang
Does indel effect the methylation calling or C context determination
#145 opened Jun 14, 2023 by huichanghuang
1
mbias
#142 opened May 16, 2023 by jsikora93
1
Installation failure: "bigWig.h: No such file or directory"
#139 opened Oct 25, 2022 by phongphak
1
CURL_OPENSSL conflict with samtools
#138 opened Oct 18, 2022 by shraddhapai
3
per-fragment methylation
#136 opened Jul 8, 2022 by BeyondTheProof
2
Genome browsing from MethylDackel bedGraphCpG file
#135 opened May 12, 2022 by emiliomastriani
Stand output
#133 opened Apr 4, 2022 by simonbrd
1
Methylation profile for large genome organisms
#131 opened Mar 8, 2022 by awieeeee
5
perRead output - print Bismark methylation call string?
#129 opened Nov 23, 2021 by embertucci
3
why cytosine_report output blank file?
#128 opened Nov 4, 2021 by realzhang
maxVariantFrac
#123 opened Sep 23, 2021 by Dingersrun
3
cytosine_report differences and question
#116 opened Jun 2, 2021 by nchernia
3
--OT and --OB suggestions by mbias produce "Invalid bounds string"
#112 opened Feb 18, 2021 by DaGaMs
7
ProTip! Exclude everything labeled bug with -label:bug.